Examples with ValueSetExpansionOutcome org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome used on opensource projects

Example 71 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method doExpand.

public ValueSetExpansionOutcome doExpand(ValueSet source, Parameters expParams) throws FHIRException, ETooCostly, FileNotFoundException, IOException {
    if (expParams == null)
        expParams = makeDefaultExpansion();
    source.checkNoModifiers("ValueSet", "expanding");
    focus = source.copy();
    focus.setExpansion(new ValueSet.ValueSetExpansionComponent());
    focus.getExpansion().setTimestampElement(DateTimeType.now());
    focus.getExpansion().setIdentifier(Factory.createUUID());
    for (ParametersParameterComponent p : expParams.getParameter()) {
        if (Utilities.existsInList(p.getName(), "includeDesignations", "excludeNested"))
            focus.getExpansion().addParameter().setName(p.getName()).setValue(p.getValue());
    }
    if (source.hasCompose())
        handleCompose(source.getCompose(), focus.getExpansion(), expParams, source.getUrl(), focus.getExpansion().getExtension());
    if (canBeHeirarchy) {
        for (ValueSetExpansionContainsComponent c : roots) {
            focus.getExpansion().getContains().add(c);
        }
    } else {
        for (ValueSetExpansionContainsComponent c : codes) {
            if (map.containsKey(key(c)) && (includeAbstract || !c.getAbstract())) {
                // we may have added abstract codes earlier while we still thought it might be heirarchical, but later we gave up, so now ignore them
                focus.getExpansion().getContains().add(c);
                // make sure any heirarchy is wiped
                c.getContains().clear();
            }
        }
    }
    if (total > 0) {
        focus.getExpansion().setTotal(total);
    }
    return new ValueSetExpansionOutcome(focus);
}

Example 72 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method importValueSet.

private ValueSet importValueSet(String value, ValueSetExpansionComponent exp, Parameters expParams) throws ETooCostly, TerminologyServiceException, FileNotFoundException, IOException, FHIRFormatError {
    if (value == null)
        throw fail("unable to find value set with no identity");
    ValueSet vs = context.fetchResource(ValueSet.class, value);
    if (vs == null) {
        if (context.fetchResource(CodeSystem.class, value) != null) {
            throw fail("Cannot include value set " + value + " because it's actually a code system");
        } else {
            throw fail("Unable to find imported value set " + value);
        }
    }
    ValueSetExpansionOutcome vso = new ValueSetExpanderSimple(context, allErrors).expand(vs, expParams);
    if (vso.getError() != null) {
        addErrors(vso.getAllErrors());
        throw fail("Unable to expand imported value set " + vs.getUrl() + ": " + vso.getError());
    }
    if (vs.hasVersion())
        if (!existsInParams(exp.getParameter(), "version", new UriType(vs.getUrl() + "|" + vs.getVersion())))
            exp.getParameter().add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(vs.getUrl() + "|" + vs.getVersion())));
    for (Extension ex : vso.getValueset().getExpansion().getExtension()) {
        if (ex.getUrl().equals(ToolingExtensions.EXT_EXP_TOOCOSTLY)) {
            if (ex.getValue() instanceof BooleanType) {
                exp.getExtension().add(new Extension(ToolingExtensions.EXT_EXP_TOOCOSTLY).setValue(new UriType(value)));
            } else {
                exp.getExtension().add(ex);
            }
        }
    }
    for (ValueSetExpansionParameterComponent p : vso.getValueset().getExpansion().getParameter()) {
        if (!existsInParams(exp.getParameter(), p.getName(), p.getValue()))
            exp.getParameter().add(p);
    }
    copyExpansion(vso.getValueset().getExpansion().getContains());
    // if we're importing a value set, we have to be combining, so we won't try for a heirarchy
    canBeHeirarchy = false;
    return vso.getValueset();
}

Example 73 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireRenderer method listOptions.

private void listOptions(Questionnaire q, QuestionnaireItemComponent i, XhtmlNode select) {
    if (i.hasAnswerValueSet()) {
        ValueSet vs = null;
        if (!Utilities.noString(i.getAnswerValueSet()) && i.getAnswerValueSet().startsWith("#")) {
            vs = (ValueSet) q.getContained(i.getAnswerValueSet().substring(1));
            if (vs != null && !vs.hasUrl()) {
                vs = vs.copy();
                vs.setUrl(q.getUrl() + "--" + q.getContained(i.getAnswerValueSet().substring(1)));
            }
        } else {
            vs = context.getContext().fetchResource(ValueSet.class, i.getAnswerValueSet());
        }
        if (vs != null) {
            ValueSetExpansionOutcome exp = context.getContext().expandVS(vs, true, false);
            if (exp.getValueset() != null) {
                for (ValueSetExpansionContainsComponent cc : exp.getValueset().getExpansion().getContains()) {
                    select.option(cc.getCode(), cc.hasDisplay() ? cc.getDisplay() : cc.getCode(), false);
                }
                return;
            }
        }
    } else if (i.hasAnswerOption()) {
        renderItemOptions(select, i);
    }
    select.option("a", "??", false);
}

Example 74 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireResponseRenderer method renderLinks.

