Examples with Row org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row used on opensource projects

Example 1 with Row

use of org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row in project bunsen by cerner.

the class FhirEncodersTest method coding.

@Test
public void coding() {
    Coding expectedCoding = condition.getSeverity().getCodingFirstRep();
    Coding actualCoding = decodedCondition.getSeverity().getCodingFirstRep();
    // Codings are a nested array, so we explode them into a table of the coding
    // fields so we can easily select and compare individual fields.
    Dataset<Row> severityCodings = conditionsDataset.select(functions.explode(conditionsDataset.col("severity.coding")).alias("coding")).select(// Pull all fields in the coding to the top level.
    "coding.*").cache();
    Assert.assertEquals(expectedCoding.getCode(), severityCodings.select("code").head().get(0));
    Assert.assertEquals(expectedCoding.getCode(), actualCoding.getCode());
    Assert.assertEquals(expectedCoding.getSystem(), severityCodings.select("system").head().get(0));
    Assert.assertEquals(expectedCoding.getSystem(), actualCoding.getSystem());
    Assert.assertEquals(expectedCoding.getUserSelected(), severityCodings.select("userSelected").head().get(0));
    Assert.assertEquals(expectedCoding.getUserSelected(), actualCoding.getUserSelected());
    Assert.assertEquals(expectedCoding.getDisplay(), severityCodings.select("display").head().get(0));
    Assert.assertEquals(expectedCoding.getDisplay(), actualCoding.getDisplay());
}

Example 2 with Row

use of org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row in project kindling by HL7.

the class PageProcessor method genStatusCodes.

private String genStatusCodes() throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("<table border=\"1\">\r\n");
    int colcount = 0;
    for (ArrayList<String> row : definitions.getStatusCodes().values()) {
        int rc = 0;
        for (int i = 0; i < row.size(); i++) if (!Utilities.noString(row.get(i)))
            rc = i;
        if (rc > colcount)
            colcount = rc;
    }
    // b.append("<tr>");
    // b.append("<td>Path</td>");
    // for (int i = 0; i < colcount; i++)
    // b.append("<td>c").append(Integer.toString(i + 1)).append("</td>");
    // b.append("</tr>\r\n");
    List<String> names = new ArrayList<String>();
    for (String n : definitions.getStatusCodes().keySet()) names.add(n);
    Collections.sort(names);
    ArrayList<String> row = definitions.getStatusCodes().get("@code");
    b.append("<tr>");
    b.append("<td><b>code</b></td>");
    for (int i = 0; i < colcount; i++) b.append("<td><b><a href=\"codesystem-resource-status.html#resource-status-" + row.get(i) + "\">").append(row.get(i)).append("</a></b></td>");
    b.append("</tr>\r\n");
    row = definitions.getStatusCodes().get("@codes");
    b.append("<tr>");
    b.append("<td><b>stated codes</b></td>");
    for (int i = 0; i < colcount; i++) b.append("<td>").append(i < row.size() ? row.get(i) : "").append("</td>");
    b.append("</tr>\r\n");
    b.append("<tr>");
    b.append("<td>actual codes</td>");
    for (int i = 0; i < colcount; i++) {
        Set<String> codeset = new HashSet<String>();
        for (String n : names) {
            if (!n.startsWith("@")) {
                row = definitions.getStatusCodes().get(n);
                String c = row.get(i);
                if (!Utilities.noString(c)) {
                    codeset.add(c);
                }
            }
        }
        b.append("<td>").append(separated(codeset, ", ")).append("</td>");
    }
    b.append("</tr>\r\n");
    row = definitions.getStatusCodes().get("@issues");
    b.append("<tr>");
    b.append("<td><b>Issues?</b></td>");
    for (int i = 0; i < colcount; i++) {
        String s = i < row.size() ? row.get(i) : "";
        b.append("<td").append(Utilities.noString(s) ? "" : " style=\"background-color: #ffcccc\"").append(">").append(s).append("</td>");
    }
    b.append("</tr>\r\n");
    for (String n : names) {
        if (!n.startsWith("@")) {
            b.append("<tr>");
            ElementDefn ed = getElementDefn(n);
            if (ed == null || !ed.isModifier())
                b.append("<td>").append(linkToPath(n)).append("</td>");
            else
                b.append("<td><b>").append(linkToPath(n)).append("</b></td>");
            row = definitions.getStatusCodes().get(n);
            for (int i = 0; i < colcount; i++) b.append("<td>").append(i < row.size() ? row.get(i) : "").append("</td>");
            b.append("</tr>\r\n");
        }
    }
    b.append("</table>\r\n");
    CodeSystem cs = getCodeSystems().get("http://hl7.org/fhir/resource-status");
    row = definitions.getStatusCodes().get("@code");
    for (int i = 0; i < colcount; i++) {
        String code = row.get(i);
        String definition = CodeSystemUtilities.getCodeDefinition(cs, code);
        Set<String> dset = new HashSet<String>();
        for (String n : names) {
            if (!n.startsWith("@")) {
                ArrayList<String> rowN = definitions.getStatusCodes().get(n);
                String c = rowN.get(i);
                String d = getDefinition(n, c);
                if (!Utilities.noString(d))
                    dset.add(d);
            }
        }
        b.append("<hr/>\r\n");
        b.append("<h4>").append(code).append("</h4>\r\n");
        b.append("<p>").append(Utilities.escapeXml(definition)).append("</p>\r\n");
        b.append("<p>Definitions for matching codes:</p>\r\n");
        b.append("<ul>\r\n");
        for (String s : sorted(dset)) b.append("<li>").append(Utilities.escapeXml(s)).append("</li>\r\n");
        b.append("</ul>\r\n");
    }
    return b.toString();
}

