Examples with Composition org.hl7.fhir.r5.model.Composition used on opensource projects

Example 61 with Composition

use of org.hl7.fhir.r5.model.Composition in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeCompositionCompositionRelatesToComponent.

protected void composeCompositionCompositionRelatesToComponent(Complex parent, String parentType, String name, Composition.CompositionRelatesToComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "relatesTo", name, element, index);
    if (element.hasCodeElement())
        composeEnum(t, "Composition", "code", element.getCodeElement(), -1);
    if (element.hasTarget())
        composeType(t, "Composition", "target", element.getTarget(), -1);
}

Example 62 with Composition

use of org.hl7.fhir.r5.model.Composition in project eCRNow by drajer-health.

the class EicrCompositionGenerator method convertR4FhirBundletoCdaEicr.

public static Composition convertR4FhirBundletoCdaEicr(R4FhirData data) {
    Composition comp = new Composition();
    // Add version number extension.
    comp.addExtension(FhirGeneratorConstants.COMP_CLIN_DOC_VERSION_NUM_URL, new StringType(String.valueOf(FhirGeneratorConstants.VERSION_NUM)));
    // Add Type
    comp.setType(FhirGeneratorUtils.getCodeableConcept(FhirGeneratorConstants.LOINC_CS_URL, FhirGeneratorConstants.COMP_TYPE_CODE, FhirGeneratorConstants.COMP_TYPE_CODE_DISPLAY));
    // Setup Patient.
    comp.getSubject().setResource(data.getPatient());
    // Setup Encounter
    if (data.getEncounter() != null)
        comp.getEncounter().setResource(data.getEncounter());
    // Add Authors.
    List<Reference> auths = new ArrayList<>();
    // Add organization
    if (data.getOrganization() != null)
        auths.add(FhirGeneratorUtils.getReference(data.getOrganization()));
    if (data.getPractitioner() != null)
        auths.add(FhirGeneratorUtils.getReference(data.getPractitioner()));
    comp.setAuthor(auths);
    // Add Reason for Visit Section;
    SectionComponent rvs = FhirGeneratorUtils.getSectionComponent(FhirGeneratorConstants.LOINC_CS_URL, FhirGeneratorConstants.REASON_FOR_VISIT_CODE, FhirGeneratorConstants.REASON_FOR_VISIT_CODE_DISPLAY);
    // Set the Section Code Display to be the narrative text.
    rvs.getCode().setTextElement(new StringType(FhirGeneratorUtils.getReasonForVisitNarrativeText(data.getEncounter())));
    comp.getSection().add(rvs);
    return comp;
}

Example 63 with Composition

use of org.hl7.fhir.r5.model.Composition in project nia-patient-switching-standard-adaptor by NHSDigital.

the class DiagnosticReportMapper method mapResources.

@Override
public List<DiagnosticReport> mapResources(RCMRMT030101UK04EhrExtract ehrExtract, Patient patient, List<Encounter> encounters, String practiseCode) {
    return mapEhrExtractToFhirResource(ehrExtract, (extract, composition, component) -> extractAllCompoundStatements(component).filter(Objects::nonNull).filter(ResourceFilterUtil::isDiagnosticReport).map(compoundStatement -> {
        DiagnosticReport diagnosticReport = createDiagnosticReport(compoundStatement, patient, composition, encounters, practiseCode);
        getIssued(ehrExtract, compoundStatement, composition).ifPresent(diagnosticReport::setIssuedElement);
        return diagnosticReport;
    })).toList();
}

Example 64 with Composition

use of org.hl7.fhir.r5.model.Composition in project nia-patient-switching-standard-adaptor by NHSDigital.

the class ConditionMapper method getCondition.

private Condition getCondition(RCMRMT030101UK04EhrExtract ehrExtract, Patient patient, List<Encounter> encounters, RCMRMT030101UK04EhrComposition composition, RCMRMT030101UK04LinkSet linkSet, String practiseCode) {
    String id = linkSet.getId().getRoot();
    Condition condition = (Condition) new Condition().addIdentifier(buildIdentifier(id, practiseCode)).addCategory(generateCategory()).setId(id).setMeta(generateMeta(META_PROFILE));
    buildClinicalStatus(linkSet.getCode()).ifPresentOrElse(condition::setClinicalStatus, () -> {
        condition.setClinicalStatus(ACTIVE);
        condition.addNote(new Annotation(new StringType(DEFAULT_CLINICAL_STATUS)));
    });
    condition.setSubject(new Reference(patient));
    condition.addExtension(buildProblemSignificance(linkSet.getCode()));
    generateAnnotationToMinor(linkSet.getCode()).ifPresent(condition::addNote);
    buildContext(composition, encounters).ifPresent(condition::setContext);
    buildOnsetDateTimeType(linkSet).ifPresent(condition::setOnset);
    buildAbatementDateTimeType(linkSet.getEffectiveTime()).ifPresent(condition::setAbatement);
    buildAssertedDateTimeType(composition).ifPresentOrElse(condition::setAssertedDateElement, () -> condition.setAssertedDateElement(parseToDateTimeType(ehrExtract.getAvailabilityTime().getValue())));
    composition.getParticipant2().stream().findFirst().ifPresent(participant2 -> condition.setAsserter(new Reference(new IdType(ResourceType.Practitioner.name(), participant2.getAgentRef().getId().getRoot()))));
    return condition;
}