Examples with StructureDefinitionMappingComponent org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionMappingComponent used on opensource projects

Example 11 with StructureDefinitionMappingComponent

use of org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class StructureDefinitionSpreadsheetGenerator method configureSheet.

public void configureSheet(Sheet sheet, StructureDefinition sd) throws IOException {
    for (int i = 0; i < 34; i++) {
        sheet.autoSizeColumn(i);
    }
    sheet.setColumnHidden(2, true);
    sheet.setColumnHidden(3, true);
    sheet.setColumnHidden(30, true);
    sheet.setColumnHidden(31, true);
    sheet.setColumnHidden(32, true);
    sheet.setColumnWidth(9, columnPixels(20));
    sheet.setColumnWidth(11, columnPixels(100));
    sheet.setColumnWidth(12, columnPixels(100));
    sheet.setColumnWidth(13, columnPixels(100));
    sheet.setColumnWidth(15, columnPixels(20));
    sheet.setColumnWidth(16, columnPixels(20));
    sheet.setColumnWidth(17, columnPixels(20));
    sheet.setColumnWidth(18, columnPixels(20));
    sheet.setColumnWidth(34, columnPixels(100));
    int i = titles.length - 1;
    for (StructureDefinitionMappingComponent map : sd.getMapping()) {
        i++;
        sheet.setColumnWidth(i, columnPixels(50));
        sheet.autoSizeColumn(i);
    // sheet.setColumnHidden(i,  true);
    }
    sheet.createFreezePane(2, 1);
    if (hideMustSupportFalse) {
        SheetConditionalFormatting sheetCF = sheet.getSheetConditionalFormatting();
        String address = "A2:AI" + Math.max(Integer.valueOf(sheet.getLastRowNum()), 2);
        CellRangeAddress[] regions = { CellRangeAddress.valueOf(address) };
        ConditionalFormattingRule rule1 = sheetCF.createConditionalFormattingRule("$G2<>\"Y\"");
        PatternFormatting fill1 = rule1.createPatternFormatting();
        fill1.setFillBackgroundColor(IndexedColors.GREY_25_PERCENT.index);
        fill1.setFillPattern(PatternFormatting.SOLID_FOREGROUND);
        ConditionalFormattingRule rule2 = sheetCF.createConditionalFormattingRule("$Q2<>\"\"");
        FontFormatting font = rule2.createFontFormatting();
        font.setFontColorIndex(IndexedColors.GREY_25_PERCENT.index);
        font.setFontStyle(true, false);
        sheetCF.addConditionalFormatting(regions, rule1, rule2);
        sheet.setAutoFilter(new CellRangeAddress(0, sheet.getLastRowNum(), 0, titles.length + sd.getMapping().size() - 1));
        XSSFSheet xSheet = (XSSFSheet) sheet;
        CTAutoFilter sheetFilter = xSheet.getCTWorksheet().getAutoFilter();
        CTFilterColumn filterColumn1 = sheetFilter.addNewFilterColumn();
        filterColumn1.setColId(6);
        CTCustomFilters filters = filterColumn1.addNewCustomFilters();
        CTCustomFilter filter1 = filters.addNewCustomFilter();
        filter1.setOperator(STFilterOperator.NOT_EQUAL);
        filter1.setVal(" ");
        CTFilterColumn filterColumn2 = sheetFilter.addNewFilterColumn();
        filterColumn2.setColId(26);
        CTFilters filters2 = filterColumn2.addNewFilters();
        filters2.setBlank(true);
        // We have to apply the filter ourselves by hiding the rows:
        for (Row row : sheet) {
            if (row.getRowNum() > 0 && (!row.getCell(6).getStringCellValue().equals("Y") || !row.getCell(26).getStringCellValue().isEmpty())) {
                ((XSSFRow) row).getCTRow().setHidden(true);
            }
        }
    }
    sheet.setActiveCell(new CellAddress(sheet.getRow(1).getCell(0)));
}

Example 12 with StructureDefinitionMappingComponent

use of org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class StructureDefinitionSpreadsheetGenerator method processElement.

