Examples with SearchType org.hl7.cql.model.SearchType used on opensource projects

Example 1 with SearchType

use of org.hl7.cql.model.SearchType in project kindling by HL7.

the class OldSpreadsheetParser method readSearchParams.

private void readSearchParams(ResourceDefn root2, Sheet sheet, boolean forProfile) throws Exception {
    if (sheet != null) {
        for (int row = 0; row < sheet.rows.size(); row++) {
            if (!sheet.hasColumn(row, "Name"))
                throw new Exception("Search Param has no name " + getLocation(row));
            String n = sheet.getColumn(row, "Name");
            if (!n.startsWith("!")) {
                if (!sheet.hasColumn(row, "Type"))
                    throw new Exception("Search Param " + root2.getName() + "/" + n + " has no type " + getLocation(row));
                if (n.endsWith("-before") || n.endsWith("-after"))
                    throw new Exception("Search Param " + root2.getName() + "/" + n + " includes relative time " + getLocation(row));
                if (root2.getSearchParams().containsKey(n))
                    throw new Exception("Search Param " + root2.getName() + "/" + n + ": duplicate name " + getLocation(row));
                String d = sheet.getColumn(row, "Description");
                SearchType t = readSearchType(sheet.getColumn(row, "Type"), row);
                SearchParameter.XPathUsageType pu = readSearchXPathUsage(sheet.getColumn(row, "Path Usage"), row);
                if (Utilities.noString(sheet.getColumn(row, "Path")) && !root2.getName().equals("Resource") && !root2.getName().equals("DomainResource"))
                    throw new Exception("Search Param " + root2.getName() + "/" + n + " has no path at " + getLocation(row));
                SearchParameterDefn sp = null;
                if (t == SearchType.composite) {
                    List<CompositeDefinition> pn = new ArrayList<CompositeDefinition>();
                    if (Utilities.noString(d))
                        throw new Exception("Search Param " + root2.getName() + "/" + n + " has no description " + getLocation(row));
                    String[] pl = sheet.getColumn(row, "Path").split("\\&");
                    String[] pe = sheet.getColumn(row, "Expression").split("\\;");
                    if (pe.length != pl.length + 1)
                        throw new Exception("Composite Search Param " + root2.getName() + "/" + n + " needs expressions " + getLocation(row));
                    int i = 0;
                    for (String pi : pl) {
                        String p = pi.trim();
                        i++;
                        String e = pe[i].trim();
                        if (!root2.getSearchParams().containsKey(p)) {
                            boolean found = false;
                            if (p.endsWith("[x]"))
                                for (String pan : root2.getSearchParams().keySet()) {
                                    if (pan.startsWith(p.substring(0, p.length() - 3)))
                                        found = true;
                                }
                            if (!found)
                                throw new Exception("Composite Search Param " + root2.getName() + "/" + n + "  refers to an unknown component " + p + " at " + getLocation(row));
                        }
                        pn.add(new CompositeDefinition(p, e));
                    }
                    StandardsStatus ss = root2.getStatus();
                    if (!Utilities.noString(sheet.getColumn(row, "Standards-Status")))
                        ss = StandardsStatus.fromCode(sheet.getColumn(row, "Standards-Status"));
                    sp = new SearchParameterDefn(n, d, t, pu, ss);
                    sp.setExpression(pe[0].trim());
                    sp.getComposites().addAll(pn);
                } else {
                    List<String> pn = new ArrayList<String>();
                    String xp = sheet.getColumn(row, "XPath");
                    String[] pl = sheet.getColumn(row, "Path").split("\\|");
                    boolean hierarchy = false;
                    for (String pi : pl) {
                        String p = pi.trim();
                        ElementDefn e = null;
                        if (!Utilities.noString(p) && !p.startsWith("!") && !p.startsWith("Extension{") && definitions != null) {
                            e = root2.getRoot().getElementForPath(trimIndexes(p), definitions, "search param", true, true);
