use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeStructureMapStructureMapGroupRuleTargetParameterComponent.
protected void composeStructureMapStructureMapGroupRuleTargetParameterComponent(Complex parent, String parentType, String name, StructureMap.StructureMapGroupRuleTargetParameterComponent element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeBackboneElement(t, "parameter", name, element, index);
if (element.hasValue())
composeType(t, "StructureMap", "value", element.getValue(), -1);
}
use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.
the class SimpleWorkerContext method loadFromPackageInt.
public int loadFromPackageInt(NpmPackage pi, IContextResourceLoader loader, String... types) throws FileNotFoundException, IOException, FHIRException {
int t = 0;
if (progress) {
System.out.println("Load Package " + pi.name() + "#" + pi.version());
}
if (loadedPackages.contains(pi.id() + "#" + pi.version())) {
return 0;
}
loadedPackages.add(pi.id() + "#" + pi.version());
if ((types == null || types.length == 0) && loader != null) {
types = loader.getTypes();
}
if (VersionUtilities.isR2Ver(pi.fhirVersion()) || !pi.canLazyLoad()) {
// can't lazy load R2 because of valueset/codesystem implementation
if (types.length == 0) {
types = new String[] { "StructureDefinition", "ValueSet", "SearchParameter", "OperationDefinition", "Questionnaire", "ConceptMap", "StructureMap", "NamingSystem" };
}
for (String s : pi.listResources(types)) {
try {
loadDefinitionItem(s, pi.load("package", s), loader, null, new PackageVersion(pi.id(), pi.version()));
t++;
} catch (Exception e) {
throw new FHIRException(formatMessage(I18nConstants.ERROR_READING__FROM_PACKAGE__, s, pi.name(), pi.version(), e.getMessage()), e);
}
}
} else {
if (types.length == 0) {
types = new String[] { "StructureDefinition", "ValueSet", "CodeSystem", "SearchParameter", "OperationDefinition", "Questionnaire", "ConceptMap", "StructureMap", "NamingSystem", "Measures" };
}
for (PackageResourceInformation pri : pi.listIndexedResources(types)) {
try {
registerResourceFromPackage(new PackageResourceLoader(pri, loader), new PackageVersion(pi.id(), pi.version()));
t++;
} catch (FHIRException e) {
throw new FHIRException(formatMessage(I18nConstants.ERROR_READING__FROM_PACKAGE__, pri.getFilename(), pi.name(), pi.version(), e.getMessage()), e);
}
}
}
for (String s : pi.list("other")) {
binaries.put(s, TextFile.streamToBytes(pi.load("other", s)));
}
if (version == null) {
version = pi.version();
}
return t;
}
use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.
the class SimpleWorkerContext method findTransformsforSource.
public List<StructureMap> findTransformsforSource(String url) {
List<StructureMap> res = new ArrayList<StructureMap>();
for (StructureMap map : listTransforms()) {
boolean match = false;
boolean ok = true;
for (StructureMapStructureComponent t : map.getStructure()) {
if (t.getMode() == StructureMapModelMode.SOURCE) {
match = match || t.getUrl().equals(url);
ok = ok && t.getUrl().equals(url);
}
}
if (match && ok)
res.add(map);
}
return res;
}
use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method fetchResourceWithException.