public void processElement(Sheet sheet, StructureDefinition sd, ElementDefinition ed) throws Exception {
    Row row = sheet.createRow(sheet.getLastRowNum() + 1);
    int i = 0;
    addCell(row, i++, ed.getPath(), styles.get("body"));
    addCell(row, i++, ed.getSliceName());
    addCell(row, i++, itemList(ed.getAlias()));
    addCell(row, i++, ed.getLabel());
    addCell(row, i++, ed.getMin());
    addCell(row, i++, ed.getMax());
    addCell(row, i++, ed.getMustSupport() ? "Y" : "");
    addCell(row, i++, ed.getIsModifier() ? "Y" : "");
    addCell(row, i++, ed.getIsSummary() ? "Y" : "");
    addCell(row, i++, itemList(ed.getType()));
    addCell(row, i++, ed.getShort());
    addCell(row, i++, ed.getDefinition());
    addCell(row, i++, ed.getComment());
    addCell(row, i++, ed.getRequirements());
    addCell(row, i++, ed.getDefaultValue() != null ? renderType(ed.getDefaultValue()) : "");
    addCell(row, i++, ed.getMeaningWhenMissing());
    addCell(row, i++, ed.hasFixed() ? renderType(ed.getFixed()) : "");
    addCell(row, i++, ed.hasPattern() ? renderType(ed.getPattern()) : "");
    // todo...?
    addCell(row, i++, ed.hasExample() ? renderType(ed.getExample().get(0).getValue()) : "");
    addCell(row, i++, ed.hasMinValue() ? renderType(ed.getMinValue()) : "");
    addCell(row, i++, ed.hasMaxValue() ? renderType(ed.getMaxValue()) : "");
    addCell(row, i++, (ed.hasMaxLength() ? Integer.toString(ed.getMaxLength()) : ""));
    if (ed.hasBinding()) {
        addCell(row, i++, ed.getBinding().getStrength() != null ? ed.getBinding().getStrength().toCode() : "");
        addCell(row, i++, ed.getBinding().getDescription());
        if (ed.getBinding().getValueSet() == null)
            addCell(row, i++, "");
        else
            addCell(row, i++, ed.getBinding().getValueSet());
    } else {
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
    }
    addCell(row, i++, itemList(ed.getCode()));
    if (ed.hasSlicing()) {
        addCell(row, i++, itemList(ed.getSlicing().getDiscriminator()));
        addCell(row, i++, ed.getSlicing().getDescription());
        addCell(row, i++, ed.getSlicing().getOrdered());
        addCell(row, i++, ed.getSlicing().getRules() != null ? ed.getSlicing().getRules().toCode() : "");
    } else {
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
    }
    if (ed.getBase() != null) {
        addCell(row, i++, ed.getBase().getPath());
        addCell(row, i++, ed.getBase().getMin());
        addCell(row, i++, ed.getBase().getMax());
    } else {
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
    }
    addCell(row, i++, itemList(ed.getCondition()));
    addCell(row, i++, itemList(ed.getConstraint()));
    for (StructureDefinitionMappingComponent mapKey : sd.getMapping()) {
        String mapString = "";
        for (ElementDefinitionMappingComponent map : ed.getMapping()) {
            if (map.getIdentity().equals(mapKey.getIdentity()))
                mapString = map.getMap();
        }
        addCell(row, i++, mapString);
    }
}

Example 13 with StructureDefinitionMappingComponent

use of org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class StructureDefinitionSpreadsheetGenerator method configureSheet.

