Examples with Resource org.hl7.fhir.r5.model.Resource used on opensource projects

Example 81 with Resource

use of org.hl7.fhir.r5.model.Resource in project kindling by HL7.

the class PageProcessor method processResourceIncludes.

String processResourceIncludes(String name, ResourceDefn resource, String xml, String json, String ttl, String tx, String dict, String src, String mappings, String mappingsList, String type, String pagePath, ImplementationGuideDefn ig, Map<String, String> otherValues, WorkGroup wg, Map<String, String> examples) throws Exception {
    String workingTitle = Utilities.escapeXml(resource.getName());
    List<String> tabs = new ArrayList<String>();
    int level = (ig == null || ig.isCore()) ? 0 : 1;
    while (src.contains("<%") || src.contains("[%")) {
        int i1 = src.indexOf("<%");
        int i2 = src.indexOf("%>");
        if (i1 == -1) {
            i1 = src.indexOf("[%");
            i2 = src.indexOf("%]");
        }
        String s1 = src.substring(0, i1);
        String s2 = src.substring(i1 + 2, i2).trim();
        String s3 = src.substring(i2 + 2);
        String[] com = s2.split(" ");
        String searchAdditions = "";
        if (com[0].equals("resheader"))
            src = s1 + resHeader(name, resource.getName(), com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("aresheader"))
            src = s1 + abstractResHeader(name, resource.getName(), com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("lmheader"))
            src = s1 + lmHeader(name, resource.getName(), com.length > 1 ? com[1] : null, false) + s3;
        else if (com[0].equals("file")) {
            if (new File(folders.templateDir + com[1] + ".html").exists()) {
                src = s1 + TextFile.fileToString(folders.templateDir + com[1] + ".html") + s3;
            } else {
                src = s1 + TextFile.fileToString(folders.srcDir + com[1] + ".html") + s3;
            }
        } else if (com[0].equals("settitle")) {
            workingTitle = s2.substring(9).replace("{", "<%").replace("}", "%>");
            src = s1 + s3;
        } else if (com[0].equals("complinks"))
            src = s1 + getCompLinks(resource, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("othertabs"))
            src = s1 + genOtherTabs(com[1], tabs) + s3;
        else if (com[0].equals("svg"))
            src = s1 + new SvgGenerator(this, genlevel(level), resource.getLayout(), true, false, version).generate(resource, com[1]) + s3;
        else if (com[0].equals("normative")) {
            String np = null;
            if (com[2].equals("%check") || com[2].equals("%check-op")) {
                StandardsStatus st = resource.getStatus();
                boolean mixed = false;
                if (com[2].equals("%check-op") && st == StandardsStatus.NORMATIVE) {
                    for (Operation op : resource.getOperations()) {
                        if (op.getStandardsStatus() != null)
                            mixed = true;
                    }
                }
                if (st != null && (resource.getNormativePackage() != null || resource.getNormativeVersion() != null)) {
                    if (mixed)
                        np = getMixedNormativeNote(genlevel(level), resource.getNormativePackage(), com[1], workingTitle, name + ".html") + s3;
                    else
                        np = getNormativeNote(genlevel(level), resource.getNormativePackage(), com[1], workingTitle, name + ".html") + s3;
                }
            } else
                np = getNormativeNote(genlevel(level), resource.getNormativePackage(), com[1], workingTitle, name + ".html");
            if (np == null)
                src = s1 + s3;
            else
                src = s1 + np + s3;
        } else if (com.length != 1)
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing resource " + name);
        else if (com[0].equals("pageheader"))
            src = s1 + pageHeader(resource.getName()) + s3;
        else if (com[0].equals("maponthispage"))
            src = s1 + mapOnThisPage(mappingsList) + s3;
        else if (com[0].equals("newheader"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader.html") + s3;
        else if (com[0].equals("newheader1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader1.html") + s3;
        else if (com[0].equals("footer"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer.html") + s3;
        else if (com[0].equals("newfooter"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newfooter.html") + s3;
        else if (com[0].equals("footer1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer1.html") + s3;
        else if (com[0].equals("footer2"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer2.html") + s3;
