use of org.hl7.fhir.r4b.model.ConceptMap.ConceptMapGroupComponent in project bunsen by cerner.
the class ConceptMaps method addToConceptMap.
@Override
protected void addToConceptMap(ConceptMap map, Dataset<Mapping> mappings) {
// Sort the items so they are grouped together optimally, and so
// we consistently produce the same ordering, therefore making
// inspection and comparison of the concept maps easier.
List<Mapping> sortedMappings = mappings.sort("sourceSystem", "targetSystem", "sourceValue", "targetValue").collectAsList();
ConceptMapGroupComponent currentGroup = null;
SourceElementComponent element = null;
// Workaround for the decoder producing an immutable array by
// replacing it with a mutable one.
map.setGroup(new ArrayList<>(map.getGroup()));
for (Mapping mapping : sortedMappings) {
// Add a new group if we don't match the previous one.
if (currentGroup == null || !mapping.getSourceSystem().equals(currentGroup.getSource()) || !mapping.getTargetSystem().equals(currentGroup.getTarget())) {
currentGroup = null;
// Find a matching group.
for (ConceptMapGroupComponent candidate : map.getGroup()) {
if (mapping.getSourceSystem().equals(candidate.getSource()) && mapping.getTargetSystem().equals(candidate.getTarget())) {
currentGroup = candidate;
// Workaround for the decoder producing an immutable array by
// replacing it with a mutable one.
currentGroup.setElement(new ArrayList<>(currentGroup.getElement()));
break;
}
}
// No matching group found, so add it.
if (currentGroup == null) {
currentGroup = map.addGroup();
currentGroup.setSource(mapping.getSourceSystem());
currentGroup.setTarget(mapping.getTargetSystem());
// Ensure a new element is created for the newly created group.
element = null;
}
}
// so add one if it does not match the previous.
if (element == null || !mapping.getSourceValue().equals(element.getCode())) {
element = currentGroup.addElement();
element.setCode(mapping.getSourceValue());
}
element.addTarget().setCode(mapping.getTargetValue());
}
}
use of org.hl7.fhir.r4b.model.ConceptMap.ConceptMapGroupComponent in project bunsen by cerner.
the class BroadcastableMappingsTest method setUp.
/**
* Sets up Spark and concept maps for testing.
*/
@BeforeClass
public static void setUp() {
spark = SparkSession.builder().master("local[2]").appName("BroadcastableMappingsTest").getOrCreate();
ConceptMap conceptMap = new ConceptMap();
conceptMap.setUrl("uri:test:concept:map").setVersion("0").setSource(new UriType("uri:test:source:valueset")).setTarget(new UriType("uri:test:target:valueset"));
ConceptMapGroupComponent group = conceptMap.addGroup().setSource("uri:test:source:system").setTarget("uri:test:target:system");
group.addElement().setCode("abc").addTarget().setCode("123");
group.addElement().setCode("def").addTarget().setCode("456");
ConceptMap delegatingMap = new ConceptMap();
delegatingMap.setUrl("uri:test:concept:delegating").setVersion("0").setSource(new UriType("uri:test:source:valueset")).setTarget(new UriType("uri:test:target:valueset"));
delegatingMap.addGroup().setSource("uri:test:source:system").setTarget("uri:test:target:system").setUnmapped(new ConceptMapGroupUnmappedComponent().setMode(ConceptMapGroupUnmappedMode.OTHERMAP).setUrl("uri:test:concept:map"));
broadcast = ConceptMaps.getEmpty(spark).withConceptMaps(conceptMap, delegatingMap).broadcast(ImmutableMap.of("uri:test:concept:map", "0", "uri:test:concept:delegating", "0"));
ConceptMap conceptMapLatest = new ConceptMap();
conceptMapLatest.setUrl("uri:test:concept:map").setVersion("1").setSource(new UriType("uri:test:source:valueset")).setTarget(new UriType("uri:test:target:valueset"));
ConceptMapGroupComponent groupLatest = conceptMapLatest.addGroup().setSource("uri:test:source:system").setTarget("uri:test:target:system");
groupLatest.addElement().setCode("abc").addTarget().setCode("123");
groupLatest.addElement().setCode("def").addTarget().setCode("xyz");
ConceptMaps maps = ConceptMaps.getEmpty(spark).withConceptMaps(conceptMap, conceptMapLatest);
broadcastLatest = maps.broadcast(maps.getLatestVersions(true));
}
use of org.hl7.fhir.r4b.model.ConceptMap.ConceptMapGroupComponent in project bunsen by cerner.
the class ConceptMaps method expandMappingsIterator.
