Examples with ValueSetExpansionOutcome org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome used on opensource projects

Example 66 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpansionCache method loadCache.

private void loadCache() throws FHIRFormatError, IOException {
    File[] files = new File(cacheFolder).listFiles();
    for (File f : files) {
        if (f.getName().endsWith(".xml")) {
            final FileInputStream is = new FileInputStream(f);
            try {
                Resource r = context.newXmlParser().setOutputStyle(OutputStyle.PRETTY).parse(is);
                if (r instanceof OperationOutcome) {
                    OperationOutcome oo = (OperationOutcome) r;
                    expansions.put(ToolingExtensions.getExtension(oo, VS_ID_EXT).getValue().toString(), new ValueSetExpansionOutcome(new XhtmlComposer(XhtmlComposer.XML, false).composePlainText(oo.getText().getDiv()), TerminologyServiceErrorClass.UNKNOWN));
                } else if (r instanceof ValueSet) {
                    ValueSet vs = (ValueSet) r;
                    if (vs.hasExpansion())
                        expansions.put(vs.getUrl(), new ValueSetExpansionOutcome(vs));
                    else {
                        canonicals.put(vs.getUrl(), vs);
                        if (vs.hasVersion())
                            canonicals.put(vs.getUrl() + "|" + vs.getVersion(), vs);
                    }
                } else if (r instanceof CanonicalResource) {
                    CanonicalResource md = (CanonicalResource) r;
                    canonicals.put(md.getUrl(), md);
                    if (md.hasVersion())
                        canonicals.put(md.getUrl() + "|" + md.getVersion(), md);
                }
            } finally {
                IOUtils.closeQuietly(is);
            }
        }
    }
}

Example 67 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method expandVS.

@Override
public ValueSetExpansionComponent expandVS(ConceptSetComponent inc) {
    ValueSet vs = new ValueSet();
    vs.setCompose(new ValueSetComposeComponent());
    vs.getCompose().getInclude().add(inc);
    ValueSetExpansionOutcome vse = expandVS(vs, true);
    return vse.getValueset().getExpansion();
}

Example 68 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method expandVS.

@Override
public ValueSetExpansionOutcome expandVS(ValueSet vs, boolean cacheOk) {
    try {
        Map<String, String> params = new HashMap<String, String>();
        params.put("_limit", "10000");
        params.put("_incomplete", "true");
        params.put("profile", "http://www.healthintersections.com.au/fhir/expansion/no-details");
        ValueSet result = txServer.expandValueset(vs, null, params);
        return new ValueSetExpansionOutcome(result);
    } catch (Exception e) {
        return new ValueSetExpansionOutcome("Error expanding ValueSet \"" + vs.getUrl() + ": " + e.getMessage());
    }
}

Example 69 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class ValueSetRenderer method getConceptsForCodes.

private Map<String, ConceptDefinitionComponent> getConceptsForCodes(CodeSystem e, ConceptSetComponent inc) {
    if (e == null) {
        e = getContext().getWorker().fetchCodeSystem(inc.getSystem());
    }
    ValueSetExpansionComponent vse = null;
    if (!context.isNoSlowLookup() && !getContext().getWorker().hasCache()) {
        try {
            ValueSetExpansionOutcome vso = getContext().getWorker().expandVS(inc, false);
            ValueSet valueset = vso.getValueset();
            if (valueset == null)
                throw new TerminologyServiceException("Error Expanding ValueSet: " + vso.getError());
            vse = valueset.getExpansion();
        } catch (TerminologyServiceException e1) {
            return null;
        }
    }
    Map<String, ConceptDefinitionComponent> results = new HashMap<>();
    List<CodingValidationRequest> serverList = new ArrayList<>();
    // 1st pass, anything we can resolve internally
    for (ConceptReferenceComponent cc : inc.getConcept()) {
        String code = cc.getCode();
        ConceptDefinitionComponent v = null;
        if (e != null) {
            v = getConceptForCode(e.getConcept(), code);
        }
        if (v == null && vse != null) {
            v = getConceptForCodeFromExpansion(vse.getContains(), code);
        }
        if (v != null) {
            results.put(code, v);
        } else {
            serverList.add(new CodingValidationRequest(new Coding(inc.getSystem(), code, null)));
        }
    }
    if (!context.isNoSlowLookup() && !serverList.isEmpty()) {
        getContext().getWorker().validateCodeBatch(getContext().getTerminologyServiceOptions(), serverList, null);
        for (CodingValidationRequest vr : serverList) {
            ConceptDefinitionComponent v = vr.getResult().asConceptDefinition();
            if (v != null) {
                results.put(vr.getCoding().getCode(), v);
            }
        }
    }
    return results;
}

Example 70 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class ValueSetRenderer method countMembership.

private Integer countMembership(ValueSet vs) {
    int count = 0;
    if (vs.hasExpansion())
        count = count + conceptCount(vs.getExpansion().getContains());
    else {
        if (vs.hasCompose()) {
            if (vs.getCompose().hasExclude()) {
                try {
                    ValueSetExpansionOutcome vse = getContext().getWorker().expandVS(vs, true, false);
                    count = 0;
                    count += conceptCount(vse.getValueset().getExpansion().getContains());
                    return count;
                } catch (Exception e) {
                    return null;
                }
            }
            for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
                if (inc.hasFilter())
                    return null;
                if (!inc.hasConcept())
                    return null;
                count = count + inc.getConcept().size();
            }
        }
    }
    return count;
}