        else if (com[0].equals("footer3"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer3.html") + s3;
        else if (com[0].equals("title"))
            src = s1 + workingTitle + s3;
        else if (com[0].equals("xtitle"))
            src = s1 + Utilities.escapeXml(resource.getName()) + s3;
        else if (com[0].equals("status"))
            src = s1 + resource.getStatus() + s3;
        else if (com[0].equals("draft-note"))
            src = s1 + getDraftNote(resource) + s3;
        else if (com[0].equals("introduction"))
            src = s1 + loadXmlNotes(name, "introduction", true, resource.getRoot().getDefinition(), resource, tabs, null, wg) + s3;
        else if (com[0].equals("notes"))
            src = s1 + loadXmlNotes(name, "notes", false, null, resource, tabs, null, wg) + s3;
        else if (com[0].equals("examples"))
            src = s1 + produceExamples(resource) + s3;
        else if (com[0].equals("profilelist"))
            src = s1 + produceProfiles(resource) + s3;
        else if (com[0].equals("extensionlist"))
            src = s1 + produceExtensions(resource) + s3;
        else if (com[0].equals("extensionreflist"))
            src = s1 + produceRefExtensions(resource) + s3;
        else if (com[0].equals("searchextensionlist"))
            src = s1 + produceSearchExtensions(resource) + s3;
        else if (com[0].equals("wg"))
            src = s1 + (resource.getWg() == null ? "null" : resource.getWg().getUrl()) + s3;
        else if (com[0].equals("wgt"))
            src = s1 + (resource.getWg() == null ? "null" : resource.getWg().getName()) + s3;
        else if (com[0].equals("fmm"))
            if (resource.getNormativeVersion() != null)
                src = s1 + "<a href=\"versions.html#maturity\">Maturity Level</a>: <a href=\"versions.html#std-process\">N</a>" + s3;
            else
                src = s1 + "<a href=\"versions.html#maturity\">Maturity Level</a>: " + resource.getFmmLevel() + "" + s3;
        else if (com[0].equals("sec-cat"))
            src = s1 + (resource.getSecurityCategorization() == null ? "" : "<a href=\"security.html#SecPrivConsiderations\">Security Category</a>: " + resource.getSecurityCategorization().toDisplay()) + s3;
        else if (com[0].equals("sstatus"))
            src = s1 + getStandardsStatus(resource.getName()) + s3;
        else if (com[0].equals("example-list"))
            src = s1 + produceExampleList(resource) + s3;
        else if (com[0].equals("name"))
            src = s1 + name + s3;
        else if (com[0].equals("cname"))
            src = s1 + resource.getName() + s3;
        else if (com[0].equals("search-additions")) {
            searchAdditions = s2.substring(16).trim();
            src = s1 + s3;
        } else if (com[0].equals("search"))
            src = s1 + getSearch(resource, searchAdditions) + s3;
        else if (com[0].equals("asearch"))
            src = s1 + getAbstractSearch(resource, searchAdditions) + s3;
        else if (com[0].equals("version"))
            src = s1 + ini.getStringProperty("FHIR", "version") + s3;
        else if (com[0].equals("gendate"))
            src = s1 + Config.DATE_FORMAT().format(new Date()) + s3;
        else if (com[0].equals("definition"))
            src = s1 + processMarkdown("resource.definition", resource.getRoot().getDefinition(), "", true) + s3;
        else if (com[0].equals("xml"))
            src = s1 + xml + s3;
        else if (com[0].equals("json"))
            src = s1 + json + s3;
        else if (com[0].equals("ttl"))
            src = s1 + ttl + s3;
        else if (com[0].equals("tx"))
            src = s1 + tx + s3;
        else if (com[0].equals("inv"))
            src = s1 + genResourceConstraints(resource, genlevel(level)) + s3;
        else if (com[0].equals("resource-table"))
            src = s1 + genResourceTable(resource, genlevel(level)) + s3;
        else if (com[0].equals("plural"))
            src = s1 + Utilities.pluralizeMe(name) + s3;
        else if (com[0].equals("dictionary"))
            src = s1 + dict + s3;
        else if (com[0].equals("mappings"))
            src = s1 + mappings + s3;
        else if (com[0].equals("mappingslist"))
            src = s1 + mappingsList + s3;
        else if (com[0].equals("breadcrumb"))
            src = s1 + breadCrumbManager.make(name) + s3;
        else if (com[0].equals("ext-link"))
            src = s1 + getExtensionsLink(resource) + s3;
        else if (com[0].equals("navlist"))
            src = s1 + breadCrumbManager.navlist(name, genlevel(level)) + s3;
        else if (com[0].equals("breadcrumblist"))