Example 3 with Row

use of org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row in project kindling by HL7.

the class PageProcessor method generateToc.

private String generateToc() throws Exception {
    // return breadCrumbManager.makeToc();
    List<String> entries = new ArrayList<String>();
    entries.addAll(toc.keySet());
    Collections.sort(entries, new SectionSorter());
    Set<String> pages = new HashSet<String>();
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(folders.dstDir, false, true);
    TableModel model = gen.new TableModel("toc", true);
    model.getTitles().add(gen.new Title(null, model.getDocoRef(), "Table of Contents", "Table of Contents", null, 0));
    Deque<TocItem> stack = new ArrayDeque<TocItem>();
    for (String s : entries) {
        TocEntry t = toc.get(s);
        if (!t.isIg() && !s.startsWith("?")) {
            String nd = s;
            while (nd.endsWith(".0")) nd = nd.substring(0, nd.length() - 2);
            int d = Utilities.charCount(nd, '.');
            if (d < 4 && !pages.contains(t.getLink())) {
                String np = getNormativePackageForPage(t.getLink());
                pages.add(t.getLink());
                while (!stack.isEmpty() && stack.getFirst().depth >= d) stack.pop();
                Row row = gen.new Row();
                row.setIcon("icon_page.gif", null);
                String td = t.getText();
                if (!stack.isEmpty()) {
                    if (td.startsWith(stack.getFirst().entry.getText() + " - "))
                        td = td.substring(stack.getFirst().entry.getText().length() + 3);
                    else if (td.startsWith(stack.getFirst().entry.getText()))
                        td = td.substring(stack.getFirst().entry.getText().length());
                }
                Cell cell = gen.new Cell(null, t.getLink(), nd + " " + td, t.getText() + " ", null);
                row.getCells().add(cell);
                if (np != null) {
                    cell.addPiece(gen.new Piece(null, " ", null));
                    cell.addPiece(gen.new Piece("versions.html#std-process", "basic".equals(np) ? "(Normative)" : "(Normative / " + Utilities.capitalize(np) + ")", null).addStyle("color: #008000"));
                    if (np.equals("infrastructure"))
                        row.setIcon("icon_page_n_i.gif", null);
                    else if (np.equals("conformance"))
                        row.setIcon("icon_page_n_c.gif", null);
                    else if (np.equals("patient"))
                        row.setIcon("icon_page_n_p.gif", null);
                    else if (np.equals("observation"))
                        row.setIcon("icon_page_n_o.gif", null);
                    else
                        row.setIcon("icon_page_n.gif", null);
                } else {
                    cell.addPiece(gen.new Piece(null, " ", null));
                    cell.addPiece(gen.new Piece("versions.html#std-process", "(Trial Use)", null).addStyle("color: #b3b3b3"));
                }
                if (stack.isEmpty())
                    model.getRows().add(row);
                else
                    stack.getFirst().row.getSubRows().add(row);
                stack.push(new TocItem(t, row, d));
            }
        }
    }
    return new XhtmlComposer(XhtmlComposer.HTML).compose(gen.generate(model, "", 0, null));
}

Example 4 with Row

use of org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row in project kindling by HL7.

the class BindingsParser method parse.

