Examples with Task org.hl7.fhir.r5.model.Task used on opensource projects

Example 81 with Task

use of org.hl7.fhir.r5.model.Task in project Gravity-SDOH-Exchange-RI by FHIR.

the class TaskPollingService method handleFinishedTask.

protected void handleFinishedTask(Bundle resultBundle, Task ehrTask, ServiceRequest ehrServiceRequest, Task cpTask, Endpoint endpoint) {
    if (Task.TaskStatus.COMPLETED.equals(cpTask.getStatus())) {
        ehrServiceRequest.setStatus(ServiceRequest.ServiceRequestStatus.COMPLETED);
        resultBundle.addEntry(FhirUtil.createPutEntry(ehrServiceRequest));
    }
    // property.
    if (Task.TaskStatus.COMPLETED.equals(cpTask.getStatus()) || Task.TaskStatus.CANCELLED.equals(cpTask.getStatus())) {
        // Modify Task.output. If task output is of type resulting-activity and contains a Reference to a proper
        // Procedure - copy output changing a Procedure reference to a local one.
        List<TaskOutputComponent> cpOutputs = cpTask.getOutput().stream().filter(t -> t.getValue() instanceof CodeableConcept || (t.getValue() instanceof Reference && ((Reference) t.getValue()).getReferenceElement().getResourceType().equals(Procedure.class.getSimpleName()))).collect(Collectors.toList());
        if (cpOutputs.size() == 0) {
            log.warn("Not output of type 'http://hl7.org/fhir/us/sdoh-clinicalcare/CodeSystem/sdohcc-temporary-codes|resulting" + "-activity' with a reference to a proper Procedure is present in task with id '{}' at '{}'. " + "Expecting a reference to a Procedure resource.", cpTask.getIdElement().getIdPart(), endpoint.getAddress());
        }
        Map<String, Procedure> cpProcedureMap = getCpProcedures(cpOutputs, endpoint);
        for (Task.TaskOutputComponent cpOutput : cpOutputs) {
            Task.TaskOutputComponent ehrTaskOutput = cpOutput.copy();
            if (cpOutput.getValue() instanceof Reference) {
                Reference cpProcedureReference = (Reference) cpOutput.getValue();
                String cpProcedureId = cpProcedureReference.getReferenceElement().getIdPart();
                Procedure cpProcedure = cpProcedureMap.get(cpProcedureId);
                // All Procedures have the same reason reference as ServiceRequest
                Procedure resultProcedure = copyProcedure(cpProcedure, ehrTask.getFor(), ehrTask.getFocus(), ehrServiceRequest.getReasonReference());
                resultProcedure.setId(IdType.newRandomUuid());
                resultProcedure.addIdentifier().setSystem(endpoint.getAddress()).setValue(cpProcedureId);
                // Add Procedure to result bundle
                resultBundle.addEntry(FhirUtil.createPostEntry(resultProcedure));
                ehrTaskOutput.setValue(FhirUtil.toReference(Procedure.class, resultProcedure.getIdElement().getIdPart(), cpProcedureReference.getDisplay()));
            }
            ehrTask.addOutput(ehrTaskOutput);
        }
    }
}

Example 82 with Task

use of org.hl7.fhir.r5.model.Task in project Gravity-SDOH-Exchange-RI by FHIR.

the class TaskService method update.

public void update(String id, UpdateTaskRequestDto update, UserDto user) {
    Bundle taskBundle = getTask(id, Task.INCLUDE_FOCUS, Task.INCLUDE_OWNER, Organization.INCLUDE_ENDPOINT.setRecurse(true));
    TaskUpdateInfoHolder updateInfo = new TaskUpdateBundleExtractor(id).extract(taskBundle);
    Task task = updateInfo.getTask();
    ServiceRequest serviceRequest = updateInfo.getServiceRequest();
    TaskUpdateBundleFactory updateBundleFactory = new TaskUpdateBundleFactory();
    updateBundleFactory.setTask(task);
    updateBundleFactory.setServiceRequest(serviceRequest);
    updateBundleFactory.setStatus(update.getFhirStatus());
    updateBundleFactory.setStatusReason(update.getStatusReason());
    updateBundleFactory.setComment(update.getComment());
    updateBundleFactory.setUser(user);
    ehrClient.transaction().withBundle(updateBundleFactory.createUpdateBundle()).execute();
    try {
        cpService.sync(task, serviceRequest, updateInfo.getEndpoint());
    } catch (CpClientException exc) {
        ehrClient.transaction().withBundle(new TaskFailBundleFactory(task, serviceRequest, exc.getMessage()).createFailBundle()).execute();
    }
}

Example 83 with Task

use of org.hl7.fhir.r5.model.Task in project Gravity-SDOH-Exchange-RI by FHIR.

the class TaskReferenceResourcesLoader method loadTaskReferences.

