Examples with UriType org.hl7.fhir.r5.model.UriType used on opensource projects

Example 31 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class R2ToR5Loader method loadBundle.

@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r2 = null;
    if (isJson)
        r2 = new JsonParser().parse(stream);
    else
        r2 = new XmlParser().parse(stream);
    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_10_50.convertResource(r2, advisor);
    Bundle b;
    if (r5 instanceof Bundle) {
        b = (Bundle) r5;
    } else {
        b = new Bundle();
        b.setId(UUID.randomUUID().toString().toLowerCase());
        b.setType(BundleType.COLLECTION);
        b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
    }
    // Add any code systems defined as part of processing value sets to the end of the converted Bundle
    for (CodeSystem cs : advisor.getCslist()) {
        BundleEntryComponent be = b.addEntry();
        be.setFullUrl(cs.getUrl());
        be.setResource(cs);
    }
    advisor.getCslist().clear();
    if (killPrimitives) {
        List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
                    remove.add(be);
            }
        }
        b.getEntry().removeAll(remove);
    }
    if (patchUrls) {
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2));
                sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
            }
        }
    }
    return b;
}

Example 32 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class R3ToR5Loader method loadResource.

@Override
public org.hl7.fhir.r5.model.Resource loadResource(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r3 = null;
    if (isJson)
        r3 = new JsonParser().parse(stream);
    else
        r3 = new XmlParser().parse(stream);
    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_30_50.convertResource(r3);
    setPath(r5);
    if (!advisor.getCslist().isEmpty()) {
        throw new FHIRException("Error: Cannot have included code systems");
    }
    if (killPrimitives) {
        throw new FHIRException("Cannot kill primitives when using deferred loading");
    }
    if (patchUrls) {
        if (r5 instanceof StructureDefinition) {
            StructureDefinition sd = (StructureDefinition) r5;
            sd.setUrl(sd.getUrl().replace(URL_BASE, URL_R4));
            sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
            for (ElementDefinition ed : sd.getSnapshot().getElement()) patchUrl(ed);
            for (ElementDefinition ed : sd.getDifferential().getElement()) patchUrl(ed);
        }
    }
    return r5;
}

Example 33 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class R3ToR5Loader method loadBundle.

@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r3 = null;
    if (isJson)
        r3 = new JsonParser().parse(stream);
    else
        r3 = new XmlParser().parse(stream);
    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_30_50.convertResource(r3, advisor);
    Bundle b;
    if (r5 instanceof Bundle)
        b = (Bundle) r5;
    else {
        b = new Bundle();
        b.setId(UUID.randomUUID().toString().toLowerCase());
        b.setType(BundleType.COLLECTION);
        b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
    }
    for (CodeSystem cs : advisor.getCslist()) {
        BundleEntryComponent be = b.addEntry();
        be.setFullUrl(cs.getUrl());
        be.setResource(cs);
    }
    if (killPrimitives) {
        List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
                    remove.add(be);
            }
        }
        b.getEntry().removeAll(remove);
    }
    if (patchUrls) {
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU3));
                sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
                for (ElementDefinition ed : sd.getSnapshot().getElement()) patchUrl(ed);
                for (ElementDefinition ed : sd.getDifferential().getElement()) patchUrl(ed);
            }
        }
    }
    return b;
}

Example 34 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class R2ToR3Loader method loadBundle.

@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r2;
    if (isJson)
        r2 = new JsonParser().parse(stream);
    else
        r2 = new XmlParser().parse(stream);
    org.hl7.fhir.dstu3.model.Resource r3 = VersionConvertorFactory_10_30.convertResource(r2, advisor_10_30);
    Bundle b;
    if (r3 instanceof Bundle) {
        b = (Bundle) r3;
    } else {
        b = new Bundle();
        b.setId(UUID.randomUUID().toString().toLowerCase());
        b.setType(BundleType.COLLECTION);
        b.addEntry().setResource(r3).setFullUrl(r3 instanceof MetadataResource ? ((MetadataResource) r3).getUrl() : null);
    }
    advisor_10_30.getCslist().forEach(cs -> {
        BundleEntryComponent be = b.addEntry();
        be.setFullUrl(cs.getUrl());
        be.setResource(cs);
    });
    advisor_10_30.getCslist().clear();
    if (killPrimitives) {
        List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
                    remove.add(be);
            }
        }
        b.getEntry().removeAll(remove);
    }
    if (patchUrls) {
        b.getEntry().stream().filter(be -> be.hasResource() && be.getResource() instanceof StructureDefinition).map(be -> (StructureDefinition) be.getResource()).forEach(sd -> {
            sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2));
            sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
        });
    }
    return b;
}

Example 35 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class JsonParser method composeType.

