Examples with ValidationResult org.hl7.fhir.r5.context.IWorkerContext.ValidationResult used on opensource projects

Example 11 with ValidationResult

use of org.hl7.fhir.r5.context.IWorkerContext.ValidationResult in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method verifyCodeExternal.

private ValidationResult verifyCodeExternal(ValueSet vs, Coding coding, boolean tryCache) throws Exception {
    ValidationResult res = vs == null ? null : handleByCache(vs, coding, tryCache);
    if (res != null) {
        return res;
    }
    Parameters pin = new Parameters();
    pin.addParameter().setName("coding").setValue(coding);
    if (vs != null) {
        pin.addParameter().setName("valueSet").setResource(vs);
    }
    res = serverValidateCode(pin, vs == null);
    if (vs != null) {
        Map<String, ValidationResult> cache = validationCache.get(vs.getUrl());
        cache.put(cacheId(coding), res);
    }
    return res;
}

Example 12 with ValidationResult

use of org.hl7.fhir.r5.context.IWorkerContext.ValidationResult in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method genInclude.

private boolean genInclude(ResourceContext rcontext, XhtmlNode ul, ConceptSetComponent inc, String type, List<String> langs) throws FHIRException {
    boolean hasExtensions = false;
    XhtmlNode li;
    li = ul.li();
    CodeSystem e = context.fetchCodeSystem(inc.getSystem());
    if (inc.hasSystem()) {
        if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
            li.addText(type + " all codes defined in ");
            addCsRef(inc, li, e);
        } else {
            if (inc.getConcept().size() > 0) {
                li.addText(type + " these codes as defined in ");
                addCsRef(inc, li, e);
                XhtmlNode t = li.table("none");
                boolean hasComments = false;
                boolean hasDefinition = false;
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT);
                    hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
                }
                if (hasComments || hasDefinition)
                    hasExtensions = true;
                addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    XhtmlNode tr = t.tr();
                    XhtmlNode td = tr.td();
                    ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc);
                    addCodeToTable(false, inc.getSystem(), c.getCode(), c.hasDisplay() ? c.getDisplay() : cc != null ? cc.getDisplay() : "", td);
                    td = tr.td();
                    if (!Utilities.noString(c.getDisplay()))
                        td.addText(c.getDisplay());
                    else if (cc != null && !Utilities.noString(cc.getDisplay()))
                        td.addText(cc.getDisplay());
                    td = tr.td();
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
                        smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
                    else if (cc != null && !Utilities.noString(cc.getDefinition()))
                        smartAddText(td, cc.getDefinition());
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT)) {
                        smartAddText(tr.td(), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_VS_COMMENT));
                    }
                    for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
                        if (cd.hasLanguage() && !langs.contains(cd.getLanguage()))
                            langs.add(cd.getLanguage());
                    }
                }
            }
            boolean first = true;
            for (ConceptSetFilterComponent f : inc.getFilter()) {
                if (first) {
                    li.addText(type + " codes from ");
                    first = false;
                } else
                    li.tx(" and ");
                addCsRef(inc, li, e);
                li.tx(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
                if (e != null && codeExistsInValueSet(e, f.getValue())) {
                    String href = prefix + getCsRef(e);
                    if (href.contains("#"))
                        href = href + "-" + Utilities.nmtokenize(f.getValue());
                    else
                        href = href + "#" + e.getId() + "-" + Utilities.nmtokenize(f.getValue());
                    li.ah(href).addText(f.getValue());
                } else if ("concept".equals(f.getProperty()) && inc.hasSystem()) {
                    li.addText(f.getValue());
                    ValidationResult vr = context.validateCode(inc.getSystem(), f.getValue(), null);
                    if (vr.isOk()) {
                        li.tx(" (" + vr.getDisplay() + ")");
                    }
                } else
                    li.addText(f.getValue());
                String disp = ToolingExtensions.getDisplayHint(f);
                if (disp != null)
                    li.tx(" (" + disp + ")");
            }
        }
        if (inc.hasValueSet()) {
            li.tx(", where the codes are contained in ");
            boolean first = true;
            for (UriType vs : inc.getValueSet()) {
                if (first)
                    first = false;
                else
                    li.tx(", ");
                AddVsRef(rcontext, vs.asStringValue(), li);
            }
        }
    } else {
        li = ul.li();
        li.tx("Import all the codes that are contained in ");
        boolean first = true;
        for (UriType vs : inc.getValueSet()) {
            if (first)
                first = false;
            else
                li.tx(", ");
            AddVsRef(rcontext, vs.asStringValue(), li);
        }
    }
    return hasExtensions;
}

Example 13 with ValidationResult

use of org.hl7.fhir.r5.context.IWorkerContext.ValidationResult in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method buildCoding.