public void configureSheet(Sheet sheet, StructureDefinition sd) throws IOException {
    for (int i = 0; i < 34; i++) {
        sheet.autoSizeColumn(i);
    }
    sheet.setColumnHidden(2, true);
    sheet.setColumnHidden(3, true);
    sheet.setColumnHidden(30, true);
    sheet.setColumnHidden(31, true);
    sheet.setColumnHidden(32, true);
    sheet.setColumnWidth(9, columnPixels(20));
    sheet.setColumnWidth(11, columnPixels(100));
    sheet.setColumnWidth(12, columnPixels(100));
    sheet.setColumnWidth(13, columnPixels(100));
    sheet.setColumnWidth(15, columnPixels(20));
    sheet.setColumnWidth(16, columnPixels(20));
    sheet.setColumnWidth(17, columnPixels(20));
    sheet.setColumnWidth(18, columnPixels(20));
    sheet.setColumnWidth(34, columnPixels(100));
    int i = titles.length - 1;
    for (StructureDefinitionMappingComponent map : sd.getMapping()) {
        i++;
        sheet.setColumnWidth(i, columnPixels(50));
        sheet.autoSizeColumn(i);
    // sheet.setColumnHidden(i,  true);
    }
    sheet.createFreezePane(2, 1);
    if (hideMustSupportFalse) {
        SheetConditionalFormatting sheetCF = sheet.getSheetConditionalFormatting();
        String address = "A2:AI" + Math.max(Integer.valueOf(sheet.getLastRowNum()), 2);
        CellRangeAddress[] regions = { CellRangeAddress.valueOf(address) };
        ConditionalFormattingRule rule1 = sheetCF.createConditionalFormattingRule("$G2<>\"Y\"");
        PatternFormatting fill1 = rule1.createPatternFormatting();
        fill1.setFillBackgroundColor(IndexedColors.GREY_25_PERCENT.index);
        fill1.setFillPattern(PatternFormatting.SOLID_FOREGROUND);
        ConditionalFormattingRule rule2 = sheetCF.createConditionalFormattingRule("$Q2<>\"\"");
        FontFormatting font = rule2.createFontFormatting();
        font.setFontColorIndex(IndexedColors.GREY_25_PERCENT.index);
        font.setFontStyle(true, false);
        sheetCF.addConditionalFormatting(regions, rule1, rule2);
        sheet.setAutoFilter(new CellRangeAddress(0, sheet.getLastRowNum(), 0, titles.length + sd.getMapping().size() - 1));
        XSSFSheet xSheet = (XSSFSheet) sheet;
        CTAutoFilter sheetFilter = xSheet.getCTWorksheet().getAutoFilter();
        CTFilterColumn filterColumn1 = sheetFilter.addNewFilterColumn();
        filterColumn1.setColId(6);
        CTCustomFilters filters = filterColumn1.addNewCustomFilters();
        CTCustomFilter filter1 = filters.addNewCustomFilter();
        filter1.setOperator(STFilterOperator.NOT_EQUAL);
        filter1.setVal(" ");
        CTFilterColumn filterColumn2 = sheetFilter.addNewFilterColumn();
        filterColumn2.setColId(26);
        CTFilters filters2 = filterColumn2.addNewFilters();
        filters2.setBlank(true);
        // We have to apply the filter ourselves by hiding the rows:
        for (Row row : sheet) {
            if (row.getRowNum() > 0 && (!row.getCell(6).getStringCellValue().equals("Y") || !row.getCell(26).getStringCellValue().isEmpty())) {
                ((XSSFRow) row).getCTRow().setHidden(true);
            }
        }
    }
    sheet.setActiveCell(new CellAddress(sheet.getRow(1).getCell(0)));
}

Example 14 with StructureDefinitionMappingComponent

use of org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class CSVWriter method processElement.