                        }
                        if (e != null && e.hasHierarchy() && e.getHierarchy())
                            hierarchy = true;
                        if (Utilities.noString(d) && e != null)
                            d = e.getShortDefn();
                        if (p.startsWith("Extension(")) {
                            String url = extractExtensionUrl(p);
                            StructureDefinition ex = context.fetchResource(StructureDefinition.class, url);
                            if (ex == null)
                                throw new Exception("Search Param " + root2.getName() + "/" + n + " refers to unknown extension '" + url + "' " + getLocation(row));
                            if (Utilities.noString(d))
                                d = ex.getDescription();
                            pn.add(p);
                        }
                        if (d == null)
                            throw new Exception("Search Param " + root2.getName() + "/" + n + " has no description " + getLocation(row));
                        if (e != null)
                            pn.add(p);
                        if (t == SearchType.reference) {
                            if (e == null && !forProfile && !sheet.hasColumn(row, "Target Types"))
                                throw new Exception("Search Param " + root2.getName() + "/" + n + " of type reference has wrong path '" + p + "' at " + getLocation(row));
                            if (!forProfile && e != null && (!e.hasType("Reference")) && (!e.hasType("canonical")) && (!e.hasType("Resource")))
                                throw new Exception("Search Param " + root2.getName() + "/" + n + " wrong type. The search type is reference, but the element type is " + e.typeCode());
                        } else {
                            if (e != null && e.hasOnlyType("Reference"))
                                throw new Exception("Search Param " + root2.getName() + "/" + n + " wrong type. The search type is " + t.toString() + ", but the element type is " + e.typeCode());
                            if (t == SearchType.uri) {
                                if (e != null && !(e.typeCode().equals("uri") || e.typeCode().equals("url") || e.typeCode().equals("oid") || e.typeCode().startsWith("canonical(")))
                                    throw new Exception("Search Param " + root2.getName() + "/" + n + " wrong type. The search type is " + t.toString() + ", but the element type is " + e.typeCode());
                            } else {
                                if (e != null && e.typeCode().equals("uri"))
                                    throw new Exception("Search Param " + root2.getName() + "/" + n + " wrong type. The search type is " + t.toString() + ", but the element type is " + e.typeCode());
                            }
                        }
                    }
                    if (!forProfile && t == SearchType.reference && pn.size() == 0 && !sheet.hasColumn(row, "Target Types"))
                        throw new Exception("Search Param " + root2.getName() + "/" + n + " of type reference has no path(s) " + getLocation(row));
                    StandardsStatus ss = root2.getStatus();
                    if (!Utilities.noString(sheet.getColumn(row, "Standards-Status")))
                        ss = StandardsStatus.fromCode(sheet.getColumn(row, "Standards-Status"));
                    sp = new SearchParameterDefn(n, d, t, pu, ss);
                    sp.getPaths().addAll(pn);
                    if (!Utilities.noString(xp))
                        sp.setXPath(xp);
                    if (!Utilities.noString(sheet.getColumn(row, "Expression")))
                        sp.setExpression(sheet.getColumn(row, "Expression"));
                    if (!Utilities.noString(sheet.getColumn(row, "Target Types"))) {
                        sp.setManualTypes(sheet.getColumn(row, "Target Types").split("\\,"));
                    }
                    sp.setHierarchy(hierarchy);
                    CommonSearchParameter csp = definitions.getCommonSearchParameters().get(root2.getName() + "::" + n);
                    if (csp != null)
                        for (String s : csp.getResources()) {
                            if (!root2.getName().equals(s))
                                sp.getOtherResources().add(s);
                        }
                }
                root2.getSearchParams().put(n, sp);
            }
        }
    }
}

