use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method genInclude.
private boolean genInclude(XhtmlNode ul, ConceptSetComponent inc, String type) {
boolean hasExtensions = false;
XhtmlNode li;
li = ul.addTag("li");
CodeSystem e = context.fetchCodeSystem(inc.getSystem());
if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
li.addText(type + " all codes defined in ");
addCsRef(inc, li, e);
} else {
if (inc.getConcept().size() > 0) {
li.addText(type + " these codes as defined in ");
addCsRef(inc, li, e);
XhtmlNode t = li.addTag("table");
boolean hasComments = false;
boolean hasDefinition = false;
for (ConceptReferenceComponent c : inc.getConcept()) {
hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_COMMENT);
hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
}
if (hasComments || hasDefinition)
hasExtensions = true;
addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
for (ConceptReferenceComponent c : inc.getConcept()) {
XhtmlNode tr = t.addTag("tr");
tr.addTag("td").addText(c.getCode());
ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc.getSystem());
XhtmlNode td = tr.addTag("td");
if (!Utilities.noString(c.getDisplay()))
td.addText(c.getDisplay());
else if (cc != null && !Utilities.noString(cc.getDisplay()))
td.addText(cc.getDisplay());
td = tr.addTag("td");
if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
else if (cc != null && !Utilities.noString(cc.getDefinition()))
smartAddText(td, cc.getDefinition());
if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_COMMENT)) {
smartAddText(tr.addTag("td"), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_COMMENT));
}
}
}
boolean first = true;
for (ConceptSetFilterComponent f : inc.getFilter()) {
if (first) {
li.addText(type + " codes from ");
first = false;
} else
li.addText(" and ");
addCsRef(inc, li, e);
li.addText(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
if (e != null && codeExistsInValueSet(e, f.getValue())) {
XhtmlNode a = li.addTag("a");
a.addText(f.getValue());
a.setAttribute("href", prefix + getCsRef(e) + "#" + Utilities.nmtokenize(f.getValue()));
} else
li.addText(f.getValue());
String disp = ToolingExtensions.getDisplayHint(f);
if (disp != null)
li.addText(" (" + disp + ")");
}
}
return hasExtensions;
}
use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method genInclude.
private boolean genInclude(ResourceContext rcontext, XhtmlNode ul, ConceptSetComponent inc, String type, List<String> langs) throws FHIRException {
boolean hasExtensions = false;
XhtmlNode li;
li = ul.li();
CodeSystem e = context.fetchCodeSystem(inc.getSystem());
if (inc.hasSystem()) {
if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
li.addText(type + " all codes defined in ");
addCsRef(inc, li, e);
} else {
if (inc.getConcept().size() > 0) {
li.addText(type + " these codes as defined in ");
addCsRef(inc, li, e);
XhtmlNode t = li.table("none");
boolean hasComments = false;
boolean hasDefinition = false;
for (ConceptReferenceComponent c : inc.getConcept()) {
hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT);
hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
}
if (hasComments || hasDefinition)
hasExtensions = true;
addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
for (ConceptReferenceComponent c : inc.getConcept()) {
XhtmlNode tr = t.tr();
XhtmlNode td = tr.td();
ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc);
addCodeToTable(false, inc.getSystem(), c.getCode(), c.hasDisplay() ? c.getDisplay() : cc != null ? cc.getDisplay() : "", td);
td = tr.td();
if (!Utilities.noString(c.getDisplay()))
td.addText(c.getDisplay());
else if (cc != null && !Utilities.noString(cc.getDisplay()))
td.addText(cc.getDisplay());
td = tr.td();
if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
else if (cc != null && !Utilities.noString(cc.getDefinition()))
smartAddText(td, cc.getDefinition());
if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT)) {
smartAddText(tr.td(), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_VS_COMMENT));
}
for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
if (cd.hasLanguage() && !langs.contains(cd.getLanguage()))
langs.add(cd.getLanguage());
}
}
}
boolean first = true;
for (ConceptSetFilterComponent f : inc.getFilter()) {
if (first) {
li.addText(type + " codes from ");
first = false;
} else
li.tx(" and ");
addCsRef(inc, li, e);
li.tx(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
if (e != null && codeExistsInValueSet(e, f.getValue())) {
String href = prefix + getCsRef(e);
if (href.contains("#"))
href = href + "-" + Utilities.nmtokenize(f.getValue());
else
href = href + "#" + e.getId() + "-" + Utilities.nmtokenize(f.getValue());
li.ah(href).addText(f.getValue());
} else if ("concept".equals(f.getProperty()) && inc.hasSystem()) {
li.addText(f.getValue());
ValidationResult vr = context.validateCode(inc.getSystem(), f.getValue(), null);
if (vr.isOk()) {
li.tx(" (" + vr.getDisplay() + ")");
}
} else
li.addText(f.getValue());
String disp = ToolingExtensions.getDisplayHint(f);
if (disp != null)
li.tx(" (" + disp + ")");
}
}
if (inc.hasValueSet()) {
li.tx(", where the codes are contained in ");
boolean first = true;
for (UriType vs : inc.getValueSet()) {
if (first)
first = false;
else
li.tx(", ");
AddVsRef(rcontext, vs.asStringValue(), li);
}
}
} else {
li = ul.li();
li.tx("Import all the codes that are contained in ");
boolean first = true;
for (UriType vs : inc.getValueSet()) {
if (first)
first = false;
else
li.tx(", ");
AddVsRef(rcontext, vs.asStringValue(), li);
}
}
return hasExtensions;
}
use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetExpanderSimple method excludeCodes.
