Examples with CapabilityStatement org.hl7.fhir.r5.model.CapabilityStatement used on opensource projects

Example 56 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project org.hl7.fhir.core by hapifhir.

the class TerminologyCacheTests method testCachePersistence.

@Test
public void testCachePersistence() throws IOException, URISyntaxException {
    Object lock = new Object();
    Path tempCacheDirectory = createTempCacheDirectory();
    ValueSet valueSet = new ValueSet();
    valueSet.setUrl("dummyValueSetURL");
    TerminologyCapabilities terminologyCapabilities = new TerminologyCapabilities();
    terminologyCapabilities.getExpansion().setParameter(Arrays.asList());
    CapabilityStatement.CapabilityStatementSoftwareComponent software = new CapabilityStatement.CapabilityStatementSoftwareComponent();
    software.setVersion("dummyVersion");
    CapabilityStatement capabilityStatement = new CapabilityStatement();
    capabilityStatement.setSoftware(software);
    Coding coding = new Coding();
    coding.setCode("dummyCode");
    CodeableConcept concept = new CodeableConcept();
    concept.addCoding(new Coding().setCode("dummyCode"));
    ValueSet ccvalueSet = new ValueSet();
    // Add dummy results to the cache
    TerminologyCache terminologyCacheA = new TerminologyCache(lock, tempCacheDirectory.toString());
    terminologyCacheA.cacheTerminologyCapabilities(terminologyCapabilities);
    terminologyCacheA.cacheCapabilityStatement(capabilityStatement);
    IWorkerContext.ValidationResult codingResultA = new IWorkerContext.ValidationResult(ValidationMessage.IssueSeverity.INFORMATION, "dummyInfo");
    TerminologyCache.CacheToken codingTokenA = terminologyCacheA.generateValidationToken(CacheTestUtils.validationOptions, coding, valueSet);
    terminologyCacheA.cacheValidation(codingTokenA, codingResultA, true);
    IWorkerContext.ValidationResult codeableConceptResultA = new IWorkerContext.ValidationResult(ValidationMessage.IssueSeverity.INFORMATION, "dummyInfo");
    TerminologyCache.CacheToken codeableConceptTokenA = terminologyCacheA.generateValidationToken(CacheTestUtils.validationOptions, concept, valueSet);
    terminologyCacheA.cacheValidation(codeableConceptTokenA, codeableConceptResultA, true);
    TerminologyCache.CacheToken expansionTokenA = terminologyCacheA.generateExpandToken(valueSet, true);
    ValueSetExpander.ValueSetExpansionOutcome expansionOutcomeA = new ValueSetExpander.ValueSetExpansionOutcome(valueSet);
    terminologyCacheA.cacheExpansion(expansionTokenA, expansionOutcomeA, true);
    // Check that the in-memory cache is returning what we put in
    {
        assertEquals(terminologyCapabilities, terminologyCacheA.getTerminologyCapabilities());
        assertEquals(capabilityStatement, terminologyCacheA.getCapabilityStatement());
        assertValidationResultEquals(codingResultA, terminologyCacheA.getValidation(codingTokenA));
        assertValidationResultEquals(codeableConceptResultA, terminologyCacheA.getValidation(codeableConceptTokenA));
        assertExpansionOutcomeEquals(expansionOutcomeA, terminologyCacheA.getExpansion(expansionTokenA));
    }
    // Create another cache using the same directory, and check that it gives the same results.
    {
        TerminologyCache terminologyCacheB = new TerminologyCache(lock, tempCacheDirectory.toString());
        assertCanonicalResourceEquals(terminologyCapabilities, terminologyCacheB.getTerminologyCapabilities());
        assertCanonicalResourceEquals(capabilityStatement, terminologyCacheB.getCapabilityStatement());
        assertValidationResultEquals(codingResultA, terminologyCacheB.getValidation(terminologyCacheA.generateValidationToken(CacheTestUtils.validationOptions, coding, valueSet)));
        assertValidationResultEquals(codeableConceptResultA, terminologyCacheB.getValidation(terminologyCacheA.generateValidationToken(CacheTestUtils.validationOptions, concept, valueSet)));
        assertExpansionOutcomeEquals(expansionOutcomeA, terminologyCacheB.getExpansion(terminologyCacheA.generateExpandToken(valueSet, true)));
    }
    deleteTempCacheDirectory(tempCacheDirectory);
}

Example 57 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project pathling by aehrc.

the class ConformanceProvider method getServerConformance.