/*  private void findMapKeys(StructureDefinition def, List<StructureDefinitionMappingComponent> maps, IWorkerContext context) {
  	maps.addAll(def.getMapping());
  	if (def.getBaseDefinition()!=null) {
  	  StructureDefinition base = context.fetchResource(StructureDefinition.class, def.getBaseDefinition());
  	  findMapKeys(base, maps, context);
  	}
  }*/
public void processElement(ElementDefinition ed) throws Exception {
    CSVLine line = new CSVLine();
    lines.add(line);
    line.addString(ed.getId());
    line.addString(ed.getPath());
    line.addString(ed.getSliceName());
    line.addString(itemList(ed.getAlias()));
    line.addString(ed.getLabel());
    line.addValue(ed.getMin());
    line.addValue(ed.getMax());
    line.addString(ed.getMustSupport() ? "Y" : "");
    line.addString(ed.getIsModifier() ? "Y" : "");
    line.addString(ed.getIsSummary() ? "Y" : "");
    line.addString(itemList(ed.getType()));
    line.addString(ed.getShort());
    line.addString(ed.getDefinition());
    line.addString(ed.getComment());
    line.addString(ed.getRequirements());
    line.addString(ed.getDefaultValue() != null ? renderType(ed.getDefaultValue()) : "");
    line.addString(ed.getMeaningWhenMissing());
    line.addString(ed.hasFixed() ? renderType(ed.getFixed()) : "");
    line.addString(ed.hasPattern() ? renderType(ed.getPattern()) : "");
    // todo...?
    line.addString(ed.hasExample() ? renderType(ed.getExample().get(0).getValue()) : "");
    line.addString(ed.hasMinValue() ? renderType(ed.getMinValue()) : "");
    line.addString(ed.hasMaxValue() ? renderType(ed.getMaxValue()) : "");
    line.addValue((ed.hasMaxLength() ? Integer.toString(ed.getMaxLength()) : ""));
    if (ed.hasBinding()) {
        line.addString(ed.getBinding().getStrength() != null ? ed.getBinding().getStrength().toCode() : "");
        line.addString(ed.getBinding().getDescription());
        if (ed.getBinding().getValueSet() == null)
            line.addString("");
        else
            line.addString(ed.getBinding().getValueSet());
    } else {
        line.addValue("");
        line.addValue("");
        line.addValue("");
    }
    line.addString(itemList(ed.getCode()));
    if (ed.hasSlicing()) {
        line.addString(itemList(ed.getSlicing().getDiscriminator()));
        line.addString(ed.getSlicing().getDescription());
        line.addBoolean(ed.getSlicing().getOrdered());
        line.addString(ed.getSlicing().getRules() != null ? ed.getSlicing().getRules().toCode() : "");
    } else {
        line.addValue("");
        line.addValue("");
        line.addValue("");
    }
    if (ed.getBase() != null) {
        line.addString(ed.getBase().getPath());
        line.addValue(ed.getBase().getMin());
        line.addValue(ed.getBase().getMax());
    } else {
        line.addValue("");
        line.addValue("");
        line.addValue("");
    }
    line.addString(itemList(ed.getCondition()));
    line.addString(itemList(ed.getConstraint()));
    for (StructureDefinitionMappingComponent mapKey : def.getMapping()) {
        for (ElementDefinitionMappingComponent map : ed.getMapping()) {
            if (map.getIdentity().equals(mapKey.getIdentity()))
                line.addString(map.getMap());
        }
    }
}

Example 15 with StructureDefinitionMappingComponent

use of org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateGridDescription.

