Examples with Observation org.hl7.fhir.r5.model.Observation used on opensource projects

Example 56 with Observation

use of org.hl7.fhir.r5.model.Observation in project openmrs-module-fhir2 by openmrs.

the class ObservationSearchQueryTest method searchForObs_shouldSortObsAsRequested.

@Test
public void searchForObs_shouldSortObsAsRequested() {
    SortSpec sort = new SortSpec();
    sort.setParamName("date");
    sort.setOrder(SortOrderEnum.ASC);
    SearchParameterMap theParams = new SearchParameterMap();
    theParams.setSortSpec(sort);
    IBundleProvider results = search(theParams);
    List<IBaseResource> resultList = get(results);
    assertThat(results, notNullValue());
    assertThat(resultList, not(empty()));
    assertThat(resultList, hasSize(greaterThan(1)));
    for (int i = 1; i < resultList.size(); i++) {
        assertThat(((Observation) resultList.get(i - 1)).getEffectiveDateTimeType().getValue(), sameOrBefore(((Observation) resultList.get(i)).getEffectiveDateTimeType().getValue()));
    }
    sort.setOrder(SortOrderEnum.DESC);
    theParams.setSortSpec(sort);
    results = search(theParams);
    resultList = get(results);
    assertThat(results, notNullValue());
    assertThat(resultList, not(empty()));
    assertThat(resultList, hasSize(greaterThan(1)));
    for (int i = 1; i < resultList.size(); i++) {
        assertThat(((Observation) resultList.get(i - 1)).getEffectiveDateTimeType().getValue(), sameOrAfter(((Observation) resultList.get(i)).getEffectiveDateTimeType().getValue()));
    }
}

Example 57 with Observation

use of org.hl7.fhir.r5.model.Observation in project openmrs-module-fhir2 by openmrs.

the class ObservationSearchQueryTest method searchForObs_shouldAddNotNullGroupMembersToReturnedResultsR3.

@Test
public void searchForObs_shouldAddNotNullGroupMembersToReturnedResultsR3() {
    TokenAndListParam uuid = new TokenAndListParam().addAnd(new TokenParam(OBS_GROUP_UUID));
    HashSet<Include> includes = new HashSet<>();
    Include include = new Include("Observation:related-type");
    includes.add(include);
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.COMMON_SEARCH_HANDLER, FhirConstants.ID_PROPERTY, uuid).addParameter(FhirConstants.INCLUDE_SEARCH_HANDLER, includes);
    IBundleProvider results = search(theParams);
    assertThat(results.size(), equalTo(1));
    List<IBaseResource> resultList = get(results);
    assertThat(results, notNullValue());
    // included resource added as part of the result list
    assertThat(resultList.size(), equalTo(2));
    Observation returnedObservation = (Observation) resultList.iterator().next();
    assertThat(resultList, hasItem(allOf(is(instanceOf(Observation.class)), hasProperty("id", equalTo(returnedObservation.getHasMemberFirstRep().getReferenceElement().getIdPart())))));
}

Example 58 with Observation

use of org.hl7.fhir.r5.model.Observation in project openmrs-module-fhir2 by openmrs.

the class ObservationSearchQueryTest method searchForObs_shouldSearchForObsByValueDate.

@Test
public void searchForObs_shouldSearchForObsByValueDate() {
    SearchParameterMap theParams = new SearchParameterMap();
    theParams.addParameter(FhirConstants.DATE_RANGE_SEARCH_HANDLER, "valueDatetime", new DateRangeParam(new DateParam(VALUE_DATE)));
    IBundleProvider results = search(theParams);
    assertThat(results, notNullValue());
    assertThat(results.size(), equalTo(1));
    List<IBaseResource> resultList = get(results);
    assertThat(resultList, not(empty()));
    assertThat(resultList, hasItem(hasProperty("id", equalTo(OBS_VALUE_CONCEPT_UUID))));
    assertThat(((Observation) resultList.get(0)).getIssued().toString(), startsWith(VALUE_DATE));
}

Example 59 with Observation

use of org.hl7.fhir.r5.model.Observation in project openmrs-module-fhir2 by openmrs.

the class ObservationSearchQueryTest method searchForObs_shouldSearchByObsDateAndTime.

@Test
public void searchForObs_shouldSearchByObsDateAndTime() {
    SearchParameterMap theParams = new SearchParameterMap();
    theParams.addParameter(FhirConstants.DATE_RANGE_SEARCH_HANDLER, "obsDatetime", new DateRangeParam(new DateParam(OBS_DATE_AND_TIME)));
    IBundleProvider results = search(theParams);
    assertThat(results, notNullValue());
    assertThat(results.size(), equalTo(12));
    List<IBaseResource> resultList = get(results);
    assertThat(resultList, not(empty()));
    assertThat(resultList.size(), equalTo(10));
    assertThat(resultList, hasItem(hasProperty("id", equalTo(OBS_VALUE_CONCEPT_UUID))));
    assertThat(((Observation) resultList.get(0)).getEffectiveDateTimeType().getValue().toString(), equalTo(EXPECTED_OBS_DATE_AND_TIME));
}

Example 60 with Observation

use of org.hl7.fhir.r5.model.Observation in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportTranslatorImplTest method setup.

@Before
public void setup() {
    translator = new DiagnosticReportTranslatorImpl();
    translator.setObservationReferenceTranslator(observationReferenceTranslator);
    translator.setConceptTranslator(conceptTranslator);
    translator.setEncounterReferenceTranslator(encounterReferenceTranslator);
    translator.setPatientReferenceTranslator(patientReferenceTranslator);
    // OpenMRS setup
    fhirDiagnosticReport = new FhirDiagnosticReport();
    Obs childObs = new Obs();
    childObs.setUuid(CHILD_UUID);
    fhirDiagnosticReport.setUuid(PARENT_UUID);
    fhirDiagnosticReport.getResults().add(childObs);
    // FHIR setup
    Reference obsReference = new Reference().setType("Observation").setReference("Observation/" + CHILD_UUID);
    diagnosticReport = new DiagnosticReport();
    diagnosticReport.setId(PARENT_UUID);
    diagnosticReport.addResult(obsReference);
    // Mocks for DiagnosticReport.result
    when(observationReferenceTranslator.toFhirResource(childObs)).thenReturn(obsReference);
    when(observationReferenceTranslator.toOpenmrsType(obsReference)).thenReturn(childObs);
}