Examples with Questionnaire org.hl7.fhir.r5.model.Questionnaire used on opensource projects

Example 86 with Questionnaire

use of org.hl7.fhir.r5.model.Questionnaire in project org.hl7.fhir.core by hapifhir.

the class MeasureValidator method validateScore.

private void validateScore(ValidatorHostContext hostContext, MeasureContext m, List<ValidationMessage> errors, Element mrg, NodeStack stack, boolean inProgress) {
    Element ms = mrg.getNamedChild("measureScore");
    // first, we check MeasureReport.type
    if ("data-collection".equals(m.reportType())) {
        banned(errors, stack, ms, I18nConstants.MEASURE_MR_SCORE_PROHIBITED_RT);
    } else if ("cohort".equals(m.scoring())) {
        // cohort - there is no measure score
        banned(errors, stack, ms, I18nConstants.MEASURE_MR_SCORE_PROHIBITED_MS);
    } else if (Utilities.existsInList(m.scoring(), "proportion", "ratio", "continuous-variable")) {
        if (rule(errors, IssueType.REQUIRED, mrg.line(), mrg.col(), stack.getLiteralPath(), ms != null, I18nConstants.MEASURE_MR_SCORE_REQUIRED, m.scoring())) {
            NodeStack ns = stack.push(ms, -1, ms.getProperty().getDefinition(), ms.getProperty().getDefinition());
            Element v = ms.getNamedChild("value");
            // TODO: this is a DEQM special and should be handled differently
            if (v == null) {
                if (ms.hasExtension("http://hl7.org/fhir/us/davinci-deqm/StructureDefinition/extension-alternateScoreType")) {
                    v = ms.getExtension("http://hl7.org/fhir/us/davinci-deqm/StructureDefinition/extension-alternateScoreType").getNamedChild("value");
                }
            }
            if ("proportion".equals(m.scoring())) {
                // proportion - score is a unitless number from 0 ... 1
                banned(errors, ns, ms, "unit", I18nConstants.MEASURE_MR_SCORE_UNIT_PROHIBITED, "proportion");
                banned(errors, ns, ms, "system", I18nConstants.MEASURE_MR_SCORE_UNIT_PROHIBITED, "proportion");
                banned(errors, ns, ms, "code", I18nConstants.MEASURE_MR_SCORE_UNIT_PROHIBITED, "proportion");
                if (rule(errors, IssueType.REQUIRED, ms.line(), ms.col(), ns.getLiteralPath(), v != null, I18nConstants.MEASURE_MR_SCORE_VALUE_REQUIRED, "proportion")) {
                    try {
                        BigDecimal dec = new BigDecimal(v.primitiveValue());
                        NodeStack nsv = ns.push(v, -1, v.getProperty().getDefinition(), v.getProperty().getDefinition());
                        rule(errors, IssueType.REQUIRED, v.line(), v.col(), nsv.getLiteralPath(), dec.compareTo(new BigDecimal(0)) >= 0 && dec.compareTo(new BigDecimal(1)) <= 0, I18nConstants.MEASURE_MR_SCORE_VALUE_INVALID_01);
                    } catch (Exception e) {
                    // nothing - will have caused an error elsewhere
                    }
                }
            } else if ("ratio".equals(m.scoring())) {
                // ratio -  score is a number with no value constraints, and maybe with a unit (perhaps constrained by extension)
                if (rule(errors, IssueType.REQUIRED, ms.line(), ms.col(), ns.getLiteralPath(), v != null, I18nConstants.MEASURE_MR_SCORE_VALUE_REQUIRED, "ratio")) {
                    Element unit = ms.getNamedChild("code");
                    Coding c = m.measure().hasExtension("http://hl7.org/fhir/StructureDefinition/questionnaire-unit") ? (Coding) m.measure().getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/questionnaire-unit").getValue() : null;
                    if (unit != null) {
                        if (c != null) {
                            NodeStack nsc = ns.push(unit, -1, unit.getProperty().getDefinition(), unit.getProperty().getDefinition());
                            rule(errors, IssueType.CODEINVALID, unit.line(), unit.col(), nsc.getLiteralPath(), c.getCode().equals(unit.primitiveValue()), I18nConstants.MEASURE_MR_SCORE_FIXED, c.getCode());
                            Element system = ms.getNamedChild("system");
                            if (system == null) {
                                NodeStack nss = system == null ? ns : ns.push(system, -1, system.getProperty().getDefinition(), system.getProperty().getDefinition());
                                rule(errors, IssueType.CODEINVALID, system.line(), system.col(), nss.getLiteralPath(), c.getSystem().equals(system.primitiveValue()), I18nConstants.MEASURE_MR_SCORE_FIXED, c.getSystem());
                            } else {
                                rule(errors, IssueType.CODEINVALID, ms.line(), ms.col(), ns.getLiteralPath(), c.getSystem().equals(system.primitiveValue()), I18nConstants.MEASURE_MR_SCORE_FIXED, c.getSystem());
                            }
                        }
                    } else if (c != null) {
                        rule(errors, IssueType.NOTFOUND, ms.line(), ms.col(), ns.getLiteralPath(), false, I18nConstants.MEASURE_MR_SCORE_FIXED, DataRenderer.display(context, c));
                    } else {
                        warning(errors, IssueType.NOTFOUND, ms.line(), ms.col(), ns.getLiteralPath(), false, I18nConstants.MEASURE_MR_SCORE_UNIT_REQUIRED, "ratio");
                    }
                }
            } else if ("continuous-variable".equals(m.scoring())) {
                // continuous-variable - score is a quantity with a unit per the extension
                if (rule(errors, IssueType.REQUIRED, ms.line(), ms.col(), ns.getLiteralPath(), v != null, I18nConstants.MEASURE_MR_SCORE_VALUE_REQUIRED, "continuous-variable")) {
                    Element unit = ms.getNamedChild("code");
                    Coding c = m.measure().hasExtension("http://hl7.org/fhir/StructureDefinition/questionnaire-unit") ? (Coding) m.measure().getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/questionnaire-unit").getValue() : null;
                    if (unit != null) {
                        if (c != null) {
                            NodeStack nsc = ns.push(unit, -1, unit.getProperty().getDefinition(), unit.getProperty().getDefinition());
                            rule(errors, IssueType.CODEINVALID, unit.line(), unit.col(), nsc.getLiteralPath(), c.getCode().equals(unit.primitiveValue()), I18nConstants.MEASURE_MR_SCORE_FIXED, c.getCode());
                            Element system = ms.getNamedChild("system");
                            if (system == null) {
                                NodeStack nss = system == null ? ns : ns.push(system, -1, system.getProperty().getDefinition(), system.getProperty().getDefinition());
                                rule(errors, IssueType.CODEINVALID, system.line(), system.col(), nss.getLiteralPath(), c.getSystem().equals(system.primitiveValue()), I18nConstants.MEASURE_MR_SCORE_FIXED, c.getSystem());
                            } else {
                                rule(errors, IssueType.CODEINVALID, ms.line(), ms.col(), ns.getLiteralPath(), c.getSystem().equals(system.primitiveValue()), I18nConstants.MEASURE_MR_SCORE_FIXED, c.getSystem());
                            }
                        }
                    } else if (c != null) {
                        rule(errors, IssueType.NOTFOUND, ms.line(), ms.col(), ns.getLiteralPath(), false, I18nConstants.MEASURE_MR_SCORE_FIXED, DataRenderer.display(context, c));
                    }
                }
            }
        }
    // else do nothing - there's a hint elsewhere
    }
}