// private boolean renderFormItem(XhtmlNode x, QuestionnaireResponse q, QuestionnaireItemComponent i, String pfx, int indent) throws IOException {
// boolean hasExt = false;
// XhtmlNode d = x.div().style("width: "+Integer.toString(900-indent*10)+"px; border-top: 1px #eeeeee solid");
// if (indent > 0) {
// d.style("margin-left: "+Integer.toString(10*indent)+"px");
// }
// XhtmlNode display = d.div().style("display: inline-block; width: "+Integer.toString(500-indent*10)+"px");
// XhtmlNode details = d.div().style("border: 1px #ccccff solid; padding: 2px; display: inline-block; background-color: #fefce7; width: 380px");
// XhtmlNode p = display.para();
// if (i.getType() == QuestionnaireItemType.GROUP) {
// p = p.b();
// }
// if (i.hasPrefix()) {
// p.tx(i.getPrefix());
// p.tx(": ");
// }
// p.span(null, "linkId: "+i.getLinkId()).tx(i.getText());
// if (i.getRequired()) {
// p.span("color: red", "Mandatory").tx("*");
// }
// 
// XhtmlNode input = null;
// switch (i.getType()) {
// case STRING:
// p.tx(" ");
// input = p.input(i.getLinkId(), "text", i.getType().getDisplay(), 60);
// break;
// case ATTACHMENT:
// break;
// case BOOLEAN:
// p.tx(" ");
// input = p.input(i.getLinkId(), "checkbox", i.getType().getDisplay(), 1);
// break;
// case CHOICE:
// input = p.select(i.getLinkId());
// listOptions(q, i, input);
// break;
// case DATE:
// p.tx(" ");
// input = p.input(i.getLinkId(), "date", i.getType().getDisplay(), 10);
// break;
// case DATETIME:
// p.tx(" ");
// input = p.input(i.getLinkId(), "datetime-local", i.getType().getDisplay(), 25);
// break;
// case DECIMAL:
// p.tx(" ");
// input = p.input(i.getLinkId(), "number", i.getType().getDisplay(), 15);
// break;
// case DISPLAY:
// break;
// case GROUP:
// 
// break;
// case INTEGER:
// p.tx(" ");
// input = p.input(i.getLinkId(), "number", i.getType().getDisplay(), 10);
// break;
// case OPENCHOICE:
// break;
// case QUANTITY:
// p.tx(" ");
// input = p.input(i.getLinkId(), "number", "value", 15);
// p.tx(" ");
// input = p.input(i.getLinkId(), "unit", "unit", 10);
// break;
// case QUESTION:
// break;
// case REFERENCE:
// break;
// case TEXT:
// break;
// case TIME:
// break;
// case URL:
// break;
// default:
// break;
// }
// if (input != null) {
// if (i.getReadOnly()) {
// input.attribute("readonly", "1");
// input.style("background-color: #eeeeee");
// }
// }
// 
// //  if (i.hasExtension("http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse-choiceOrientation")) {
// //  String code = ToolingExtensions.readStringExtension(i,  "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse-choiceOrientation");
// //  flags.addPiece(gen.new Piece("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-observationLinkPeriod", null, "Orientation: "+code).addHtml(new XhtmlNode(NodeType.Element, "img").attribute("src", Utilities.path(context.getLocalPrefix(), "icon-qi-"+code+".png"))));
// //}
// 
// 
// XhtmlNode ul = details.ul();
// boolean hasFlag = false;
// XhtmlNode flags = item(ul, "Flags");
// item(ul, "linkId", i.getLinkId());
// 
// if (ToolingExtensions.readBoolExtension(i, "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-isSubject")) {
// hasFlag = true;
// flags.ah("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-isSubject", "Can change the subject of the QuestionnaireResponse").img(Utilities.path(context.getLocalPrefix(), "icon-qi-subject.png"));
// }
// if (ToolingExtensions.readBoolExtension(i, "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse-hidden")) {
// hasFlag = true;
// flags.ah(Utilities.pathURL(context.getSpecificationLink(), "extension-QuestionnaireResponse-hidden.html"), "Is a hidden item").img(Utilities.path(context.getLocalPrefix(), "icon-qi-hidden.png"));
// d.style("background-color: #eeeeee");
// }
// if (ToolingExtensions.readBoolExtension(i, "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-optionalDisplay")) {
// hasFlag = true;
// flags.ah("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-optionalDisplay", "Is optional to display").img(Utilities.path(context.getLocalPrefix(), "icon-qi-optional.png"));
// }
// if (i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-observationLinkPeriod")) {
// hasFlag = true;
// flags.ah("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-observationLinkPeriod", "Is linked to an observation").img(Utilities.path(context.getLocalPrefix(), "icon-qi-observation.png"));
// }
// if (i.hasExtension("http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse-displayCategory")) {
// CodeableConcept cc = i.getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse-displayCategory").getValueCodeableConcept();
// String code = cc.getCode("http://hl7.org/fhir/QuestionnaireResponse-display-category");
// hasFlag = true;
// flags.ah("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-displayCategory", "Category: "+code).img(Utilities.path(context.getLocalPrefix(), "icon-qi-"+code+".png"));
// }
// 
// if (i.hasMaxLength()) {
// item(ul, "Max Length", Integer.toString(i.getMaxLength()));
// }
// if (i.hasDefinition()) {
// genDefinitionLink(item(ul, "Definition"), i);
// }
// if (i.hasEnableWhen()) {
// item(ul, "Enable When", "todo");
// }
// if (i.hasAnswerValueSet()) {
// XhtmlNode ans = item(ul, "Answers");
// if (i.getAnswerValueSet().startsWith("#")) {
// ValueSet vs = (ValueSet) q.getContained(i.getAnswerValueSet().substring(1));
// if (vs == null) {
// ans.tx(i.getAnswerValueSet());
// } else {
// ans.ah(vs.getUserString("path")).tx(vs.present());
// }
// } else {
// ValueSet vs = context.getWorker().fetchResource(ValueSet.class, i.getAnswerValueSet());
