Examples with StructureMap org.hl7.fhir.r5.model.StructureMap used on opensource projects

Example 36 with StructureMap

use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method executeRule.

private void executeRule(String indent, TransformContext context, StructureMap map, Variables vars, StructureMapGroupComponent group, StructureMapGroupRuleComponent rule, boolean atRoot) throws FHIRException {
    log(indent + "rule : " + rule.getName() + "; vars = " + vars.summary());
    Variables srcVars = vars.copy();
    if (rule.getSource().size() != 1)
        throw new FHIRException("Rule \"" + rule.getName() + "\": not handled yet");
    List<Variables> source = processSource(rule.getName(), context, srcVars, rule.getSource().get(0), map.getUrl(), indent);
    if (source != null) {
        for (Variables v : source) {
            for (StructureMapGroupRuleTargetComponent t : rule.getTarget()) {
                processTarget(rule.getName(), context, v, map, group, t, rule.getSource().size() == 1 ? rule.getSourceFirstRep().getVariable() : null, atRoot, vars);
            }
            if (rule.hasRule()) {
                for (StructureMapGroupRuleComponent childrule : rule.getRule()) {
                    executeRule(indent + "  ", context, map, v, group, childrule, false);
                }
            } else if (rule.hasDependent()) {
                for (StructureMapGroupRuleDependentComponent dependent : rule.getDependent()) {
                    executeDependency(indent + "  ", context, map, v, group, dependent);
                }
            } else if (rule.getSource().size() == 1 && rule.getSourceFirstRep().hasVariable() && rule.getTarget().size() == 1 && rule.getTargetFirstRep().hasVariable() && rule.getTargetFirstRep().getTransform() == StructureMapTransform.CREATE && !rule.getTargetFirstRep().hasParameter()) {
                // simple inferred, map by type
                System.out.println(v.summary());
                Base src = v.get(VariableMode.INPUT, rule.getSourceFirstRep().getVariable());
                Base tgt = v.get(VariableMode.OUTPUT, rule.getTargetFirstRep().getVariable());
                String srcType = src.fhirType();
                String tgtType = tgt.fhirType();
                ResolvedGroup defGroup = resolveGroupByTypes(map, rule.getName(), group, srcType, tgtType);
                Variables vdef = new Variables();
                vdef.add(VariableMode.INPUT, defGroup.target.getInput().get(0).getName(), src);
                vdef.add(VariableMode.OUTPUT, defGroup.target.getInput().get(1).getName(), tgt);
                executeGroup(indent + "  ", context, defGroup.targetMap, vdef, defGroup.target, false);
            }
        }
    }
}

Example 37 with StructureMap

use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method resolveGroupByTypes.

private ResolvedGroup resolveGroupByTypes(StructureMap map, String ruleid, StructureMapGroupComponent source, String srcType, String tgtType) throws FHIRException {
    String kn = "types^" + srcType + ":" + tgtType;
    if (source.hasUserData(kn))
        return (ResolvedGroup) source.getUserData(kn);
    ResolvedGroup res = new ResolvedGroup();
    res.targetMap = null;
    res.target = null;
    for (StructureMapGroupComponent grp : map.getGroup()) {
        if (matchesByType(map, grp, srcType, tgtType)) {
            if (res.targetMap == null) {
                res.targetMap = map;
                res.target = grp;
            } else
                throw new FHIRException("Multiple possible matches looking for rule for '" + srcType + "/" + tgtType + "', from rule '" + ruleid + "'");
        }
    }
    if (res.targetMap != null) {
        source.setUserData(kn, res);
        return res;
    }
    for (UriType imp : map.getImport()) {
        List<StructureMap> impMapList = findMatchingMaps(imp.getValue());
        if (impMapList.size() == 0)
            throw new FHIRException("Unable to find map(s) for " + imp.getValue());
        for (StructureMap impMap : impMapList) {
            if (!impMap.getUrl().equals(map.getUrl())) {
                for (StructureMapGroupComponent grp : impMap.getGroup()) {
                    if (matchesByType(impMap, grp, srcType, tgtType)) {
                        if (res.targetMap == null) {
                            res.targetMap = impMap;
                            res.target = grp;
                        } else
                            throw new FHIRException("Multiple possible matches for rule for '" + srcType + "/" + tgtType + "' in " + res.targetMap.getUrl() + " and " + impMap.getUrl() + ", from rule '" + ruleid + "'");
                    }
                }
            }
        }
    }
    if (res.target == null)
        throw new FHIRException("No matches found for rule for '" + srcType + " to " + tgtType + "' from " + map.getUrl() + ", from rule '" + ruleid + "'");
    source.setUserData(kn, res);
    return res;
}

Example 38 with StructureMap

use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method analyseGroup.

private void analyseGroup(String indent, TransformContext context, StructureMap map, VariablesForProfiling vars, StructureMapGroupComponent group, StructureMapAnalysis result) throws FHIRException {
    log(indent + "Analyse Group : " + group.getName());
    // todo: extends
    // todo: check inputs
    XhtmlNode tr = result.summary.addTag("tr").setAttribute("class", "diff-title");
    XhtmlNode xs = tr.addTag("td");
    XhtmlNode xt = tr.addTag("td");
    for (StructureMapGroupInputComponent inp : group.getInput()) {
        if (inp.getMode() == StructureMapInputMode.SOURCE)
            noteInput(vars, inp, VariableMode.INPUT, xs);
        if (inp.getMode() == StructureMapInputMode.TARGET)
            noteInput(vars, inp, VariableMode.OUTPUT, xt);
    }
    for (StructureMapGroupRuleComponent r : group.getRule()) {
        analyseRule(indent + "  ", context, map, vars, group, r, result);
    }
}