Example 87 with Questionnaire

use of org.hl7.fhir.r5.model.Questionnaire in project org.hl7.fhir.core by hapifhir.

the class Tester method main.

public static void main(String[] args) throws Exception {
    IWorkerContext context = SimpleWorkerContext.fromPack(Utilities.path("C:\\work\\org.hl7.fhir\\build\\publish", "validation-min.xml.zip"));
    int t = 0;
    int ok = 0;
    for (String f : new File("C:\\work\\org.hl7.fhir\\build\\publish").list()) {
        if (f.endsWith(".xml") && !f.endsWith(".canonical.xml") && !f.contains("profile") && !f.contains("questionnaire") && new File("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".ttl")).exists()) {
            // if (f.equals("account-questionnaire.xml")) {
            System.out.print("convert " + f);
            // Manager.convert(context, new FileInputStream("C:\\work\\org.hl7.fhir\\build\\publish\\"+f), FhirFormat.XML,
            // new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".mm.json")), FhirFormat.JSON, OutputStyle.PRETTY);
            // String src = normalise(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".mm.json")));
            // String tgt = normalise(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".json")));
            Element e = Manager.parse(context, new FileInputStream("C:\\work\\org.hl7.fhir\\build\\publish\\" + f), FhirFormat.XML);
            Manager.compose(context, e, new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".mm.ttl")), FhirFormat.TURTLE, OutputStyle.PRETTY, null);
            Manager.compose(context, e, new FileOutputStream(Utilities.path("[tmp]", "resource.xml")), FhirFormat.XML, OutputStyle.PRETTY, null);
            String src = TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".mm.ttl"));
            String tgt = TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".ttl"));
            t++;
            if (src.equals(tgt)) {
                System.out.println(".. ok");
                ok++;
            } else
                System.out.println(".. fail");
        }
    // }
    }
    System.out.println("done - " + Integer.toString(t) + " files, " + Integer.toString(ok) + " ok");
}

Example 88 with Questionnaire

use of org.hl7.fhir.r5.model.Questionnaire in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeQuestionnaireQuestionnaireItemInitialComponent.

protected void composeQuestionnaireQuestionnaireItemInitialComponent(Complex parent, String parentType, String name, Questionnaire.QuestionnaireItemInitialComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "initial", name, element, index);
    if (element.hasValue())
        composeType(t, "Questionnaire", "value", element.getValue(), -1);
}