private static Iterator<Mapping> expandMappingsIterator(ConceptMap map) {
List<Mapping> mappings = new ArrayList<>();
for (ConceptMapGroupComponent group : map.getGroup()) {
for (SourceElementComponent element : group.getElement()) {
for (TargetElementComponent target : element.getTarget()) {
Mapping mapping = new Mapping();
mapping.setConceptMapUri(map.getUrl());
mapping.setConceptMapVersion(map.getVersion());
try {
String sourceValue = map.getSource() instanceof UriType ? map.getSourceUriType().getValue() : map.getSourceUriType().getValue();
mapping.setSourceValueSet(sourceValue);
String targetValue = map.getTarget() instanceof UriType ? map.getTargetUriType().getValue() : map.getTargetUriType().getValue();
mapping.setTargetValueSet(targetValue);
} catch (FHIRException fhirException) {
// an exception.
throw new RuntimeException(fhirException);
}
mapping.setSourceSystem(group.getSource());
mapping.setSourceValue(element.getCode());
mapping.setTargetSystem(group.getTarget());
mapping.setTargetValue(target.getCode());
if (target.getEquivalence() != null) {
mapping.setEquivalence(target.getEquivalence().toCode());
}
mappings.add(mapping);
}
}
}
return mappings.iterator();
}
use of org.hl7.fhir.r4b.model.ConceptMap.ConceptMapGroupComponent in project bunsen by cerner.
the class ConceptMaps method expandMappingsIterator.
private static Iterator<Mapping> expandMappingsIterator(ConceptMap map) {
List<Mapping> mappings = new ArrayList<>();
for (ConceptMapGroupComponent group : map.getGroup()) {
for (SourceElementComponent element : group.getElement()) {
for (TargetElementComponent target : element.getTarget()) {
Mapping mapping = new Mapping();
mapping.setConceptMapUri(map.getUrl());
mapping.setConceptMapVersion(map.getVersion());
try {
String sourceValue = map.getSource() instanceof UriType ? map.getSourceUriType().getValue() : map.getSourceReference().getReference();
mapping.setSourceValueSet(sourceValue);
String targetValue = map.getTarget() instanceof UriType ? map.getTargetUriType().getValue() : map.getTargetReference().getReference();
mapping.setTargetValueSet(targetValue);
} catch (FHIRException fhirException) {
// an exception.
throw new RuntimeException(fhirException);
}
mapping.setSourceSystem(group.getSource());
mapping.setSourceValue(element.getCode());
mapping.setTargetSystem(group.getTarget());
mapping.setTargetValue(target.getCode());
if (target.getEquivalence() != null) {
mapping.setEquivalence(target.getEquivalence().toCode());
}
mappings.add(mapping);
}
}
}
return mappings.iterator();
}
use of org.hl7.fhir.r4b.model.ConceptMap.ConceptMapGroupComponent in project bunsen by cerner.
the class ConceptMaps method addToConceptMap.
/**
* Adds the given mappings to the concept map.
*
* @param map the concept map
* @param mappings the mappings to add
*/
private static void addToConceptMap(ConceptMap map, Dataset<Mapping> mappings) {
// Sort the items so they are grouped together optimally, and so
// we consistently produce the same ordering, therefore making
// inspection and comparison of the concept maps easier.
List<Mapping> sortedMappings = mappings.sort("sourceSystem", "targetSystem", "sourceValue", "targetValue").collectAsList();
ConceptMapGroupComponent currentGroup = null;
SourceElementComponent element = null;
// Workaround for the decoder producing an immutable array by
// replacing it with a mutable one.
map.setGroup(new ArrayList<>(map.getGroup()));
for (Mapping mapping : sortedMappings) {
// Add a new group if we don't match the previous one.
if (currentGroup == null || !mapping.getSourceSystem().equals(currentGroup.getSource()) || !mapping.getTargetSystem().equals(currentGroup.getTarget())) {
currentGroup = null;
// Find a matching group.
for (ConceptMapGroupComponent candidate : map.getGroup()) {
if (mapping.getSourceSystem().equals(candidate.getSource()) && mapping.getTargetSystem().equals(candidate.getTarget())) {
currentGroup = candidate;
// Workaround for the decoder producing an immutable array by
// replacing it with a mutable one.
currentGroup.setElement(new ArrayList<>(currentGroup.getElement()));
break;
}
}
// No matching group found, so add it.
if (currentGroup == null) {
currentGroup = map.addGroup();
currentGroup.setSource(mapping.getSourceSystem());
currentGroup.setTarget(mapping.getTargetSystem());
// Ensure a new element is created for the newly created group.
element = null;
}
}
// so add one if it does not match the previous.
if (element == null || !mapping.getSourceValue().equals(element.getCode())) {
element = currentGroup.addElement();
element.setCode(mapping.getSourceValue());
}
element.addTarget().setCode(mapping.getTargetValue());
}
}
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