Example 2 with SearchType

use of org.hl7.cql.model.SearchType in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeOperationDefinitionOperationDefinitionParameterComponent.

protected void composeOperationDefinitionOperationDefinitionParameterComponent(Complex parent, String parentType, String name, OperationDefinition.OperationDefinitionParameterComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "parameter", name, element, index);
    if (element.hasNameElement())
        composeCode(t, "OperationDefinition", "name", element.getNameElement(), -1);
    if (element.hasUseElement())
        composeEnum(t, "OperationDefinition", "use", element.getUseElement(), -1);
    if (element.hasMinElement())
        composeInteger(t, "OperationDefinition", "min", element.getMinElement(), -1);
    if (element.hasMaxElement())
        composeString(t, "OperationDefinition", "max", element.getMaxElement(), -1);
    if (element.hasDocumentationElement())
        composeString(t, "OperationDefinition", "documentation", element.getDocumentationElement(), -1);
    if (element.hasTypeElement())
        composeCode(t, "OperationDefinition", "type", element.getTypeElement(), -1);
    if (element.hasSearchTypeElement())
        composeEnum(t, "OperationDefinition", "searchType", element.getSearchTypeElement(), -1);
    if (element.hasProfile())
        composeReference(t, "OperationDefinition", "profile", element.getProfile(), -1);
    if (element.hasBinding())
        composeOperationDefinitionOperationDefinitionParameterBindingComponent(t, "OperationDefinition", "binding", element.getBinding(), -1);
    for (int i = 0; i < element.getPart().size(); i++) composeOperationDefinitionOperationDefinitionParameterComponent(t, "OperationDefinition", "part", element.getPart().get(i), i);
}

Example 3 with SearchType

use of org.hl7.cql.model.SearchType in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeOperationDefinitionOperationDefinitionParameterComponent.

protected void composeOperationDefinitionOperationDefinitionParameterComponent(Complex parent, String parentType, String name, OperationDefinition.OperationDefinitionParameterComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "parameter", name, element, index);
    if (element.hasNameElement())
        composeCode(t, "OperationDefinition", "name", element.getNameElement(), -1);
    if (element.hasUseElement())
        composeEnum(t, "OperationDefinition", "use", element.getUseElement(), -1);
    if (element.hasMinElement())
        composeInteger(t, "OperationDefinition", "min", element.getMinElement(), -1);
    if (element.hasMaxElement())
        composeString(t, "OperationDefinition", "max", element.getMaxElement(), -1);
    if (element.hasDocumentationElement())
        composeString(t, "OperationDefinition", "documentation", element.getDocumentationElement(), -1);
    if (element.hasTypeElement())
        composeCode(t, "OperationDefinition", "type", element.getTypeElement(), -1);
    for (int i = 0; i < element.getTargetProfile().size(); i++) composeCanonical(t, "OperationDefinition", "targetProfile", element.getTargetProfile().get(i), i);
    if (element.hasSearchTypeElement())
        composeEnum(t, "OperationDefinition", "searchType", element.getSearchTypeElement(), -1);
    if (element.hasBinding())
        composeOperationDefinitionOperationDefinitionParameterBindingComponent(t, "OperationDefinition", "binding", element.getBinding(), -1);
    for (int i = 0; i < element.getReferencedFrom().size(); i++) composeOperationDefinitionOperationDefinitionParameterReferencedFromComponent(t, "OperationDefinition", "referencedFrom", element.getReferencedFrom().get(i), i);
    for (int i = 0; i < element.getPart().size(); i++) composeOperationDefinitionOperationDefinitionParameterComponent(t, "OperationDefinition", "part", element.getPart().get(i), i);
}

Example 4 with SearchType

use of org.hl7.cql.model.SearchType in project clinical_quality_language by cqframework.

the class ElmDataRequirement method applyJoinRequirementTo.

