Examples with DateType org.hl7.fhir.r5.model.DateType used on opensource projects

Example 31 with DateType

use of org.hl7.fhir.r5.model.DateType in project org.hl7.fhir.core by hapifhir.

the class PatientRenderer method display.

@Override
public String display(ResourceWrapper pat) throws UnsupportedEncodingException, IOException {
    Identifier id = null;
    PropertyWrapper pw = getProperty(pat, "identifier");
    for (BaseWrapper t : pw.getValues()) {
        id = chooseId(id, (Identifier) t.getBase());
    }
    pw = getProperty(pat, "name");
    HumanName n = null;
    for (BaseWrapper t : pw.getValues()) {
        n = chooseName(n, (HumanName) t);
    }
    String gender = null;
    pw = getProperty(pat, "gender");
    if (valued(pw)) {
        pw.value().getBase().primitiveValue();
    }
    DateType dt = null;
    pw = getProperty(pat, "birthDate");
    if (valued(pw)) {
        dt = (DateType) pw.value().getBase();
    }
    return display(n, gender, dt, id);
}

Example 32 with DateType

use of org.hl7.fhir.r5.model.DateType in project pathling by aehrc.

the class DateLiteralPath method fromString.

/**
 * Returns a new instance, parsed from a FHIRPath literal.
 *
 * @param fhirPath The FHIRPath representation of the literal
 * @param context An input context that can be used to build a {@link Dataset} to represent the
 * literal
 * @return A new instance of {@link LiteralPath}
 * @throws ParseException if the literal is malformed
 */
public static DateLiteralPath fromString(@Nonnull final String fhirPath, @Nonnull final FhirPath context) throws ParseException {
    final String dateString = fhirPath.replaceFirst("^@", "");
    java.util.Date date;
    DateLiteralFormat format;
    // the year only format.
    try {
        date = DatePath.getFullDateFormat().parse(dateString);
        format = DateLiteralFormat.FULL;
    } catch (final ParseException e) {
        try {
            date = DatePath.getYearMonthDateFormat().parse(dateString);
            format = DateLiteralFormat.YEAR_MONTH_DATE;
        } catch (final ParseException ex) {
            date = DatePath.getYearOnlyDateFormat().parse(dateString);
            format = DateLiteralFormat.YEAR_ONLY;
        }
    }
    final DateLiteralPath result = new DateLiteralPath(context.getDataset(), context.getIdColumn(), new DateType(date));
    result.format = Optional.of(format);
    return result;
}

Example 33 with DateType

use of org.hl7.fhir.r5.model.DateType in project CRD by HL7-DaVinci.

the class CardBuilder method createSuggestionWithNote.

public static Suggestion createSuggestionWithNote(Card card, IBaseResource request, FhirComponentsT fhirComponents, String label, String description, boolean isRecommended, CoverageGuidance coverageGuidance) {
    Date now = new Date();
    Suggestion requestWithNoteSuggestion = new Suggestion();
    requestWithNoteSuggestion.setLabel(label);
    requestWithNoteSuggestion.setIsRecommended(isRecommended);
    List<Action> actionList = new ArrayList<>();
    // build the Annotation
    Annotation annotation = new Annotation();
    StringType author = new StringType();
    author.setValue(card.getSource().getLabel());
    annotation.setAuthor(author);
    String text = card.getSummary() + ": " + card.getDetail();
    annotation.setText(text);
    // set the date and time to now
    annotation.setTime(now);
    IBaseResource resource = FhirRequestProcessor.addNoteToRequest(request, annotation);
    try {
        // build the Extension with the coverage information
        Extension extension = new Extension();
        extension.setUrl("http://hl7.org/fhir/us/davinci-crd/StructureDefinition/ext-coverage-information");
        Extension coverageInfo = new Extension();
        coverageInfo.setUrl("coverageInfo").setValue(coverageGuidance.getCoding());
        extension.addExtension(coverageInfo);
        Extension coverageExtension = new Extension();
        Reference coverageReference = new Reference();
        // TODO: get the coverage from the prefetch and pass it into here instead of retrieving it from the request
        coverageReference.setReference(FhirRequestProcessor.getCoverageFromRequest(request).getReference());
        coverageExtension.setUrl("coverage").setValue(coverageReference);
        extension.addExtension(coverageExtension);
        Extension date = new Extension();
        date.setUrl("date").setValue(new DateType().setValue(now));
        extension.addExtension(date);
        Extension identifier = new Extension();
        String id = UUID.randomUUID().toString();
        identifier.setUrl("identifier").setValue(new StringType(id));
        extension.addExtension(identifier);
        resource = FhirRequestProcessor.addExtensionToRequest(resource, extension);
    } catch (NoCoverageException e) {
        logger.warn("No Coverage, discrete coverage extension will not be included: " + e.getMessage());
    }
    Action updateAction = new Action(fhirComponents);
    updateAction.setType(Action.TypeEnum.update);
    updateAction.setDescription(description);
    updateAction.setResource(resource);
    actionList.add(updateAction);
    requestWithNoteSuggestion.setActions(actionList);
    return requestWithNoteSuggestion;
}

Example 34 with DateType

use of org.hl7.fhir.r5.model.DateType in project gpconnect-demonstrator by nhsconnect.

the class MedicationAdministrationResourceProvider method getMedicationAdministrationsForPatientId.