private void excludeCodes(ConceptSetComponent exc, List<ValueSetExpansionParameterComponent> params, String ctxt) throws FHIRException {
exc.checkNoModifiers("Compose.exclude", "expanding");
if (exc.hasSystem() && exc.getConcept().size() == 0 && exc.getFilter().size() == 0) {
excludeSystems.add(exc.getSystem());
}
if (exc.hasValueSet())
throw new Error("Processing Value set references in exclude is not yet done in " + ctxt);
// importValueSet(imp.getValue(), params, expParams);
CodeSystem cs = context.fetchCodeSystem(exc.getSystem());
if ((cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE) && context.supportsSystem(exc.getSystem())) {
ValueSetExpansionOutcome vse = context.expandVS(exc, false);
ValueSet valueset = vse.getValueset();
if (valueset == null)
throw new TerminologyServiceException("Error Expanding ValueSet: " + vse.getError());
excludeCodes(valueset.getExpansion(), params);
return;
}
for (ConceptReferenceComponent c : exc.getConcept()) {
excludeCode(exc.getSystem(), c.getCode());
}
if (exc.getFilter().size() > 0)
throw new NotImplementedException("not done yet");
}
use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetCheckerSimple method inComponent.
private boolean inComponent(ConceptSetComponent vsi, String system, String code, boolean only) throws FHIRException {
for (UriType uri : vsi.getValueSet()) {
if (inImport(uri.getValue(), system, code))
return true;
}
if (!vsi.hasSystem())
return false;
if (only && system == null) {
// whether we know the system or not, we'll accept the stated codes at face value
for (ConceptReferenceComponent cc : vsi.getConcept()) if (cc.getCode().equals(code))
return true;
}
if (!system.equals(vsi.getSystem()))
return false;
if (vsi.hasFilter()) {
boolean ok = true;
for (ConceptSetFilterComponent f : vsi.getFilter()) if (!codeInFilter(system, f, code)) {
ok = false;
break;
}
if (ok)
return true;
}
CodeSystem def = context.fetchCodeSystem(system);
if (def.getContent() != CodeSystemContentMode.COMPLETE)
throw new FHIRException("Unable to resolve system " + vsi.getSystem() + " - system is not complete");
List<ConceptDefinitionComponent> list = def.getConcept();
boolean ok = validateCodeInConceptList(code, def, list);
if (ok && vsi.hasConcept()) {
for (ConceptReferenceComponent cc : vsi.getConcept()) if (cc.getCode().equals(code))
return true;
return false;
} else
return ok;
}
use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetComparer method addComposeRow.
private void addComposeRow(HierarchicalTableGenerator gen, List<Row> rows, StructuralMatch<Element> t, String name) {
Row r = gen.new Row();
rows.add(r);
r.getCells().add(gen.new Cell(null, null, name, null, null));
if (t.hasLeft() && t.hasRight()) {
ConceptSetComponent csL = (ConceptSetComponent) t.getLeft();
ConceptSetComponent csR = (ConceptSetComponent) t.getRight();
if (csL.hasSystem() && csL.getSystem().equals(csR.getSystem())) {
r.getCells().add(gen.new Cell(null, null, csL.getSystem(), null, null).span(2).center());
} else {
r.getCells().add(gen.new Cell(null, null, csL.getSystem(), null, null).setStyle("background-color: " + COLOR_DIFFERENT));
r.getCells().add(gen.new Cell(null, null, csR.getSystem(), null, null).setStyle("background-color: " + COLOR_DIFFERENT));
}
if (csL.hasVersion() && csR.hasVersion()) {
if (csL.getVersion().equals(csR.getVersion())) {
r.getCells().add(gen.new Cell(null, null, csL.getVersion(), null, null).span(2).center());
} else {
r.getCells().add(gen.new Cell(null, null, csL.getVersion(), null, null).setStyle("background-color: " + COLOR_DIFFERENT));
r.getCells().add(gen.new Cell(null, null, csR.getVersion(), null, null).setStyle("background-color: " + COLOR_DIFFERENT));
}
} else if (csL.hasVersion()) {
r.getCells().add(gen.new Cell(null, null, csL.getVersion(), null, null));
r.getCells().add(missingCell(gen, COLOR_NO_CELL_RIGHT));
} else if (csR.hasVersion()) {
r.getCells().add(missingCell(gen, COLOR_NO_CELL_LEFT));
r.getCells().add(gen.new Cell(null, null, csR.getVersion(), null, null));
} else {
r.getCells().add(missingCell(gen).span(2).center());
}
} else if (t.hasLeft()) {
r.setColor(COLOR_NO_ROW_RIGHT);
ConceptSetComponent cs = (ConceptSetComponent) t.getLeft();
r.getCells().add(gen.new Cell(null, null, cs.getSystem(), null, null));
r.getCells().add(missingCell(gen));
r.getCells().add(gen.new Cell(null, null, cs.hasVersion() ? "Version: " + cs.getVersion() : "", null, null));
r.getCells().add(missingCell(gen));
} else {
r.setColor(COLOR_NO_ROW_LEFT);
ConceptSetComponent cs = (ConceptSetComponent) t.getRight();
r.getCells().add(missingCell(gen));
r.getCells().add(gen.new Cell(null, null, cs.getSystem(), null, null));
r.getCells().add(missingCell(gen));
r.getCells().add(gen.new Cell(null, null, cs.hasVersion() ? "Version: " + cs.getVersion() : "", null, null));
}
r.getCells().add(cellForMessages(gen, t.getMessages()));
for (StructuralMatch<Element> c : t.getChildren()) {
if (c.either() instanceof ConceptReferenceComponent) {
addSetConceptRow(gen, r.getSubRows(), c);
} else {
addSetFilterRow(gen, r.getSubRows(), c);
}
}
}
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