@SuppressWarnings("unchecked")
public <T extends Resource> T fetchResourceWithException(String cls, String uri, CanonicalResource source) throws FHIRException {
if (uri == null) {
return null;
}
if ("StructureDefinition".equals(cls)) {
uri = ProfileUtilities.sdNs(uri, getOverrideVersionNs());
}
synchronized (lock) {
String version = null;
if (uri.contains("|")) {
version = uri.substring(uri.lastIndexOf("|") + 1);
uri = uri.substring(0, uri.lastIndexOf("|"));
}
if (uri.contains("#")) {
uri = uri.substring(0, uri.indexOf("#"));
}
if (cls == null || "Resource".equals(cls)) {
if (structures.has(uri)) {
return (T) structures.get(uri, version);
}
if (guides.has(uri)) {
return (T) guides.get(uri, version);
}
if (capstmts.has(uri)) {
return (T) capstmts.get(uri, version);
}
if (measures.has(uri)) {
return (T) measures.get(uri, version);
}
if (libraries.has(uri)) {
return (T) libraries.get(uri, version);
}
if (valueSets.has(uri)) {
return (T) valueSets.get(uri, version);
}
if (codeSystems.has(uri)) {
return (T) codeSystems.get(uri, version);
}
if (operations.has(uri)) {
return (T) operations.get(uri, version);
}
if (searchParameters.has(uri)) {
return (T) searchParameters.get(uri, version);
}
if (plans.has(uri)) {
return (T) plans.get(uri, version);
}
if (maps.has(uri)) {
return (T) maps.get(uri, version);
}
if (transforms.has(uri)) {
return (T) transforms.get(uri, version);
}
if (questionnaires.has(uri)) {
return (T) questionnaires.get(uri, version);
}
for (Map<String, ResourceProxy> rt : allResourcesById.values()) {
for (ResourceProxy r : rt.values()) {
if (uri.equals(r.getUrl())) {
return (T) r.getResource();
}
}
}
} else if ("ImplementationGuide".equals(cls)) {
return (T) guides.get(uri, version);
} else if ("CapabilityStatement".equals(cls)) {
return (T) capstmts.get(uri, version);
} else if ("Measure".equals(cls)) {
return (T) measures.get(uri, version);
} else if ("Library".equals(cls)) {
return (T) libraries.get(uri, version);
} else if ("StructureDefinition".equals(cls)) {
return (T) structures.get(uri, version);
} else if ("StructureMap".equals(cls)) {
return (T) transforms.get(uri, version);
} else if ("ValueSet".equals(cls)) {
return (T) valueSets.get(uri, version);
} else if ("CodeSystem".equals(cls)) {
return (T) codeSystems.get(uri, version);
} else if ("ConceptMap".equals(cls)) {
return (T) maps.get(uri, version);
} else if ("PlanDefinition".equals(cls)) {
return (T) plans.get(uri, version);
} else if ("OperationDefinition".equals(cls)) {
OperationDefinition od = operations.get(uri, version);
return (T) od;
} else if ("Questionnaire.class".equals(cls)) {
return (T) questionnaires.get(uri, version);
} else if ("SearchParameter.class".equals(cls)) {
SearchParameter res = searchParameters.get(uri, version);
return (T) res;
}
if ("CodeSystem".equals(cls) && codeSystems.has(uri)) {
return (T) codeSystems.get(uri, version);
}
if ("ValueSet".equals(cls) && valueSets.has(uri)) {
return (T) valueSets.get(uri, version);
}
if ("Questionnaire".equals(cls)) {
return (T) questionnaires.get(uri, version);
}
if (cls == null) {
if (uri.matches(Constants.URI_REGEX) && !uri.contains("ValueSet")) {
return null;
}
// it might be a special URL.
if (Utilities.isAbsoluteUrl(uri) || uri.startsWith("ValueSet/")) {
// findTxValueSet(uri);
Resource res = null;
if (res != null) {
return (T) res;
}
}
return null;
}
if (supportedCodeSystems.contains(uri)) {
return null;
}
throw new FHIRException(formatMessage(I18nConstants.NOT_DONE_YET_CANT_FETCH_, uri));
}
}
use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.
the class StructureMapUtilities method executeDependency.
private void executeDependency(String indent, TransformContext context, StructureMap map, Variables vin, StructureMapGroupComponent group, StructureMapGroupRuleDependentComponent dependent) throws FHIRException {
ResolvedGroup rg = resolveGroupReference(map, group, dependent.getName());
if (rg.target.getInput().size() != dependent.getVariable().size()) {
throw new FHIRException("Rule '" + dependent.getName() + "' has " + Integer.toString(rg.target.getInput().size()) + " but the invocation has " + Integer.toString(dependent.getVariable().size()) + " variables");
}
Variables v = new Variables();
for (int i = 0; i < rg.target.getInput().size(); i++) {
StructureMapGroupInputComponent input = rg.target.getInput().get(i);
StringType rdp = dependent.getVariable().get(i);
String var = rdp.asStringValue();
VariableMode mode = input.getMode() == StructureMapInputMode.SOURCE ? VariableMode.INPUT : VariableMode.OUTPUT;
Base vv = vin.get(mode, var);
if (// * once source, always source. but target can be treated as source at user convenient
vv == null && mode == VariableMode.INPUT)
vv = vin.get(VariableMode.OUTPUT, var);
if (vv == null)
throw new FHIRException("Rule '" + dependent.getName() + "' " + mode.toString() + " variable '" + input.getName() + "' named as '" + var + "' has no value (vars = " + vin.summary() + ")");
v.add(mode, input.getName(), vv);
}
executeGroup(indent + " ", context, rg.targetMap, v, rg.target, false);
}
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