Examples with Property org.hl7.fhir.r5.model.Property used on opensource projects

Example 61 with Property

use of org.hl7.fhir.r5.model.Property in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method funcResolve.

private List<Base> funcResolve(ExecutionContext context, List<Base> focus, ExpressionNode exp) throws FHIRException {
    List<Base> result = new ArrayList<Base>();
    Base refContext = null;
    for (Base item : focus) {
        String s = convertToString(item);
        if (item.fhirType().equals("Reference")) {
            refContext = item;
            Property p = item.getChildByName("reference");
            if (p != null && p.hasValues()) {
                s = convertToString(p.getValues().get(0));
            } else {
                // a reference without any valid actual reference (just identifier or display, but we can't resolve it)
                s = null;
            }
        }
        if (item.fhirType().equals("canonical")) {
            s = item.primitiveValue();
            refContext = item;
        }
        if (s != null) {
            Base res = null;
            if (s.startsWith("#")) {
                Property p = context.rootResource.getChildByName("contained");
                if (p != null) {
                    for (Base c : p.getValues()) {
                        if (chompHash(s).equals(chompHash(c.getIdBase()))) {
                            res = c;
                            break;
                        }
                    }
                }
            } else if (hostServices != null) {
                res = hostServices.resolveReference(context.appInfo, s, refContext);
            }
            if (res != null) {
                result.add(res);
            }
        }
    }
    return result;
}

Example 62 with Property

use of org.hl7.fhir.r5.model.Property in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method includeCodes.

private void includeCodes(ConceptSetComponent inc, List<ValueSetExpansionParameterComponent> params, ExpansionProfile profile) throws ETooCostly, FileNotFoundException, IOException, FHIRException {
    List<ValueSet> imports = new ArrayList<ValueSet>();
    for (UriType imp : inc.getValueSet()) imports.add(importValueSet(imp.getValue(), params, profile));
    if (!inc.hasSystem()) {
        if (// though this is not supposed to be the case
        imports.isEmpty())
            return;
        ValueSet base = imports.get(0);
        imports.remove(0);
        copyImportContains(base.getExpansion().getContains(), null, profile, imports);
    } else {
        CodeSystem cs = context.fetchCodeSystem(inc.getSystem());
        if ((cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE) && context.supportsSystem(inc.getSystem())) {
            addCodes(context.expandVS(inc, canBeHeirarchy), params, profile, imports);
            return;
        }
        if (cs == null) {
            if (context.isNoTerminologyServer())
                throw new NoTerminologyServiceException("unable to find code system " + inc.getSystem().toString());
            else
                throw new TerminologyServiceException("unable to find code system " + inc.getSystem().toString());
        }
        if (cs.getContent() != CodeSystemContentMode.COMPLETE)
            throw new TerminologyServiceException("Code system " + inc.getSystem().toString() + " is incomplete");
        if (cs.hasVersion())
            if (!existsInParams(params, "version", new UriType(cs.getUrl() + "|" + cs.getVersion())))
                params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(cs.getUrl() + "|" + cs.getVersion())));
        if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
            // special case - add all the code system
            for (ConceptDefinitionComponent def : cs.getConcept()) {
                addCodeAndDescendents(cs, inc.getSystem(), def, null, profile, imports);
            }
        }
        if (!inc.getConcept().isEmpty()) {
            canBeHeirarchy = false;
            for (ConceptReferenceComponent c : inc.getConcept()) {
                addCode(inc.getSystem(), c.getCode(), Utilities.noString(c.getDisplay()) ? getCodeDisplay(cs, c.getCode()) : c.getDisplay(), null, convertDesignations(c.getDesignation()), profile, false, CodeSystemUtilities.isInactive(cs, c.getCode()), imports);
            }
        }
        if (inc.getFilter().size() > 1) {
            // which will bt the case if we get around to supporting this
            canBeHeirarchy = false;
            // need to and them, and this isn't done yet. But this shouldn't arise in non loinc and snomed value sets
            throw new TerminologyServiceException("Multiple filters not handled yet");
        }
        if (inc.getFilter().size() == 1) {
            ConceptSetFilterComponent fc = inc.getFilter().get(0);
            if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.ISA) {
                // special: all codes in the target code system under the value
                ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
                if (def == null)
                    throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
                addCodeAndDescendents(cs, inc.getSystem(), def, null, profile, imports);
            } else if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.DESCENDENTOF) {
                // special: all codes in the target code system under the value
                ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
                if (def == null)
                    throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
                for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, inc.getSystem(), c, null, profile, imports);
            } else if ("display".equals(fc.getProperty()) && fc.getOp() == FilterOperator.EQUAL) {
                // gg; note: wtf is this: if the filter is display=v, look up the code 'v', and see if it's diplsay is 'v'?
                canBeHeirarchy = false;
                ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
                if (def != null) {
                    if (isNotBlank(def.getDisplay()) && isNotBlank(fc.getValue())) {
                        if (def.getDisplay().contains(fc.getValue())) {
                            addCode(inc.getSystem(), def.getCode(), def.getDisplay(), null, def.getDesignation(), profile, CodeSystemUtilities.isNotSelectable(cs, def), CodeSystemUtilities.isInactive(cs, def), imports);
                        }
                    }
                }
            } else
                throw new NotImplementedException("Search by property[" + fc.getProperty() + "] and op[" + fc.getOp() + "] is not supported yet");
        }
    }
}