private Coding buildCoding(String uri, String code) throws FHIRException {
    // if we can get this as a valueSet, we will
    String system = null;
    String display = null;
    ValueSet vs = Utilities.noString(uri) ? null : worker.fetchResourceWithException(ValueSet.class, uri);
    if (vs != null) {
        ValueSetExpansionOutcome vse = worker.expandVS(vs, true, false);
        if (vse.getError() != null)
            throw new FHIRException(vse.getError());
        CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
        for (ValueSetExpansionContainsComponent t : vse.getValueset().getExpansion().getContains()) {
            if (t.hasCode())
                b.append(t.getCode());
            if (code.equals(t.getCode()) && t.hasSystem()) {
                system = t.getSystem();
                display = t.getDisplay();
                break;
            }
            if (code.equalsIgnoreCase(t.getDisplay()) && t.hasSystem()) {
                system = t.getSystem();
                display = t.getDisplay();
                break;
            }
        }
        if (system == null)
            throw new FHIRException("The code '" + code + "' is not in the value set '" + uri + "' (valid codes: " + b.toString() + "; also checked displays)");
    } else
        system = uri;
    ValidationResult vr = worker.validateCode(system, code, null);
    if (vr != null && vr.getDisplay() != null)
        display = vr.getDisplay();
    return new Coding().setSystem(system).setCode(code).setDisplay(display);
}

Example 14 with ValidationResult

use of org.hl7.fhir.r5.context.IWorkerContext.ValidationResult in project org.hl7.fhir.core by hapifhir.

the class TerminologyCache method load.

private void load() throws FHIRException {
    for (String fn : new File(folder).list()) {
        if (fn.endsWith(".cache") && !fn.equals("validation.cache")) {
            int c = 0;
            try {
                String title = fn.substring(0, fn.lastIndexOf("."));
                NamedCache nc = new NamedCache();
                nc.name = title;
                caches.put(title, nc);
                String src = TextFile.fileToString(Utilities.path(folder, fn));
                if (src.startsWith("?"))
                    src = src.substring(1);
                int i = src.indexOf(ENTRY_MARKER);
                while (i > -1) {
                    c++;
                    String s = src.substring(0, i);
                    src = src.substring(i + ENTRY_MARKER.length() + 1);
                    i = src.indexOf(ENTRY_MARKER);
                    if (!Utilities.noString(s)) {
                        int j = s.indexOf(BREAK);
                        String q = s.substring(0, j);
                        String p = s.substring(j + BREAK.length() + 1).trim();
                        CacheEntry ce = new CacheEntry();
                        ce.persistent = true;
                        ce.request = q;
                        boolean e = p.charAt(0) == 'e';
                        p = p.substring(3);
                        JsonObject o = (JsonObject) new com.google.gson.JsonParser().parse(p);
                        String error = loadJS(o.get("error"));
                        if (e) {
                            if (o.has("valueSet"))
                                ce.e = new ValueSetExpansionOutcome((ValueSet) new JsonParser().parse(o.getAsJsonObject("valueSet")), error, TerminologyServiceErrorClass.UNKNOWN);
                            else
                                ce.e = new ValueSetExpansionOutcome(error, TerminologyServiceErrorClass.UNKNOWN);
                        } else {
                            String t = loadJS(o.get("severity"));
                            IssueSeverity severity = t == null ? null : IssueSeverity.fromCode(t);
                            String display = loadJS(o.get("display"));
                            String code = loadJS(o.get("code"));
                            String system = loadJS(o.get("system"));
                            String definition = loadJS(o.get("definition"));
                            t = loadJS(o.get("class"));
                            TerminologyServiceErrorClass errorClass = t == null ? null : TerminologyServiceErrorClass.valueOf(t);
                            ce.v = new ValidationResult(severity, error, system, new ConceptDefinitionComponent().setDisplay(display).setDefinition(definition).setCode(code)).setErrorClass(errorClass);
                        }
                        nc.map.put(String.valueOf(hashNWS(ce.request)), ce);
                        nc.list.add(ce);
                    }
                }
            } catch (Exception e) {
                throw new FHIRException("Error loading " + fn + ": " + e.getMessage() + " entry " + c, e);
            }
        }
    }
}

Example 15 with ValidationResult

use of org.hl7.fhir.r5.context.IWorkerContext.ValidationResult in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method describeCoded.

private Piece describeCoded(HierarchicalTableGenerator gen, DataType fixed) {
    if (fixed instanceof Coding) {
        Coding c = (Coding) fixed;
        ValidationResult vr = context.validateCode(terminologyServiceOptions, c.getSystem(), c.getVersion(), c.getCode(), c.getDisplay());
        if (vr.getDisplay() != null)
            return gen.new Piece(null, " (" + vr.getDisplay() + ")", null).addStyle("color: darkgreen");
    } else if (fixed instanceof CodeableConcept) {
        CodeableConcept cc = (CodeableConcept) fixed;
        for (Coding c : cc.getCoding()) {
            ValidationResult vr = context.validateCode(terminologyServiceOptions, c.getSystem(), c.getVersion(), c.getCode(), c.getDisplay());
            if (vr.getDisplay() != null)
                return gen.new Piece(null, " (" + vr.getDisplay() + ")", null).addStyle("color: darkgreen");
        }
    }
    return null;
}