private TaskReferencesHolder loadTaskReferences(IGenericClient ehrClient, Task task, String identifierSystem, Bundle bundle) {
    TaskReferenceResolver referenceResolver = new TaskReferenceResolver(task, identifierSystem);
    // Load local references in one transaction
    referenceResolver.setLocalResources(resourceLoader.getResourcesBySystem(openCpClient, identifierSystem, referenceResolver.getLocalReferences()));
    // Load EHR references in one transaction
    referenceResolver.setExternalResources(resourceLoader.getResources(ehrClient, referenceResolver.getExternalReferences()));
    Patient patient = referenceResolver.getPatient();
    if (referenceResolver.createPatient()) {
        updateResourceRefs(patient, ehrClient.getServerBase(), new HashMap());
        // Create CP Patient resource
        bundle.addEntry(FhirUtil.createPostEntry(patient));
    }
    Organization requester = referenceResolver.getRequester();
    if (referenceResolver.createRequester()) {
        // Create CP Organization resource
        bundle.addEntry(FhirUtil.createPostEntry(requester));
    }
    ServiceRequest serviceRequest = referenceResolver.getServiceRequest();
    // Link CP ServiceRequest with Patient
    serviceRequest.setSubject(FhirUtil.toReference(Patient.class, patient.getIdElement().getIdPart()));
    // Create CP ServiceRequest resource
    bundle.addEntry(FhirUtil.createPostEntry(serviceRequest));
    // Link CP Task with Patient, Organization and ServiceRequest
    task.setFor(FhirUtil.toReference(Patient.class, patient.getIdElement().getIdPart(), patient.getNameFirstRep().getNameAsSingleString()));
    task.setRequester(FhirUtil.toReference(Organization.class, requester.getIdElement().getIdPart(), requester.getName()));
    task.setFocus(FhirUtil.toReference(ServiceRequest.class, serviceRequest.getIdElement().getIdPart()));
    return new TaskReferencesHolder(patient, requester, serviceRequest);
}

Example 84 with Task

use of org.hl7.fhir.r5.model.Task in project Gravity-SDOH-Exchange-RI by FHIR.

the class OurTaskPollingService method handleFinishedTask.

protected void handleFinishedTask(Bundle resultBundle, Task task, ServiceRequest serviceRequest, Task ourTask) {
    boolean isFinished = false;
    if (TaskStatus.COMPLETED.equals(ourTask.getStatus())) {
        serviceRequest.setStatus(ServiceRequest.ServiceRequestStatus.COMPLETED);
        resultBundle.addEntry(FhirUtil.createPutEntry(serviceRequest));
        isFinished = true;
    } else if (TaskStatus.CANCELLED.equals(ourTask.getStatus()) || TaskStatus.REJECTED.equals(ourTask.getStatus()) || TaskStatus.FAILED.equals(ourTask.getStatus())) {
        serviceRequest.setStatus(ServiceRequest.ServiceRequestStatus.REVOKED);
        resultBundle.addEntry(FhirUtil.createPutEntry(serviceRequest));
        isFinished = true;
    }
    // property.
    if (isFinished) {
        // Modify Task.output. If task output is of type resulting-activity and contains a Reference to a proper
        // Procedure - copy output changing a Procedure reference to a local one.
        List<TaskOutputComponent> ourTaskOutputs = ourTask.getOutput().stream().filter(t -> t.getValue() instanceof CodeableConcept || (t.getValue() instanceof Reference && ((Reference) t.getValue()).getReferenceElement().getResourceType().equals(Procedure.class.getSimpleName()))).collect(Collectors.toList());
        if (ourTaskOutputs.size() == 0) {
            log.warn("No output of type 'http://hl7.org/fhir/us/sdoh-clinicalcare/CodeSystem/sdohcc-temporary-codes|resulting" + "-activity' with a reference to a proper Procedure is present in task with id '{}'. " + "Expecting a reference to a Procedure resource.", ourTask.getIdElement().getIdPart());
        }
        Map<String, Procedure> ourProcedureMap = getOurTaskProcedures(ourTaskOutputs);
        for (TaskOutputComponent ourTaskOutput : ourTaskOutputs) {
            TaskOutputComponent taskOutput = ourTaskOutput.copy();
            if (ourTaskOutput.getValue() instanceof Reference) {
                Reference ourProcedureReference = (Reference) ourTaskOutput.getValue();
                String ourProcedureId = ourProcedureReference.getReferenceElement().getIdPart();
                Procedure ourProcedure = ourProcedureMap.get(ourProcedureId);
                // All Procedures have the same reason reference as ServiceRequest
                Procedure resultProcedure = copyProcedure(ourProcedure, task.getFor(), task.getFocus(), serviceRequest.getReasonReference());
                resultProcedure.setId(IdType.newRandomUuid());
                // TODO add identifier
                // resultProcedure.addIdentifier()
                // .setSystem(SERVER_BASE)
                // .setValue(ourProcedureId);
                // Add Procedure to result bundle
                resultBundle.addEntry(FhirUtil.createPostEntry(resultProcedure));
                taskOutput.setValue(FhirUtil.toReference(Procedure.class, resultProcedure.getIdElement().getIdPart(), ourProcedureReference.getDisplay()));
            }
            task.addOutput(taskOutput);
        }
    }
}

Example 85 with Task

use of org.hl7.fhir.r5.model.Task in project Gravity-SDOH-Exchange-RI by FHIR.

the class OurTaskService method read.

public TaskDto read(String id) {
    Bundle taskBundle = taskRepository.find(id, Lists.newArrayList(Task.INCLUDE_FOCUS, Task.INCLUDE_BASED_ON, Task.INCLUDE_OWNER.asNonRecursive()));
    Task ourTask = FhirUtil.getFirstFromBundle(taskBundle, Task.class);
    if (Objects.isNull(ourTask)) {
        throw new ResourceNotFoundException(new IdType(Task.class.getSimpleName(), id));
    }
    if (!ourTask.getIntent().equals(Task.TaskIntent.FILLERORDER)) {
        throw new TaskReadException("The intent of Task/" + id + " is not filler-order.");
    }
    return new OurTaskBundleToDtoConverter().convert(taskBundle).stream().findFirst().get();
}