protected void composeType(String prefix, Type type) throws IOException {
    if (type == null)
        ;
    else if (type instanceof Age)
        composeAge(prefix + "Age", (Age) type);
    else if (type instanceof Count)
        composeCount(prefix + "Count", (Count) type);
    else if (type instanceof Money)
        composeMoney(prefix + "Money", (Money) type);
    else if (type instanceof Distance)
        composeDistance(prefix + "Distance", (Distance) type);
    else if (type instanceof Duration)
        composeDuration(prefix + "Duration", (Duration) type);
    else if (type instanceof SimpleQuantity)
        composeSimpleQuantity(prefix + "SimpleQuantity", (SimpleQuantity) type);
    else if (type instanceof Period)
        composePeriod(prefix + "Period", (Period) type);
    else if (type instanceof Coding)
        composeCoding(prefix + "Coding", (Coding) type);
    else if (type instanceof Range)
        composeRange(prefix + "Range", (Range) type);
    else if (type instanceof Quantity)
        composeQuantity(prefix + "Quantity", (Quantity) type);
    else if (type instanceof Attachment)
        composeAttachment(prefix + "Attachment", (Attachment) type);
    else if (type instanceof Ratio)
        composeRatio(prefix + "Ratio", (Ratio) type);
    else if (type instanceof Annotation)
        composeAnnotation(prefix + "Annotation", (Annotation) type);
    else if (type instanceof SampledData)
        composeSampledData(prefix + "SampledData", (SampledData) type);
    else if (type instanceof Reference)
        composeReference(prefix + "Reference", (Reference) type);
    else if (type instanceof CodeableConcept)
        composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
    else if (type instanceof Identifier)
        composeIdentifier(prefix + "Identifier", (Identifier) type);
    else if (type instanceof Signature)
        composeSignature(prefix + "Signature", (Signature) type);
    else if (type instanceof TriggerDefinition)
        composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
    else if (type instanceof ElementDefinition)
        composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
    else if (type instanceof Timing)
        composeTiming(prefix + "Timing", (Timing) type);
    else if (type instanceof ModuleMetadata)
        composeModuleMetadata(prefix + "ModuleMetadata", (ModuleMetadata) type);
    else if (type instanceof ActionDefinition)
        composeActionDefinition(prefix + "ActionDefinition", (ActionDefinition) type);
    else if (type instanceof Address)
        composeAddress(prefix + "Address", (Address) type);
    else if (type instanceof HumanName)
        composeHumanName(prefix + "HumanName", (HumanName) type);
    else if (type instanceof DataRequirement)
        composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
    else if (type instanceof Meta)
        composeMeta(prefix + "Meta", (Meta) type);
    else if (type instanceof ParameterDefinition)
        composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
    else if (type instanceof ContactPoint)
        composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
    else if (type instanceof MarkdownType) {
        composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
        composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
    } else if (type instanceof UnsignedIntType) {
        composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
        composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
    } else if (type instanceof CodeType) {
        composeCodeCore(prefix + "Code", (CodeType) type, false);
        composeCodeExtras(prefix + "Code", (CodeType) type, false);
    } else if (type instanceof IdType) {
        composeIdCore(prefix + "Id", (IdType) type, false);
        composeIdExtras(prefix + "Id", (IdType) type, false);
    } else if (type instanceof OidType) {
        composeOidCore(prefix + "Oid", (OidType) type, false);
        composeOidExtras(prefix + "Oid", (OidType) type, false);
    } else if (type instanceof PositiveIntType) {
        composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
        composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
    } else if (type instanceof UuidType) {
        composeUuidCore(prefix + "Uuid", (UuidType) type, false);
        composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
    } else if (type instanceof IntegerType) {
        composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
        composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
    } else if (type instanceof DateTimeType) {
        composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
        composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
    } else if (type instanceof DateType) {
        composeDateCore(prefix + "Date", (DateType) type, false);
        composeDateExtras(prefix + "Date", (DateType) type, false);
    } else if (type instanceof DecimalType) {
        composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
        composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
    } else if (type instanceof UriType) {
        composeUriCore(prefix + "Uri", (UriType) type, false);
        composeUriExtras(prefix + "Uri", (UriType) type, false);
    } else if (type instanceof Base64BinaryType) {
        composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
        composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
    } else if (type instanceof TimeType) {
        composeTimeCore(prefix + "Time", (TimeType) type, false);
        composeTimeExtras(prefix + "Time", (TimeType) type, false);
    } else if (type instanceof StringType) {
        composeStringCore(prefix + "String", (StringType) type, false);
        composeStringExtras(prefix + "String", (StringType) type, false);
    } else if (type instanceof BooleanType) {
        composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
        composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
    } else if (type instanceof InstantType) {
        composeInstantCore(prefix + "Instant", (InstantType) type, false);
        composeInstantExtras(prefix + "Instant", (InstantType) type, false);
    } else
        throw new Error("Unhandled type");
}