// if (vs == null  || !vs.hasUserData("path")) {
// ans.tx(i.getAnswerValueSet());
// } else {
// ans.ah(vs.getUserString("path")).tx(vs.present());
// }
// }
// }
// if (i.hasAnswerOption()) {
// item(ul, "Answers", Integer.toString(i.getAnswerOption().size())+" "+Utilities.pluralize("option", i.getAnswerOption().size()), context.getDefinitionsTarget()+"#item."+i.getLinkId());
// }
// if (i.hasInitial()) {
// XhtmlNode vi = item(ul, "Initial Values");
// boolean first = true;
// for (QuestionnaireItemInitialComponent v : i.getInitial()) {
// if (first) first = false; else vi.tx(", ");
// if (v.getValue().isPrimitive()) {
// vi.tx(v.getValue().primitiveValue());
// } else {
// vi.tx("{todo}");
// }
// }
// }
// if (!hasFlag) {
// ul.remove(flags);
// }
// //    if (i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-enableWhenExpression") || i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-itemContext") || i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-calculatedExpression") || i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-contextExpression") || i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-candidateExpression") || i.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-initialExpression")) {
// //      if (!defn.getPieces().isEmpty()) defn.addPiece(gen.new Piece("br"));
// //      defn.getPieces().add(gen.new Piece(null, "Expressions: ", null));
// //      Piece p = gen.new Piece("ul");
// //      defn.getPieces().add(p);
// //      for (Extension e : i.getExtensionsByUrl("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-initialExpression")) {
// //        addExpression(p, e.getValueExpression(), "Initial Value", "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-initialExpression");
// //      }
// //      for (Extension e : i.getExtensionsByUrl("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-contextExpression")) {
// //        addExpression(p, e.getValueExpression(), "Context", "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-contextExpression");
// //      }
// //      for (Extension e : i.getExtensionsByUrl("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-itemContext")) {
// //        addExpression(p, e.getValueExpression(), "Item Context", "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-itemContext");
// //      }
// //      for (Extension e : i.getExtensionsByUrl("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-enableWhenExpression")) {
// //        addExpression(p, e.getValueExpression(), "Enable When", "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-enableWhenExpression");
// //      }
// //      for (Extension e : i.getExtensionsByUrl("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-calculatedExpression")) {
// //        addExpression(p, e.getValueExpression(), "Calculated Value", "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-calculatedExpression");
// //      }
// //      for (Extension e : i.getExtensionsByUrl("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-candidateExpression")) {
// //        addExpression(p, e.getValueExpression(), "Candidates", "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-QuestionnaireResponse-candidateExpression");
// //      }
// //    }
// //
// 
// int t = 1;
// for (QuestionnaireItemComponent c : i.getItem()) {
// hasExt = renderFormItem(x, q, c, pfx == null ? null : pfx+"."+Integer.toString(t), indent+1) || hasExt;
// t++;
// }
// return hasExt;
// }
// 
// private void item(XhtmlNode ul, String name, String value, String valueLink) {
// if (!Utilities.noString(value)) {
// ul.li().style("font-size: 10px").ah(valueLink).tx(name+": "+value);
// }
// }
// 
// private void item(XhtmlNode ul, String name, String value) {
// if (!Utilities.noString(value)) {
// ul.li().style("font-size: 10px").tx(name+": "+value);
// }
// }
// private XhtmlNode item(XhtmlNode ul, String name) {
// XhtmlNode li = ul.li();
// li.style("font-size: 10px").tx(name+": ");
// return li;
// }
// 
// 
// private void listOptions(QuestionnaireResponse q, QuestionnaireItemComponent i, XhtmlNode select) {
// if (i.hasAnswerValueSet()) {
// ValueSet vs = null;
// if (i.getAnswerValueSet().startsWith("#")) {
// vs = (ValueSet) q.getContained(i.getAnswerValueSet().substring(1)).copy();
// if (vs != null && !vs.hasUrl()) {
// vs.setUrl("urn:uuid:"+UUID.randomUUID().toString().toLowerCase());
// }
// } else {
// vs = context.getContext().fetchResource(ValueSet.class, i.getAnswerValueSet());
// }
// if (vs != null) {
// ValueSetExpansionOutcome exp = context.getContext().expandVS(vs, true, false);
// if (exp.getValueset() != null) {
// for (ValueSetExpansionContainsComponent cc : exp.getValueset().getExpansion().getContains()) {
// select.option(cc.getCode(), cc.hasDisplay() ? cc.getDisplay() : cc.getCode(), false);
// }
// return;
// }
// }
// } else if (i.hasAnswerOption()) {
// 
// }
// select.option("a", "??", false);
// }
// 
// public String display(Resource dr) throws UnsupportedEncodingException, IOException {
// return display((QuestionnaireResponse) dr);
// }
// 
// public String display(QuestionnaireResponse q) throws UnsupportedEncodingException, IOException {
// return "QuestionnaireResponse "+q.present();
// }
// 
private boolean renderLinks(XhtmlNode x, QuestionnaireResponse q) {
    x.para().tx("Try this QuestionnaireResponse out:");
    XhtmlNode ul = x.ul();
    ul.li().ah("http://todo.nlm.gov/path?mode=ig&src=" + Utilities.pathURL(context.getSelfLink(), "package.tgz") + "&q=" + q.getId() + ".json").tx("NLM Forms Library");
    return false;
}