@Override
@Metadata(cacheMillis = 0)
public CapabilityStatement getServerConformance(@Nullable final HttpServletRequest httpServletRequest, @Nullable final RequestDetails requestDetails) {
    log.debug("Received request for server capabilities");
    final CapabilityStatement capabilityStatement = new CapabilityStatement();
    capabilityStatement.setUrl(getCapabilityUri());
    capabilityStatement.setVersion(version.getBuildVersion().orElse(UNKNOWN_VERSION));
    capabilityStatement.setTitle("Pathling FHIR API");
    capabilityStatement.setName("pathling-fhir-api");
    capabilityStatement.setStatus(PublicationStatus.ACTIVE);
    capabilityStatement.setExperimental(true);
    capabilityStatement.setPublisher("Australian e-Health Research Centre, CSIRO");
    capabilityStatement.setCopyright("Dedicated to the public domain via CC0: https://creativecommons.org/publicdomain/zero/1.0/");
    capabilityStatement.setKind(CapabilityStatementKind.INSTANCE);
    final CapabilityStatementSoftwareComponent software = new CapabilityStatementSoftwareComponent(new StringType("Pathling"));
    software.setVersion(version.getDescriptiveVersion().orElse(UNKNOWN_VERSION));
    capabilityStatement.setSoftware(software);
    final CapabilityStatementImplementationComponent implementation = new CapabilityStatementImplementationComponent(new StringType(configuration.getImplementationDescription()));
    final Optional<String> serverBase = getServerBase(Optional.ofNullable(httpServletRequest));
    serverBase.ifPresent(implementation::setUrl);
    capabilityStatement.setImplementation(implementation);
    capabilityStatement.setFhirVersion(FHIRVersion._4_0_1);
    capabilityStatement.setFormat(Arrays.asList(new CodeType("json"), new CodeType("xml")));
    capabilityStatement.setRest(buildRestComponent());
    return capabilityStatement;
}

Example 58 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project gpconnect-demonstrator by nhsconnect.

the class GpConnectServerCapabilityStatementProvider method getServerConformance.

@Override
public CapabilityStatement getServerConformance(HttpServletRequest theRequest) {
    final boolean FROM_JSON = true;
    CapabilityStatement capabilityStatement = null;
    if (!FROM_JSON) {
        // Get the automatically generated statement
        capabilityStatement = super.getServerConformance(theRequest);
        // added at 1.2.2 force overwrite the default entries which are not correct
        for (CapabilityStatement.CapabilityStatementRestComponent st : capabilityStatement.getRest()) {
            for (CapabilityStatement.CapabilityStatementRestOperationComponent operation : st.getOperation()) {
                String opPlusDollar = "$" + operation.getName();
                switch(opPlusDollar) {
                    case REGISTER_PATIENT_OPERATION_NAME:
                        operation.getDefinition().setReference(OD_GPC_REGISTER_PATIENT);
                        break;
                    case GET_STRUCTURED_RECORD_OPERATION_NAME:
                        operation.getDefinition().setReference(OD_GPC_GET_STRUCTURED_RECORD);
                        break;
                }
            }
        }
    } else {
        try {
            // 1.2.6 #316
            String interactionId = theRequest.getHeader(SSP_INTERACTIONID);
            String capabilityFile = null;
            switch(interactionId) {
                case REST_READ_STRUCTURED_METADATA:
                    capabilityFile = "structured_capability.json";
                    break;
                default:
                    capabilityFile = "capability.json";
            }
            // read a json capability file
            String capabilityJson = new String(Files.readAllBytes(Paths.get(FhirRequestGenericIntercepter.getConfigPath() + "/" + capabilityFile)));
            FhirContext ctx = FhirContext.forDstu3();
            capabilityStatement = (CapabilityStatement) ctx.newJsonParser().parseResource(capabilityJson);
        } catch (IOException ex) {
            return null;
        }
    }
    // And add additional required information
    capabilityStatement.setVersion(SystemVariable.VERSION);
    capabilityStatement.setDescription("This server implements the GP Connect API version " + SystemVariable.VERSION);
    capabilityStatement.setName("GP Connect");
    capabilityStatement.setCopyright("Copyright NHS Digital 2018");
    capabilityStatement.getSoftware().setReleaseDate(Date.valueOf(LocalDate.parse("2017-09-27")));
    return capabilityStatement;
}