Example 63 with Property

use of org.hl7.fhir.r5.model.Property in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeTerminologyCapabilitiesTerminologyCapabilitiesCodeSystemVersionComponent.

protected void composeTerminologyCapabilitiesTerminologyCapabilitiesCodeSystemVersionComponent(Complex parent, String parentType, String name, TerminologyCapabilities.TerminologyCapabilitiesCodeSystemVersionComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "version", name, element, index);
    if (element.hasCodeElement())
        composeString(t, "TerminologyCapabilities", "code", element.getCodeElement(), -1);
    if (element.hasIsDefaultElement())
        composeBoolean(t, "TerminologyCapabilities", "isDefault", element.getIsDefaultElement(), -1);
    if (element.hasCompositionalElement())
        composeBoolean(t, "TerminologyCapabilities", "compositional", element.getCompositionalElement(), -1);
    for (int i = 0; i < element.getLanguage().size(); i++) composeCode(t, "TerminologyCapabilities", "language", element.getLanguage().get(i), i);
    for (int i = 0; i < element.getFilter().size(); i++) composeTerminologyCapabilitiesTerminologyCapabilitiesCodeSystemVersionFilterComponent(t, "TerminologyCapabilities", "filter", element.getFilter().get(i), i);
    for (int i = 0; i < element.getProperty().size(); i++) composeCode(t, "TerminologyCapabilities", "property", element.getProperty().get(i), i);
}

Example 64 with Property

use of org.hl7.fhir.r5.model.Property in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeValueSetConceptSetFilterComponent.

protected void composeValueSetConceptSetFilterComponent(Complex parent, String parentType, String name, ValueSet.ConceptSetFilterComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "filter", name, element, index);
    if (element.hasPropertyElement())
        composeCode(t, "ValueSet", "property", element.getPropertyElement(), -1);
    if (element.hasOpElement())
        composeEnum(t, "ValueSet", "op", element.getOpElement(), -1);
    if (element.hasValueElement())
        composeString(t, "ValueSet", "value", element.getValueElement(), -1);
}

Example 65 with Property

use of org.hl7.fhir.r5.model.Property in project org.hl7.fhir.core by hapifhir.

the class VerticalBarParser method parse.

@Override
public Element parse(InputStream stream) throws IOException, FHIRFormatError, DefinitionException, FHIRException {
    StructureDefinition sd = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/v2/StructureDefinition/Message");
    Element message = new Element("Message", new Property(context, sd.getSnapshot().getElementFirstRep(), sd));
    VerticalBarParserReader reader = new VerticalBarParserReader(new BufferedInputStream(stream), charset);
    preDecode(reader);
    while (// && (getOptions().getSegmentLimit() == 0 || getOptions().getSegmentLimit() > message.getSegments().size()))
    !reader.isFinished()) readSegment(message, reader);
    return message;
}