            src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(name, type, genlevel(level), workingTitle) : ig.makeList(name, type, genlevel(level), workingTitle)) + s3;
        else if (com[0].equals("year"))
            src = s1 + new SimpleDateFormat("yyyy").format(new Date()) + s3;
        else if (com[0].equals("buildId"))
            src = s1 + buildId + s3;
        else if (com[0].equals("level"))
            src = s1 + genlevel(level) + s3;
        else if (com[0].equals("atitle"))
            src = s1 + abstractResourceTitle(resource) + s3;
        else if (com[0].equals("pub-type"))
            src = s1 + publicationType + s3;
        else if (com[0].equals("example-header"))
            src = s1 + loadXmlNotesFromFile(Utilities.path(folders.srcDir, name.toLowerCase(), name + "-examples-header.xml"), false, null, resource, tabs, null, wg) + s3;
        else if (com[0].equals("pub-notice"))
            src = s1 + publicationNotice + s3;
        else if (com[0].equals("resref"))
            src = s1 + getReferences(resource.getName()) + s3;
        else if (com[0].equals("pagepath"))
            src = s1 + pagePath + s3;
        else if (com[0].equals("rellink")) {
            if (!pagePath.contains(".html"))
                throw new Error("Invalid link: " + pagePath + " at " + workingTitle);
            src = s1 + Utilities.URLEncode(pagePath) + s3;
        } else if (com[0].equals("baseURL"))
            src = s1 + Utilities.URLEncode(baseURL) + s3;
        else if (com[0].equals("baseURLn"))
            src = s1 + Utilities.appendForwardSlash(baseURL) + s3;
        else if (com[0].equals("operations")) {
            List<Operation> oplist = resource.getOperations();
            String n = resource.getName();
            String id = resource.getName().toLowerCase();
            boolean mixed = false;
            if (resource.getStatus() == StandardsStatus.NORMATIVE) {
                for (Operation op : resource.getOperations()) {
                    if (op.getStandardsStatus() != null)
                        mixed = true;
                }
            }
            src = s1 + genOperations(oplist, n, id, mixed, resource.getStatus(), "", resource.getNormativePackage()) + s3;
        } else if (com[0].equals("operations-summary"))
            src = s1 + genOperationsSummary(resource.getOperations(), resource) + s3;
        else if (com[0].equals("opcount"))
            src = s1 + genOpCount(resource.getOperations()) + s3;
        else if (com[0].startsWith("!"))
            src = s1 + s3;
        else if (com[0].equals("search-footer"))
            src = s1 + searchFooter(level) + s3;
        else if (com[0].equals("pattern-title"))
            src = s1 + resource.getName() + s3;
        else if (com[0].equals("search-header"))
            src = s1 + searchHeader(level) + s3;
        else if (com[0].equals("diff-analysis"))
            src = s1 + diffEngine.getDiffAsHtml(this, resource.getProfile()) + s3;
        else if (com[0].equals("r3r4transforms"))
            src = s1 + getR3r4transformNote(resource.getName()) + s3;
        else if (com[0].equals("fmm-style"))
            src = s1 + fmmBarColorStyle(resource) + s3;
        else if (otherValues.containsKey(com[0]))
            src = s1 + otherValues.get(com[0]) + s3;
        else if (com[0].equals("lmimplementations"))
            src = s1 + genImplementationList(resource) + s3;
        else if (com[0].equals("json-schema"))
            src = s1 + jsonSchema(resource.getName()) + s3;
        else if (com[0].equals("dependency-graph"))
            src = s1 + genDependencyGraph(resource, genlevel(level)) + s3;
        else if (com[0].equals("logical-mappings"))
            src = s1 + genLogicalMappings(resource, genlevel(level)) + s3;
        else if (com[0].equals("no-extensions-base-warning"))
            src = s1 + genNoExtensionsWarning(resource) + s3;
        else if (com[0].equals("res-ext-link"))
            src = s1 + genResExtLink(resource) + s3;
        else if (com[0].equals("pattern-analysis"))
            src = s1 + genLogicalAnalysis(resource, genlevel(level)) + s3;
        else if (com[0].equals("resurl")) {
            if (isAggregationEndpoint(resource.getName()))
                src = s1 + s3;
            else
                src = s1 + "<p>The resource name as it appears in a  RESTful URL is <a href=\"http.html#root\">[root]</a>/" + name + "/</p>" + s3;
        } else if (com[0].equals("res-type-count")) {
            src = s1 + definitions.getResources().size() + s3;
        } else if (macros.containsKey(com[0])) {
            src = s1 + macros.get(com[0]) + s3;
        } else
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing resource " + name);
    }
    return src;
}