Example 59 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project clinical_quality_language by cqframework.

the class ElmDataRequirement method applyJoinRequirementTo.

private void applyJoinRequirementTo(ElmJoinRequirement joinRequirement, Retrieve retrieve, ElmRequirementsContext context, ElmQueryRequirement queryRequirements) {
    ElmDataRequirement leftRequirement = queryRequirements.getDataRequirement(joinRequirement.getLeftProperty().getSource());
    ElmDataRequirement rightRequirement = queryRequirements.getDataRequirement(joinRequirement.getRightProperty().getSource());
    if (leftRequirement != null && rightRequirement != null) {
        Retrieve leftRetrieve = leftRequirement.getRetrieve();
        Retrieve rightRetrieve = rightRequirement.getRetrieve();
        // Only report include possibility if the retrieves can both be tied to the data model
        if (leftRetrieve.getDataType() != null && rightRetrieve.getDataType() != null) {
            ClassType leftRetrieveType = getRetrieveType(context, leftRetrieve);
            ClassType rightRetrieveType = getRetrieveType(context, rightRetrieve);
            if (leftRetrieveType != null && rightRetrieveType != null) {
                SearchType leftSearch;
                SearchType rightSearch;
                for (SearchType search : leftRetrieveType.getSearches()) {
                    if (joinRequirement.getLeftProperty().getProperty().getPath().startsWith(search.getPath())) {
                        if (search.getType().isCompatibleWith(rightRetrieveType)) {
                            leftSearch = search;
                            break;
                        }
                    }
                }
                for (SearchType search : rightRetrieveType.getSearches()) {
                    if (joinRequirement.getRightProperty().getProperty().getPath().startsWith(search.getPath())) {
                        if (search.getType().isCompatibleWith(leftRetrieveType)) {
                            rightSearch = search;
                            break;
                        }
                    }
                }
            // Search from the model info should be used to inform the selection, but will in general resolve to multiple choices
            // May be a choice better left to the capabilityStatement-informed planning phase anyway
            }
            // In the absence of search information, either of these formulations is correct, favor primary query sources over withs
            if (leftRetrieve.getLocalId() == null) {
                leftRetrieve.setLocalId(context.generateLocalId());
            }
            if (rightRetrieve.getLocalId() == null) {
                rightRetrieve.setLocalId(context.generateLocalId());
            }
            if (rightRequirement.getQuerySource() instanceof With) {
                leftRetrieve.getInclude().add(new IncludeElement().withIncludeFrom(rightRetrieve.getLocalId()).withRelatedDataType(rightRetrieve.getDataType()).withRelatedProperty(joinRequirement.getLeftProperty().getProperty().getPath()).withIsReverse(false));
                rightRetrieve.setIncludedIn(leftRetrieve.getLocalId());
            } else {
                rightRetrieve.getInclude().add(new IncludeElement().withIncludeFrom(leftRetrieve.getLocalId()).withRelatedDataType(leftRetrieve.getDataType()).withRelatedProperty(joinRequirement.getRightProperty().getProperty().getPath()).withIsReverse(false));
                leftRetrieve.setIncludedIn(rightRetrieve.getLocalId());
            }
        }
    }
}

Example 60 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project dpc-app by CMSgov.

the class Capabilities method buildCapabilities.

private static CapabilityStatement buildCapabilities(String baseURL) {
    final PropertiesProvider pp = new PropertiesProvider();
    DateTimeType releaseDate = DateTimeType.parseV3(pp.getBuildTimestamp().format(FHIRFormatters.DATE_TIME_FORMATTER));
    logger.debug("Reading {} from resources", CAP_STATEMENT);
    try (InputStream resource = Capabilities.class.getClassLoader().getResourceAsStream(CAP_STATEMENT)) {
        if (resource == null) {
            throw new MissingResourceException("Cannot find Capability Statement", Capabilities.class.getName(), CAP_STATEMENT);
        }
        final CapabilityStatement capabilityStatement = FhirContext.forDstu3().newJsonParser().parseResource(CapabilityStatement.class, resource);
        return capabilityStatement.setVersion(pp.getApplicationVersion()).setImplementation(generateImplementationComponent(baseURL)).setSoftware(generateSoftwareComponent(releaseDate, pp.getApplicationVersion()));
    } catch (IOException e) {
        throw new IllegalStateException("Unable to read capability statement", e);
    }
}