Examples with Bundle org.hl7.fhir.r4b.model.Bundle used on opensource projects

Example 76 with Bundle

use of org.hl7.fhir.r4b.model.Bundle in project kindling by HL7.

the class DSTU3ValidationConvertor method convert.

public void convert(String bundleSource, String bundleTarget) throws Exception {
    System.out.println("Convert " + bundleSource);
    try {
        source = (Bundle) new XmlParser().parse(new FileInputStream(bundleSource));
        org.hl7.fhir.dstu3.model.Bundle target = Bundle30_50.convertBundle(source);
        new org.hl7.fhir.dstu3.formats.XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(bundleTarget), target);
    } catch (Exception e) {
        throw new Exception(e);
    }
}

Example 77 with Bundle

use of org.hl7.fhir.r4b.model.Bundle in project kindling by HL7.

the class SourceParser method loadCommonSearchParameters.

private void loadCommonSearchParameters() throws FHIRFormatError, FileNotFoundException, IOException {
    Bundle bnd = (Bundle) new XmlParser().parse(new CSFileInputStream(Utilities.path(srcDir, "searchparameter", "common-search-parameters.xml")));
    for (BundleEntryComponent be : bnd.getEntry()) {
        SearchParameter sp = (SearchParameter) be.getResource();
        CommonSearchParameter csp = new CommonSearchParameter();
        csp.setId(sp.getId());
        csp.setCode(sp.getCode());
        for (CodeType ct : sp.getBase()) {
            csp.getResources().add(ct.asStringValue());
            definitions.getCommonSearchParameters().put(ct.asStringValue() + "::" + sp.getCode(), csp);
        }
    }
}

Example 78 with Bundle

use of org.hl7.fhir.r4b.model.Bundle in project kindling by HL7.

the class SpreadSheetCreator method addSearchParams.

private void addSearchParams(XSSFWorkbook excel) throws FHIRFormatError, FileNotFoundException, IOException {
    Bundle bnd = (Bundle) parseXml(fnSP());
    XSSFSheet sheet = excel.createSheet(SN_SEARCH);
    addSearchColumns(sheet);
    int rowCount = 0;
    for (BundleEntryComponent be : bnd.getEntry()) {
        rowCount++;
        addSearchParam(sheet, (SearchParameter) be.getResource(), rowCount);
    }
}

Example 79 with Bundle

use of org.hl7.fhir.r4b.model.Bundle in project kindling by HL7.

the class Publisher method addToResourceFeed.

private void addToResourceFeed(CapabilityStatement cs, Bundle dest) throws Exception {
    if (cs.getId() == null)
        throw new Exception("Resource has no id");
    if (ResourceUtilities.getById(dest, ResourceType.ValueSet, cs.getId()) != null)
        throw new Exception("Attempt to add duplicate Conformance " + cs.getId());
    if (!cs.hasText() || !cs.getText().hasDiv()) {
        RendererFactory.factory(cs, page.getRc().copy()).render(cs);
    }
    if (!cs.hasText() || cs.getText().getDiv() == null)
        System.out.println("WARNING: Example CapabilityStatement " + cs.getId() + " does not have any narrative");
    // Changed this from an exception to a warning because generateConformanceStatement doesn't produce narrative if
    // "register" is 'false'
    ResourceUtilities.meta(cs).setLastUpdated(page.getGenDate().getTime());
    if (!cs.getUrl().equals("http://hl7.org/fhir/" + cs.getResourceType().toString() + "/" + cs.getId()))
        throw new Exception("URL mismatch on CapabilityStatement");
    dest.getEntry().add(new BundleEntryComponent().setResource(cs).setFullUrl("http://hl7.org/fhir/" + cs.fhirType() + "/" + cs.getId()));
}

Example 80 with Bundle

use of org.hl7.fhir.r4b.model.Bundle in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7EncounterFHIRConversionTest method test_encounter_PV1_serviceProvider.

// Test for serviceProvider reference in messages with both PV1 and PV2 segments
// Part 2: Field PV2.23 is provided but no PV2.23.8; serviceProvider id should use backup field PV1.3.4.1
@ParameterizedTest
@ValueSource(strings = { "ADT^A01", /* "ADT^A02", "ADT^A03", "ADT^A04", */
"ADT^A08", // MDM messages are not tested here because they do not have PV2 segments
"OMP^O09", "ORU^R01", "RDE^O11", "RDE^O25", "VXU^V04" })
void test_encounter_PV1_serviceProvider(String message) {
    String hl7message = "MSH|^~\\&|TestSystem||TestTransformationAgent||20150502090000||" + message + "|controlID|P|2.6\r" + "EVN||20210330144208||ADT_EVENT|007|20210309140700\r" + "PID|1||0a8a1752-e336-43e1-bf7f-0c8f6f437ca3^^^MRN||Patient^Load^Generator||19690720|M|Patient^Alias^Generator|AA|9999^^CITY^STATE^ZIP^CAN|COUNTY|(866)845-0900||ENGLISH^ENGLISH|SIN|NONE|Account_0a8a1752-e336-43e1-bf7f-0c8f6f437ca3|123-456-7890|||N|BIRTH PLACE|N||||||N\r" + "PV1||I|^^^Toronto^^5642 Hilly Av||||2905^Doctor^Attending^M^IV^^M.D|5755^Doctor^Referring^^Sr|770542^Doctor^Consulting^Jr||||||||59367^Doctor^Admitting||Visit_0a3be81e-144b-4885-9b4e-c5cd33c8f038|||||||||||||||||||||||||20210407191342\r" + "PV2||TEL||||X-5546||20210330144208|20210309||||||||||||n|N|South Shore Hosptial Weymouth|||||||||N||||||\r";
    String json = ftv.convert(hl7message, OPTIONS);
    assertThat(json).isNotBlank();
    LOGGER.debug("FHIR json result:\n" + json);
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> encounterResource = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    assertThat(encounterResource).hasSize(1);
    Encounter encounter = ResourceUtils.getResourceEncounter(encounterResource.get(0), context);
    Reference serviceProvider = encounter.getServiceProvider();
    assertThat(serviceProvider).isNotNull();
    String providerString = serviceProvider.getReference();
    assertThat(providerString).isEqualTo("Organization/toronto");
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    assertThat(organizations).hasSize(1);
    Organization orgResource = ResourceUtils.getResourceOrganization(organizations.get(0), context);
    assertThat(orgResource.getId()).isEqualTo(providerString);
    assertThat(orgResource.getName()).isEqualTo("South Shore Hosptial Weymouth");
    assertThat(orgResource.getIdentifier()).hasSize(1);
    // PV1.3.4.1
    assertThat(orgResource.getIdentifierFirstRep().getValue()).hasToString("Toronto");
    // Because ID is name based
    assertThat(orgResource.getIdentifierFirstRep().getSystem()).hasToString("urn:id:extID");
}