Example 82 with Resource

use of org.hl7.fhir.r5.model.Resource in project kindling by HL7.

the class PageProcessor method genOperationList.

private String genOperationList() throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("<table class=\"grid\">");
    b.append(" <tr><td colspan=\"2\"><b>Base Operations (All resource types)</b></td></tr>\r\n");
    for (ResourceDefn r : definitions.getBaseResources().values()) {
        genOperationDetails(b, r.getName(), r.getOperations(), true);
    }
    b.append(" <tr><td colspan=\"2\"><b>Operations Defined by Resource Types</b></td></tr>\r\n");
    for (String n : definitions.sortedResourceNames()) {
        ResourceDefn r = definitions.getResourceByName(n);
        genOperationDetails(b, n, r.getOperations(), false);
    }
    // b.append(" <tr><td colspan=\"2\"><b>Operations Defined by Implementation Guides</b></td></tr>\r\n");
    // for (ImplementationGuideDefn ig : definitions.getSortedIgs()) {
    // for (Profile p : ig.getProfiles()) {
    // if (!p.getOperations().isEmpty())
    // genOperationDetails(b, ig.getCode()+File.separator+p.getId(), p.getOperations(), false);
    // }
    // }
    b.append("</table>");
    return b.toString();
}

Example 83 with Resource

use of org.hl7.fhir.r5.model.Resource in project kindling by HL7.

the class PageProcessor method getEventsTable.

private String getEventsTable(String resource) throws Exception {
    List<String> codes = new ArrayList<String>();
    codes.addAll(definitions.getEvents().keySet());
    Collections.sort(codes);
    StringBuilder s = new StringBuilder();
    s.append("<table class=\"grid\">\r\n");
    s.append(" <tr><th>Code</th><th>Category</th><th>Description</th><th>Request Resources</th><th>Response Resources</th><th>Notes</th></tr>\r\n");
    for (String c : codes) {
        EventDefn e = definitions.getEvents().get(c);
        if (e.getUsages().size() == 1) {
            EventUsage u = e.getUsages().get(0);
            s.append(" <tr><td>" + e.getCode() + "<a name=\"" + e.getCode() + "\"> </a></td><td>" + (e.getCategory() == null ? "??" : e.getCategory().toString()) + "</td><td>" + e.getDefinition() + "</td>");
            s.append("<td>" + describeMsg(u.getRequestResources(), u.getRequestAggregations()) + "</td><td>" + describeMsg(u.getResponseResources(), u.getResponseAggregations()) + "</td><td>" + combineNotes(resource, e.getFollowUps(), u.getNotes(), "") + "</td></tr>\r\n");
        } else {
            boolean first = true;
            for (EventUsage u : e.getUsages()) {
                if (first)
                    s.append(" <tr><td rowspan=\"" + Integer.toString(e.getUsages().size()) + "\">" + e.getCode() + "</td><td rowspan=\"" + Integer.toString(e.getUsages().size()) + "\">" + e.getDefinition() + "</td>");
                else
                    s.append(" <tr>");
                first = false;
                s.append("<td>" + describeMsg(u.getRequestResources(), u.getRequestAggregations()) + "</td><td>" + describeMsg(u.getResponseResources(), u.getResponseAggregations()) + "</td><td>" + combineNotes(resource, e.getFollowUps(), u.getNotes(), "") + "</td></tr>\r\n");
            }
        }
    }
    s.append("</table>\r\n");
    return s.toString();
}

Example 84 with Resource

use of org.hl7.fhir.r5.model.Resource in project kindling by HL7.

the class PageProcessor method parseConceptMapMapping.

private ConceptMap parseConceptMapMapping(ElementDefn logical, ElementDefinition resource, String src) throws FHIRException {
    if (!src.startsWith("{map:"))
        return null;
    ConceptMap map = new ConceptMap();
    map.setId(logical.getPath() + "2" + resource.getPath());
    map.setUrl("http://hl7.org/fhir/ConceptMap/" + map.getId());
    map.setVersion(version.toCode());
    ConceptMapGroupComponent grp = map.addGroup();
    String[] statements = src.substring(0, src.length() - 1).substring(5).split("\\;");
    if (statements.length == 0)
        throw new FHIRException("Unable to parse map details '" + src + "'");
    for (String s : statements) {
        String[] p = s.split("\\=");
        if (p.length < 2)
            throw new FHIRException("Unable to parse map details '" + src + "'");
        if (":default".equals(p[0].trim())) {
            grp.getUnmapped().setMode(ConceptMapGroupUnmappedMode.FIXED);
            grp.getUnmapped().setCode(p[1].trim());
        } else {
            grp.addElement().setCode(p[0].trim()).addTarget().setRelationship(ConceptMapRelationship.EQUIVALENT).setCode(p[1].trim());
        }
    }
    return map;
}

Example 85 with Resource

use of org.hl7.fhir.r5.model.Resource in project kindling by HL7.

the class PageProcessor method presentContext.

private Object presentContext(StructureDefinition cs, String resource) {
    StringBuilder b = new StringBuilder();
    boolean first = true;
    for (StructureDefinitionContextComponent c : cs.getContext()) {
        if (appliesTo(c, resource)) {
            if (first)
                first = false;
            else
                b.append(", ");
            if (c.getType() != ExtensionContextType.ELEMENT)
                b.append("<a href=\"codesystem-extension-context-type.html#" + c.getType().toCode() + "\">" + c.getType().toCode() + "</a>: ");
            b.append("<code>" + c.getExpression() + "</code>");
        }
    }
    return b.toString();
}