Example 75 with ValueSetExpansionOutcome

use of org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome in project org.hl7.fhir.core by hapifhir.

the class ValueSetRenderer method getConceptsForCodes.

private Map<String, ConceptDefinitionComponent> getConceptsForCodes(CodeSystem e, ConceptSetComponent inc) {
    if (e == null) {
        e = getContext().getWorker().fetchCodeSystem(inc.getSystem());
    }
    ValueSetExpansionComponent vse = null;
    if (!context.isNoSlowLookup() && !getContext().getWorker().hasCache()) {
        try {
            ValueSetExpansionOutcome vso = getContext().getWorker().expandVS(inc, false, false);
            ValueSet valueset = vso.getValueset();
            if (valueset == null)
                throw new TerminologyServiceException("Error Expanding ValueSet: " + vso.getError());
            vse = valueset.getExpansion();
        } catch (TerminologyServiceException e1) {
            return null;
        }
    }
    Map<String, ConceptDefinitionComponent> results = new HashMap<>();
    List<CodingValidationRequest> serverList = new ArrayList<>();
    // 1st pass, anything we can resolve internally
    for (ConceptReferenceComponent cc : inc.getConcept()) {
        String code = cc.getCode();
        ConceptDefinitionComponent v = null;
        if (e != null) {
            v = getConceptForCode(e.getConcept(), code);
        }
        if (v == null && vse != null) {
            v = getConceptForCodeFromExpansion(vse.getContains(), code);
        }
        if (v != null) {
            results.put(code, v);
        } else {
            serverList.add(new CodingValidationRequest(new Coding(inc.getSystem(), code, null)));
        }
    }
    if (!context.isNoSlowLookup() && !serverList.isEmpty()) {
        getContext().getWorker().validateCodeBatch(getContext().getTerminologyServiceOptions(), serverList, null);
        for (CodingValidationRequest vr : serverList) {
            ConceptDefinitionComponent v = vr.getResult().asConceptDefinition();
            if (v != null) {
                results.put(vr.getCoding().getCode(), v);
            }
        }
    }
    return results;
}