Examples with Observation org.hl7.fhir.r5.model.Observation used on opensource projects

Example 1 with Observation

use of org.hl7.fhir.r5.model.Observation in project beneficiary-fhir-data by CMSgov.

the class DMEClaimTransformerV2Test method shouldHaveLineHctHgbRsltNumSupInfo.

@Test
public void shouldHaveLineHctHgbRsltNumSupInfo() {
    SupportingInformationComponent sic = TransformerTestUtilsV2.findSupportingInfoByCode("https://bluebutton.cms.gov/resources/variables/line_hct_hgb_rslt_num", eob.getSupportingInfo());
    SupportingInformationComponent compare = TransformerTestUtilsV2.createSupportingInfo(// We don't care what the sequence number is here
    sic.getSequence(), // Category
    Arrays.asList(new Coding("http://terminology.hl7.org/CodeSystem/claiminformationcategory", "info", "Information"), new Coding("https://bluebutton.cms.gov/resources/codesystem/information", "https://bluebutton.cms.gov/resources/variables/line_hct_hgb_rslt_num", "Hematocrit / Hemoglobin Test Results")));
    compare.setValue(new Reference("#line-observation-1"));
    assertTrue(compare.equalsDeep(sic));
}

Example 2 with Observation

use of org.hl7.fhir.r5.model.Observation in project beneficiary-fhir-data by CMSgov.

the class CarrierClaimTransformerV2Test method shouldHaveSupportingInfoListForClaimReceivedDate2.

@Test
public void shouldHaveSupportingInfoListForClaimReceivedDate2() {
    SupportingInformationComponent sic = TransformerTestUtilsV2.findSupportingInfoByCode("info", eob.getSupportingInfo());
    SupportingInformationComponent compare = TransformerTestUtilsV2.createSupportingInfo(// We don't care what the sequence number is here
    sic.getSequence(), // Category
    Arrays.asList(new Coding("http://terminology.hl7.org/CodeSystem/claiminformationcategory", "info", "Information"), new Coding("https://bluebutton.cms.gov/resources/codesystem/information", "https://bluebutton.cms.gov/resources/variables/line_hct_hgb_rslt_num", "Hematocrit / Hemoglobin Test Results")));
    compare.setValue(new Reference("#line-observation-6"));
    assertTrue(compare.equalsDeep(sic));
}

Example 3 with Observation

use of org.hl7.fhir.r5.model.Observation in project beneficiary-fhir-data by CMSgov.

the class TransformerUtilsV2 method findOrCreateContainedObservation.

static Observation findOrCreateContainedObservation(ExplanationOfBenefit eob, String id) {
    Optional<Resource> observation = eob.getContained().stream().filter(r -> r.getId() == id).findFirst();
    // If it isn't there, add one
    if (!observation.isPresent()) {
        observation = Optional.of(new Observation().setId(id));
        eob.getContained().add(observation.get());
    }
    // At this point `observation.get()` will always return
    if (!Observation.class.isInstance(observation.get())) {
        throw new BadCodeMonkeyException();
    }
    return (Observation) observation.get();
}

Example 4 with Observation

use of org.hl7.fhir.r5.model.Observation in project kindling by HL7.

the class PageProcessor method generateToc.

private String generateToc() throws Exception {
    // return breadCrumbManager.makeToc();
    List<String> entries = new ArrayList<String>();
    entries.addAll(toc.keySet());
    Collections.sort(entries, new SectionSorter());
    Set<String> pages = new HashSet<String>();
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(folders.dstDir, false, true);
    TableModel model = gen.new TableModel("toc", true);
    model.getTitles().add(gen.new Title(null, model.getDocoRef(), "Table of Contents", "Table of Contents", null, 0));
    Deque<TocItem> stack = new ArrayDeque<TocItem>();
    for (String s : entries) {
        TocEntry t = toc.get(s);
        if (!t.isIg() && !s.startsWith("?")) {
            String nd = s;
            while (nd.endsWith(".0")) nd = nd.substring(0, nd.length() - 2);
            int d = Utilities.charCount(nd, '.');
            if (d < 4 && !pages.contains(t.getLink())) {
                String np = getNormativePackageForPage(t.getLink());
                pages.add(t.getLink());
                while (!stack.isEmpty() && stack.getFirst().depth >= d) stack.pop();
                Row row = gen.new Row();
                row.setIcon("icon_page.gif", null);
                String td = t.getText();
                if (!stack.isEmpty()) {
                    if (td.startsWith(stack.getFirst().entry.getText() + " - "))
                        td = td.substring(stack.getFirst().entry.getText().length() + 3);
                    else if (td.startsWith(stack.getFirst().entry.getText()))
                        td = td.substring(stack.getFirst().entry.getText().length());
                }
                Cell cell = gen.new Cell(null, t.getLink(), nd + " " + td, t.getText() + " ", null);
                row.getCells().add(cell);
                if (np != null) {
                    cell.addPiece(gen.new Piece(null, " ", null));
                    cell.addPiece(gen.new Piece("versions.html#std-process", "basic".equals(np) ? "(Normative)" : "(Normative / " + Utilities.capitalize(np) + ")", null).addStyle("color: #008000"));
                    if (np.equals("infrastructure"))
                        row.setIcon("icon_page_n_i.gif", null);
                    else if (np.equals("conformance"))
                        row.setIcon("icon_page_n_c.gif", null);
                    else if (np.equals("patient"))
                        row.setIcon("icon_page_n_p.gif", null);
                    else if (np.equals("observation"))
                        row.setIcon("icon_page_n_o.gif", null);
                    else
                        row.setIcon("icon_page_n.gif", null);
                } else {
                    cell.addPiece(gen.new Piece(null, " ", null));
                    cell.addPiece(gen.new Piece("versions.html#std-process", "(Trial Use)", null).addStyle("color: #b3b3b3"));
                }
                if (stack.isEmpty())
                    model.getRows().add(row);
                else
                    stack.getFirst().row.getSubRows().add(row);
                stack.push(new TocItem(t, row, d));
            }
        }
    }
    return new XhtmlComposer(XhtmlComposer.HTML).compose(gen.generate(model, "", 0, null));
}

Example 5 with Observation

use of org.hl7.fhir.r5.model.Observation in project kindling by HL7.

the class PageProcessor method profileDictionaryLink.

private String profileDictionaryLink(ConstraintStructure profile) {
    String uri = ToolingExtensions.readStringExtension(profile.getResource(), "http://hl7.org/fhir/StructureDefinition/datadictionary");
    if (Utilities.noString(uri))
        return "<!-- no uri -->";
    Dictionary dict = definitions.getDictionaries().get(uri);
    if (dict == null)
        return "<p>This profile specifies that the value of the " + profile.getResource().getSnapshot().getElement().get(0).getPath() + " resource must be a valid Observation as defined in the data dictionary (Unknown? - " + uri + ").</p>";
    else
        return "<p>This profile specifies that the value of the " + profile.getResource().getSnapshot().getElement().get(0).getPath() + " resource must be a valid Observation as defined in the data dictionary <a href=\"" + uri + ".html\">" + dict.getName() + "</a>.</p>";
}