Example 89 with Questionnaire

use of org.hl7.fhir.r5.model.Questionnaire in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeQuestionnaireResponse.

protected void composeQuestionnaireResponse(Complex parent, String parentType, String name, QuestionnaireResponse element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "QuestionnaireResponse", name, element, index);
    if (element.hasIdentifier())
        composeIdentifier(t, "QuestionnaireResponse", "identifier", element.getIdentifier(), -1);
    for (int i = 0; i < element.getBasedOn().size(); i++) composeReference(t, "QuestionnaireResponse", "basedOn", element.getBasedOn().get(i), i);
    for (int i = 0; i < element.getPartOf().size(); i++) composeReference(t, "QuestionnaireResponse", "partOf", element.getPartOf().get(i), i);
    if (element.hasQuestionnaireElement())
        composeCanonical(t, "QuestionnaireResponse", "questionnaire", element.getQuestionnaireElement(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "QuestionnaireResponse", "status", element.getStatusElement(), -1);
    if (element.hasSubject())
        composeReference(t, "QuestionnaireResponse", "subject", element.getSubject(), -1);
    if (element.hasEncounter())
        composeReference(t, "QuestionnaireResponse", "encounter", element.getEncounter(), -1);
    if (element.hasAuthoredElement())
        composeDateTime(t, "QuestionnaireResponse", "authored", element.getAuthoredElement(), -1);
    if (element.hasAuthor())
        composeReference(t, "QuestionnaireResponse", "author", element.getAuthor(), -1);
    if (element.hasSource())
        composeReference(t, "QuestionnaireResponse", "source", element.getSource(), -1);
    for (int i = 0; i < element.getItem().size(); i++) composeQuestionnaireResponseQuestionnaireResponseItemComponent(t, "QuestionnaireResponse", "item", element.getItem().get(i), i);
}

Example 90 with Questionnaire

use of org.hl7.fhir.r5.model.Questionnaire in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeQuestionnaire.

protected void composeQuestionnaire(Complex parent, String parentType, String name, Questionnaire element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Questionnaire", name, element, index);
    if (element.hasUrlElement())
        composeUri(t, "Questionnaire", "url", element.getUrlElement(), -1);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Questionnaire", "identifier", element.getIdentifier().get(i), i);
    if (element.hasVersionElement())
        composeString(t, "Questionnaire", "version", element.getVersionElement(), -1);
    if (element.hasNameElement())
        composeString(t, "Questionnaire", "name", element.getNameElement(), -1);
    if (element.hasTitleElement())
        composeString(t, "Questionnaire", "title", element.getTitleElement(), -1);
    for (int i = 0; i < element.getDerivedFrom().size(); i++) composeCanonical(t, "Questionnaire", "derivedFrom", element.getDerivedFrom().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "Questionnaire", "status", element.getStatusElement(), -1);
    if (element.hasExperimentalElement())
        composeBoolean(t, "Questionnaire", "experimental", element.getExperimentalElement(), -1);
    for (int i = 0; i < element.getSubjectType().size(); i++) composeCode(t, "Questionnaire", "subjectType", element.getSubjectType().get(i), i);
    if (element.hasDateElement())
        composeDateTime(t, "Questionnaire", "date", element.getDateElement(), -1);
    if (element.hasPublisherElement())
        composeString(t, "Questionnaire", "publisher", element.getPublisherElement(), -1);
    for (int i = 0; i < element.getContact().size(); i++) composeContactDetail(t, "Questionnaire", "contact", element.getContact().get(i), i);
    if (element.hasDescriptionElement())
        composeMarkdown(t, "Questionnaire", "description", element.getDescriptionElement(), -1);
    for (int i = 0; i < element.getUseContext().size(); i++) composeUsageContext(t, "Questionnaire", "useContext", element.getUseContext().get(i), i);
    for (int i = 0; i < element.getJurisdiction().size(); i++) composeCodeableConcept(t, "Questionnaire", "jurisdiction", element.getJurisdiction().get(i), i);
    if (element.hasPurposeElement())
        composeMarkdown(t, "Questionnaire", "purpose", element.getPurposeElement(), -1);
    if (element.hasCopyrightElement())
        composeMarkdown(t, "Questionnaire", "copyright", element.getCopyrightElement(), -1);
    if (element.hasApprovalDateElement())
        composeDate(t, "Questionnaire", "approvalDate", element.getApprovalDateElement(), -1);
    if (element.hasLastReviewDateElement())
        composeDate(t, "Questionnaire", "lastReviewDate", element.getLastReviewDateElement(), -1);
    if (element.hasEffectivePeriod())
        composePeriod(t, "Questionnaire", "effectivePeriod", element.getEffectivePeriod(), -1);
    for (int i = 0; i < element.getCode().size(); i++) composeCoding(t, "Questionnaire", "code", element.getCode().get(i), i);
    for (int i = 0; i < element.getItem().size(); i++) composeQuestionnaireQuestionnaireItemComponent(t, "Questionnaire", "item", element.getItem().get(i), i);
}