public List<BindingSpecification> parse() throws Exception {
    List<BindingSpecification> results = new ArrayList<BindingSpecification>();
    // BindingSpecification n = new BindingSpecification();
    // n.setName("*unbound*");
    // n.setBinding(BindingSpecification.Binding.Unbound);
    // results.add(n);
    xls = new XLSXmlParser(file, filename);
    new XLSXmlNormaliser(filename, exceptionIfExcelNotNormalised).go();
    Sheet sheet = xls.getSheets().get("Bindings");
    for (int row = 0; row < sheet.rows.size(); row++) {
        processLine(results, sheet, row);
    }
    return results;
}

Example 5 with Row

use of org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row in project kindling by HL7.

the class OldSpreadsheetParser method parseProfileSheet.

private ConstraintStructure parseProfileSheet(Definitions definitions, Profile ap, String n, List<String> namedSheets, boolean published, String usage, List<ValidationMessage> issues, WorkGroup wg, String fmm) throws Exception {
    Sheet sheet;
    ResourceDefn resource = new ResourceDefn();
    sheet = loadSheet(n + "-Inv");
    Map<String, Invariant> invariants = null;
    if (sheet != null) {
        invariants = readInvariants(sheet, n, n + "-Inv");
    } else {
        invariants = new HashMap<String, Invariant>();
    }
    sheet = loadSheet(n);
    if (sheet == null)
        throw new Exception("The StructureDefinition referred to a tab by the name of '" + n + "', but no tab by the name could be found");
    for (int row = 0; row < sheet.rows.size(); row++) {
        ElementDefn e = processLine(resource, sheet, row, invariants, true, ap, row == 0);
        if (e != null)
            for (TypeRef t : e.getTypes()) {
                if (t.getProfile() != null && !t.getName().equals("Extension") && t.getProfile().startsWith("#")) {
                    if (!namedSheets.contains(t.getProfile().substring(1)))
                        namedSheets.add(t.getProfile().substring(1));
                }
            }
    }
    sheet = loadSheet(n + "-Extensions");
    if (sheet != null) {
        int row = 0;
        while (row < sheet.rows.size()) {
            if (sheet.getColumn(row, "Code").startsWith("!"))
                row++;
            else
                row = processExtension(resource.getRoot().getElementByName(definitions, "extensions", true, false), sheet, row, definitions, ap.metadata("extension.uri"), ap, issues, invariants, wg);
        }
    }
    sheet = loadSheet(n + "-Search");
    if (sheet != null) {
        readSearchParams(resource, sheet, true);
    }
    if (invariants != null) {
        for (Invariant inv : invariants.values()) {
            if (Utilities.noString(inv.getContext()))
                throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " has no context");
            else {
                ElementDefn ed = findContext(resource.getRoot(), inv.getContext(), "Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " Context");
                // TODO: Need to resolve context based on element name, not just path
                if (ed.getName().endsWith("[x]") && !inv.getContext().endsWith("[x]"))
                    inv.setFixedName(inv.getContext().substring(inv.getContext().lastIndexOf(".") + 1));
                ed.getInvariants().put(inv.getId(), inv);
                if (Utilities.noString(inv.getXpath())) {
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") has no XPath statement");
                } else if (inv.getXpath().contains("\""))
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") contains a \" character");
            // if (Utilities.noString(inv.getExpression()))
            // throw new Exception("Type "+resource.getRoot().getName()+" Invariant "+inv.getId()+" ("+inv.getEnglish()+") has no Expression statement (in FHIRPath format)");
            }
        }
    }
    resource.getRoot().setProfileName(n);
    if (n.toLowerCase().equals(ap.getId()))
        throw new Exception("Duplicate Profile Name: Package id " + ap.getId() + " and profile id " + n.toLowerCase() + " are the same");
    if (profileIds.containsKey(n.toLowerCase()))
        throw new Exception("Duplicate Profile Name: " + n.toLowerCase() + " in " + ap.getId() + ", already registered in " + profileIds.get(n.toLowerCase()).getOwner());
    ConstraintStructure p = new ConstraintStructure(n.toLowerCase(), resource.getRoot().getProfileName(), resource, ig != null ? ig : definitions.getUsageIG(usage, "Parsing " + name), wg, fmm, Utilities.existsInList(ap.metadata("Experimental"), "y", "Y", "true", "TRUE", "1"));
    p.setOwner(ap.getId());
    profileIds.put(n.toLowerCase(), p);
    return p;
}