@Search
public List<MedicationAdministration> getMedicationAdministrationsForPatientId(@RequiredParam(name = "patient") String patientId) {
    ArrayList<MedicationAdministration> medicationAdministrations = new ArrayList<>();
    List<MedicationAdministrationDetail> medicationAdministrationDetailList = medicationAdministrationSearch.findMedicationAdministrationForPatient(Long.parseLong(patientId));
    if (medicationAdministrationDetailList != null && !medicationAdministrationDetailList.isEmpty()) {
        for (MedicationAdministrationDetail medicationAdministrationDetail : medicationAdministrationDetailList) {
            MedicationAdministration medicationAdministration = new MedicationAdministration();
            String resourceId = String.valueOf(medicationAdministrationDetail.getId());
            String versionId = String.valueOf(medicationAdministrationDetail.getLastUpdated().getTime());
            String resourceType = medicationAdministration.getResourceType().toString();
            IdType id = new IdType(resourceType, resourceId, versionId);
            medicationAdministration.setId(id);
            medicationAdministration.getMeta().setVersionId(versionId);
            medicationAdministration.getMeta().setLastUpdated(medicationAdministrationDetail.getLastUpdated());
            medicationAdministration.addDefinition(new Reference("Patient/" + medicationAdministrationDetail.getPatientId()));
            medicationAdministration.addDefinition(new Reference("Practitioner/" + medicationAdministrationDetail.getPractitionerId()));
            medicationAdministration.setPrescription(new Reference("MedicationOrder/" + medicationAdministrationDetail.getPrescriptionId()));
            medicationAdministration.setEffective(new DateType(medicationAdministrationDetail.getAdministrationDate()));
            medicationAdministration.setMedication(new Reference("Medication/" + medicationAdministrationDetail.getMedicationId()));
            medicationAdministrations.add(medicationAdministration);
        }
    }
    return medicationAdministrations;
}

Example 35 with DateType

use of org.hl7.fhir.r5.model.DateType in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method StructuredRecordOperation.

@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
    Bundle structuredBundle = new Bundle();
    Boolean getAllergies = false;
    Boolean includeResolved = false;
    Boolean getMedications = false;
    Boolean includePrescriptionIssues = false;
    Period medicationPeriod = null;
    String NHS = getNhsNumber(params);
    PatientDetails patientDetails = patientSearch.findPatient(NHS);
    // see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
    if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
    }
    if (NHS.equals(patientNoconsent)) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
    }
    operationOutcome = null;
    for (ParametersParameterComponent param : params.getParameter()) {
        if (validateParametersName(param.getName())) {
            if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
                getAllergies = true;
                if (param.getPart().isEmpty()) {
                    // addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
                boolean includeResolvedParameterPartPresent = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            includeResolvedParameterPartPresent = true;
                        } else {
                            throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!includeResolvedParameterPartPresent) {
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
            }
            if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
                getMedications = true;
                boolean isIncludedPrescriptionIssuesExist = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            isIncludedPrescriptionIssuesExist = true;
                        }
                    } else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
                        DateType startDateDt = (DateType) paramPart.getValue();
                        medicationPeriod = new Period();
                        medicationPeriod.setStart(startDateDt.getValue());
                        medicationPeriod.setEnd(null);
                        String startDate = startDateDt.asStringValue();
                        if (!validateStartDateParamAndEndDateParam(startDate, null)) {
                        // addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!isIncludedPrescriptionIssuesExist) {
                    // # 1.2.6 now defaults to true if not provided
                    includePrescriptionIssues = true;
                }
            }
        } else {
            // invalid parameter
            addWarningIssue(param, IssueType.NOTSUPPORTED);
        }
    }
    // for parameter
    // Add Patient
    Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
    if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
        structuredBundle.addEntry().setResource(patient);
    }
    // Organization from patient
    Set<String> orgIds = new HashSet<>();
    orgIds.add(patientDetails.getManagingOrganization());
    // Practitioner from patient
    Set<String> practitionerIds = new HashSet<>();
    List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
    practitionerReferenceList.forEach(practitionerReference -> {
        String[] pracRef = practitionerReference.getReference().split("/");
        if (pracRef.length > 1) {
            practitionerIds.add(pracRef[1]);
        }
    });
    if (getAllergies) {
        structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
    }
    if (getMedications) {
        structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
    }
    // Add all practitioners and practitioner roles
    for (String practitionerId : practitionerIds) {
        Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
        structuredBundle.addEntry().setResource(pracResource);
        List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
        for (PractitionerRole role : practitionerRoleList) {
            String[] split = role.getOrganization().getReference().split("/");
            orgIds.add(split[1]);
            structuredBundle.addEntry().setResource(role);
        }
    }
    // Add all organizations
    for (String orgId : orgIds) {
        OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
        Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
        structuredBundle.addEntry().setResource(organization);
    }
    structuredBundle.setType(BundleType.COLLECTION);
    structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
    if (operationOutcome != null) {
        structuredBundle.addEntry().setResource(operationOutcome);
    } else {
        removeDuplicateResources(structuredBundle);
    }
    return structuredBundle;
}