Example 39 with StructureMap

use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method render.

public static String render(StructureMap map) {
    StringBuilder b = new StringBuilder();
    b.append("map \"");
    b.append(map.getUrl());
    b.append("\" = \"");
    b.append(Utilities.escapeJson(map.getName()));
    b.append("\"\r\n\r\n");
    if (map.getDescription() != null) {
        renderMultilineDoco(b, map.getDescription(), 0);
        b.append("\r\n");
    }
    renderConceptMaps(b, map);
    renderUses(b, map);
    renderImports(b, map);
    for (StructureMapGroupComponent g : map.getGroup()) renderGroup(b, g);
    return b.toString();
}

Example 40 with StructureMap

use of org.hl7.fhir.r5.model.StructureMap in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method translate.

public Base translate(TransformContext context, StructureMap map, Base source, String conceptMapUrl, String fieldToReturn) throws FHIRException {
    Coding src = new Coding();
    if (source.isPrimitive()) {
        src.setCode(source.primitiveValue());
    } else if ("Coding".equals(source.fhirType())) {
        Base[] b = source.getProperty("system".hashCode(), "system", true);
        if (b.length == 1)
            src.setSystem(b[0].primitiveValue());
        b = source.getProperty("code".hashCode(), "code", true);
        if (b.length == 1)
            src.setCode(b[0].primitiveValue());
    } else if ("CE".equals(source.fhirType())) {
        Base[] b = source.getProperty("codeSystem".hashCode(), "codeSystem", true);
        if (b.length == 1)
            src.setSystem(b[0].primitiveValue());
        b = source.getProperty("code".hashCode(), "code", true);
        if (b.length == 1)
            src.setCode(b[0].primitiveValue());
    } else
        throw new FHIRException("Unable to translate source " + source.fhirType());
    String su = conceptMapUrl;
    if (conceptMapUrl.equals("http://hl7.org/fhir/ConceptMap/special-oid2uri")) {
        String uri = worker.oid2Uri(src.getCode());
        if (uri == null)
            uri = "urn:oid:" + src.getCode();
        if ("uri".equals(fieldToReturn))
            return new UriType(uri);
        else
            throw new FHIRException("Error in return code");
    } else {
        ConceptMap cmap = null;
        if (conceptMapUrl.startsWith("#")) {
            for (Resource r : map.getContained()) {
                if (r instanceof ConceptMap && ((ConceptMap) r).getId().equals(conceptMapUrl.substring(1))) {
                    cmap = (ConceptMap) r;
                    su = map.getUrl() + "#" + conceptMapUrl;
                }
            }
            if (cmap == null)
                throw new FHIRException("Unable to translate - cannot find map " + conceptMapUrl);
        } else {
            if (conceptMapUrl.contains("#")) {
                String[] p = conceptMapUrl.split("\\#");
                StructureMap mapU = worker.fetchResource(StructureMap.class, p[0]);
                for (Resource r : mapU.getContained()) {
                    if (r instanceof ConceptMap && ((ConceptMap) r).getId().equals(p[1])) {
                        cmap = (ConceptMap) r;
                        su = conceptMapUrl;
                    }
                }
            }
            if (cmap == null)
                cmap = worker.fetchResource(ConceptMap.class, conceptMapUrl);
        }
        Coding outcome = null;
        boolean done = false;
        String message = null;
        if (cmap == null) {
            if (services == null)
                message = "No map found for " + conceptMapUrl;
            else {
                outcome = services.translate(context.getAppInfo(), src, conceptMapUrl);
                done = true;
            }
        } else {
            List<SourceElementComponentWrapper> list = new ArrayList<SourceElementComponentWrapper>();
            for (ConceptMapGroupComponent g : cmap.getGroup()) {
                for (SourceElementComponent e : g.getElement()) {
                    if (!src.hasSystem() && src.getCode().equals(e.getCode()))
                        list.add(new SourceElementComponentWrapper(g, e));
                    else if (src.hasSystem() && src.getSystem().equals(g.getSource()) && src.getCode().equals(e.getCode()))
                        list.add(new SourceElementComponentWrapper(g, e));
                }
            }
            if (list.size() == 0)
                done = true;
            else if (list.get(0).comp.getTarget().size() == 0)
                message = "Concept map " + su + " found no translation for " + src.getCode();
            else {
                for (TargetElementComponent tgt : list.get(0).comp.getTarget()) {
                    if (tgt.getEquivalence() == null || EnumSet.of(ConceptMapEquivalence.EQUAL, ConceptMapEquivalence.RELATEDTO, ConceptMapEquivalence.EQUIVALENT, ConceptMapEquivalence.WIDER).contains(tgt.getEquivalence())) {
                        if (done) {
                            message = "Concept map " + su + " found multiple matches for " + src.getCode();
                            done = false;
                        } else {
                            done = true;
                            outcome = new Coding().setCode(tgt.getCode()).setSystem(list.get(0).group.getTarget());
                        }
                    } else if (tgt.getEquivalence() == ConceptMapEquivalence.UNMATCHED) {
                        done = true;
                    }
                }
                if (!done)
                    message = "Concept map " + su + " found no usable translation for " + src.getCode();
            }
        }
        if (!done)
            throw new FHIRException(message);
        if (outcome == null)
            return null;
        if ("code".equals(fieldToReturn))
            return new CodeType(outcome.getCode());
        else
            return outcome;
    }
}