private Cell generateGridDescription(HierarchicalTableGenerator gen, Row row, ElementDefinition definition, ElementDefinition fallback, boolean used, String baseURL, String url, StructureDefinition profile, String corePath, String imagePath, boolean root, ElementDefinition valueDefn) throws IOException, FHIRException {
    Cell c = gen.new Cell();
    row.getCells().add(c);
    if (used) {
        if (definition.hasContentReference()) {
            ElementDefinition ed = getElementByName(profile.getSnapshot().getElement(), definition.getContentReference());
            if (ed == null)
                c.getPieces().add(gen.new Piece(null, "Unknown reference to " + definition.getContentReference(), null));
            else
                c.getPieces().add(gen.new Piece("#" + ed.getPath(), "See " + ed.getPath(), null));
        }
        if (definition.getPath().endsWith("url") && definition.hasFixed()) {
            c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "\"" + buildJson(definition.getFixed()) + "\"", null).addStyle("color: darkgreen")));
        } else {
            if (url != null) {
                if (!c.getPieces().isEmpty())
                    c.addPiece(gen.new Piece("br"));
                String fullUrl = url.startsWith("#") ? baseURL + url : url;
                StructureDefinition ed = context.fetchResource(StructureDefinition.class, url);
                String ref = null;
                if (ed != null) {
                    String p = ed.getUserString("path");
                    if (p != null) {
                        ref = p.startsWith("http:") || igmode ? p : Utilities.pathURL(corePath, p);
                    }
                }
                c.getPieces().add(gen.new Piece(null, "URL: ", null).addStyle("font-weight:bold"));
                c.getPieces().add(gen.new Piece(ref, fullUrl, null));
            }
            if (definition.hasSlicing()) {
                if (!c.getPieces().isEmpty())
                    c.addPiece(gen.new Piece("br"));
                c.getPieces().add(gen.new Piece(null, "Slice: ", null).addStyle("font-weight:bold"));
                c.getPieces().add(gen.new Piece(null, describeSlice(definition.getSlicing()), null));
            }
            if (definition != null) {
                ElementDefinitionBindingComponent binding = null;
                if (valueDefn != null && valueDefn.hasBinding() && !valueDefn.getBinding().isEmpty())
                    binding = valueDefn.getBinding();
                else if (definition.hasBinding())
                    binding = definition.getBinding();
                if (binding != null && !binding.isEmpty()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    BindingResolution br = pkp.resolveBinding(profile, binding, definition.getPath());
                    c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, "Binding: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(binding, gen.new Piece(br.url == null ? null : Utilities.isAbsoluteUrl(br.url) || !pkp.prependLinks() ? br.url : corePath + br.url, br.display, null)));
                    if (binding.hasStrength()) {
                        c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, " (", null)));
                        c.getPieces().add(checkForNoChange(binding, gen.new Piece(corePath + "terminologies.html#" + binding.getStrength().toCode(), binding.getStrength().toCode(), binding.getStrength().getDefinition())));
                        c.getPieces().add(gen.new Piece(null, ")", null));
                    }
                }
                for (ElementDefinitionConstraintComponent inv : definition.getConstraint()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getKey() + ": ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getHuman(), null)));
                }
                if (definition.hasFixed()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "Fixed Value: ", null).addStyle("font-weight:bold")));
                    String s = buildJson(definition.getFixed());
                    String link = null;
                    if (Utilities.isAbsoluteUrl(s))
                        link = pkp.getLinkForUrl(corePath, s);
                    c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(link, s, null).addStyle("color: darkgreen")));
                } else if (definition.hasPattern()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, "Required Pattern: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, buildJson(definition.getPattern()), null).addStyle("color: darkgreen")));
                } else if (definition.hasExample()) {
                    for (ElementDefinitionExampleComponent ex : definition.getExample()) {
                        if (!c.getPieces().isEmpty())
                            c.addPiece(gen.new Piece("br"));
                        c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, "Example'" + ("".equals("General") ? "" : " " + ex.getLabel() + "'") + ": ", null).addStyle("font-weight:bold")));
                        c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, buildJson(ex.getValue()), null).addStyle("color: darkgreen")));
                    }
                }
                if (definition.hasMaxLength() && definition.getMaxLength() != 0) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, "Max Length: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, Integer.toString(definition.getMaxLength()), null).addStyle("color: darkgreen")));
                }
                if (profile != null) {
                    for (StructureDefinitionMappingComponent md : profile.getMapping()) {
                        if (md.hasExtension(ToolingExtensions.EXT_TABLE_NAME)) {
                            ElementDefinitionMappingComponent map = null;
                            for (ElementDefinitionMappingComponent m : definition.getMapping()) if (m.getIdentity().equals(md.getIdentity()))
                                map = m;
                            if (map != null) {
                                for (int i = 0; i < definition.getMapping().size(); i++) {
                                    c.addPiece(gen.new Piece("br"));
                                    c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(md, ToolingExtensions.EXT_TABLE_NAME) + ": " + map.getMap(), null));
                                }
                            }
                        }
                    }
                }
                if (definition.hasDefinition()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(gen.new Piece(null, "Definition: ", null).addStyle("font-weight:bold"));
                    c.addPiece(gen.new Piece("br"));
                    c.addMarkdown(definition.getDefinition());
                // c.getPieces().add(checkForNoChange(definition.getCommentElement(), gen.new Piece(null, definition.getComment(), null)));
                }
                if (definition.getComment() != null) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(gen.new Piece(null, "Comments: ", null).addStyle("font-weight:bold"));
                    c.addPiece(gen.new Piece("br"));
                    c.addMarkdown(definition.getComment());
                // c.getPieces().add(checkForNoChange(definition.getCommentElement(), gen.new Piece(null, definition.getComment(), null)));
                }
            }
        }
    }
    return c;
}