private void applyJoinRequirementTo(ElmJoinRequirement joinRequirement, Retrieve retrieve, ElmRequirementsContext context, ElmQueryRequirement queryRequirements) {
    ElmDataRequirement leftRequirement = queryRequirements.getDataRequirement(joinRequirement.getLeftProperty().getSource());
    ElmDataRequirement rightRequirement = queryRequirements.getDataRequirement(joinRequirement.getRightProperty().getSource());
    if (leftRequirement != null && rightRequirement != null) {
        Retrieve leftRetrieve = leftRequirement.getRetrieve();
        Retrieve rightRetrieve = rightRequirement.getRetrieve();
        // Only report include possibility if the retrieves can both be tied to the data model
        if (leftRetrieve.getDataType() != null && rightRetrieve.getDataType() != null) {
            ClassType leftRetrieveType = getRetrieveType(context, leftRetrieve);
            ClassType rightRetrieveType = getRetrieveType(context, rightRetrieve);
            if (leftRetrieveType != null && rightRetrieveType != null) {
                SearchType leftSearch;
                SearchType rightSearch;
                for (SearchType search : leftRetrieveType.getSearches()) {
                    if (joinRequirement.getLeftProperty().getProperty().getPath().startsWith(search.getPath())) {
                        if (search.getType().isCompatibleWith(rightRetrieveType)) {
                            leftSearch = search;
                            break;
                        }
                    }
                }
                for (SearchType search : rightRetrieveType.getSearches()) {
                    if (joinRequirement.getRightProperty().getProperty().getPath().startsWith(search.getPath())) {
                        if (search.getType().isCompatibleWith(leftRetrieveType)) {
                            rightSearch = search;
                            break;
                        }
                    }
                }
            // Search from the model info should be used to inform the selection, but will in general resolve to multiple choices
            // May be a choice better left to the capabilityStatement-informed planning phase anyway
            }
            // In the absence of search information, either of these formulations is correct, favor primary query sources over withs
            if (leftRetrieve.getLocalId() == null) {
                leftRetrieve.setLocalId(context.generateLocalId());
            }
            if (rightRetrieve.getLocalId() == null) {
                rightRetrieve.setLocalId(context.generateLocalId());
            }
            if (rightRequirement.getQuerySource() instanceof With) {
                leftRetrieve.getInclude().add(new IncludeElement().withIncludeFrom(rightRetrieve.getLocalId()).withRelatedDataType(rightRetrieve.getDataType()).withRelatedProperty(joinRequirement.getLeftProperty().getProperty().getPath()).withIsReverse(false));
                rightRetrieve.setIncludedIn(leftRetrieve.getLocalId());
            } else {
                rightRetrieve.getInclude().add(new IncludeElement().withIncludeFrom(leftRetrieve.getLocalId()).withRelatedDataType(leftRetrieve.getDataType()).withRelatedProperty(joinRequirement.getRightProperty().getProperty().getPath()).withIsReverse(false));
                leftRetrieve.setIncludedIn(rightRetrieve.getLocalId());
            }
        }
    }
}

Example 5 with SearchType

use of org.hl7.cql.model.SearchType in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeOperationDefinitionOperationDefinitionParameterComponent.

protected void composeOperationDefinitionOperationDefinitionParameterComponent(Complex parent, String parentType, String name, OperationDefinition.OperationDefinitionParameterComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "parameter", name, element, index);
    if (element.hasNameElement())
        composeCode(t, "OperationDefinition", "name", element.getNameElement(), -1);
    if (element.hasUseElement())
        composeEnum(t, "OperationDefinition", "use", element.getUseElement(), -1);
    if (element.hasMinElement())
        composeInteger(t, "OperationDefinition", "min", element.getMinElement(), -1);
    if (element.hasMaxElement())
        composeString(t, "OperationDefinition", "max", element.getMaxElement(), -1);
    if (element.hasDocumentationElement())
        composeString(t, "OperationDefinition", "documentation", element.getDocumentationElement(), -1);
    if (element.hasTypeElement())
        composeCode(t, "OperationDefinition", "type", element.getTypeElement(), -1);
    if (element.hasSearchTypeElement())
        composeEnum(t, "OperationDefinition", "searchType", element.getSearchTypeElement(), -1);
    if (element.hasProfile())
        composeReference(t, "OperationDefinition", "profile", element.getProfile(), -1);
    if (element.hasBinding())
        composeOperationDefinitionOperationDefinitionParameterBindingComponent(t, "OperationDefinition", "binding", element.getBinding(), -1);
    for (int i = 0; i < element.getPart().size(); i++) composeOperationDefinitionOperationDefinitionParameterComponent(t, "OperationDefinition", "part", element.getPart().get(i), i);
}