use of org.hl7.fhir.r5.context.IWorkerContext.CodingValidationRequest in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method validateCodeBatch.
@Override
public void validateCodeBatch(ValidationOptions options, List<? extends CodingValidationRequest> codes, ValueSet vs) {
if (options == null) {
options = ValidationOptions.defaults();
}
// 3rd pass: hit the server
for (CodingValidationRequest t : codes) {
t.setCacheToken(txCache != null ? txCache.generateValidationToken(options, t.getCoding(), vs) : null);
if (t.getCoding().hasSystem()) {
codeSystemsUsed.add(t.getCoding().getSystem());
}
if (txCache != null) {
t.setResult(txCache.getValidation(t.getCacheToken()));
}
}
if (options.isUseClient()) {
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
try {
ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this);
ValidationResult res = vsc.validateCode(t.getCoding());
if (txCache != null) {
txCache.cacheValidation(t.getCacheToken(), res, TerminologyCache.TRANSIENT);
}
t.setResult(res);
} catch (Exception e) {
}
}
}
}
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
String codeKey = t.getCoding().hasVersion() ? t.getCoding().getSystem() + "|" + t.getCoding().getVersion() : t.getCoding().getSystem();
if (!options.isUseServer()) {
t.setResult(new ValidationResult(IssueSeverity.WARNING, formatMessage(I18nConstants.UNABLE_TO_VALIDATE_CODE_WITHOUT_USING_SERVER), TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS));
} else if (unsupportedCodeSystems.contains(codeKey)) {
t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.TERMINOLOGY_TX_SYSTEM_NOTKNOWN, t.getCoding().getSystem()), TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED));
} else if (noTerminologyServer) {
t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.ERROR_VALIDATING_CODE_RUNNING_WITHOUT_TERMINOLOGY_SERVICES), TerminologyServiceErrorClass.NOSERVICE));
}
}
}
if (expParameters == null)
throw new Error(formatMessage(I18nConstants.NO_EXPANSIONPROFILE_PROVIDED));
// for those that that failed, we try to validate on the server
Bundle batch = new Bundle();
batch.setType(BundleType.BATCH);
Set<String> systems = new HashSet<>();
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
Parameters pIn = new Parameters();
pIn.addParameter().setName("coding").setValue(t.getCoding());
if (options.isGuessSystem()) {
pIn.addParameter().setName("implySystem").setValue(new BooleanType(true));
}
if (vs != null) {
pIn.addParameter().setName("valueSet").setResource(vs);
}
pIn.addParameter().setName("profile").setResource(expParameters);
setTerminologyOptions(options, pIn);
BundleEntryComponent be = batch.addEntry();
be.setResource(pIn);
be.getRequest().setMethod(HTTPVerb.POST);
be.getRequest().setUrl("CodeSystem/$validate-code");
be.setUserData("source", t);
systems.add(t.getCoding().getSystem());
}
}
if (batch.getEntry().size() > 0) {
tlog("$batch validate for " + batch.getEntry().size() + " codes on systems " + systems.toString());
if (txClient == null) {
throw new FHIRException(formatMessage(I18nConstants.ATTEMPT_TO_USE_TERMINOLOGY_SERVER_WHEN_NO_TERMINOLOGY_SERVER_IS_AVAILABLE));
}
if (txLog != null) {
txLog.clearLastId();
}
Bundle resp = txClient.validateBatch(batch);
for (int i = 0; i < batch.getEntry().size(); i++) {
CodingValidationRequest t = (CodingValidationRequest) batch.getEntry().get(i).getUserData("source");
BundleEntryComponent r = resp.getEntry().get(i);
if (r.getResource() instanceof Parameters) {
t.setResult(processValidationResult((Parameters) r.getResource()));
if (txCache != null) {
txCache.cacheValidation(t.getCacheToken(), t.getResult(), TerminologyCache.PERMANENT);
}
} else {
t.setResult(new ValidationResult(IssueSeverity.ERROR, getResponseText(r.getResource())).setTxLink(txLog == null ? null : txLog.getLastId()));
}
}
}
}
use of org.hl7.fhir.r5.context.IWorkerContext.CodingValidationRequest in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method constructParameters.
protected Parameters constructParameters(ValidationOptions options, CodingValidationRequest codingValidationRequest, ValueSet valueSet) {
Parameters pIn = new Parameters();
pIn.addParameter().setName("coding").setValue(codingValidationRequest.getCoding());
if (options.isGuessSystem()) {
pIn.addParameter().setName("implySystem").setValue(new BooleanType(true));
}
if (valueSet != null) {
pIn.addParameter().setName("valueSet").setResource(valueSet);
}
pIn.addParameter().setName("profile").setResource(expParameters);
return pIn;
}
use of org.hl7.fhir.r5.context.IWorkerContext.CodingValidationRequest in project org.hl7.fhir.core by hapifhir.
the class ValueSetRenderer method getConceptsForCodes.
private Map<String, ConceptDefinitionComponent> getConceptsForCodes(CodeSystem e, ConceptSetComponent inc) {
if (e == null) {
e = getContext().getWorker().fetchCodeSystem(inc.getSystem());
}
ValueSetExpansionComponent vse = null;
if (!context.isNoSlowLookup() && !getContext().getWorker().hasCache()) {
try {
ValueSetExpansionOutcome vso = getContext().getWorker().expandVS(inc, false);
ValueSet valueset = vso.getValueset();
if (valueset == null)
throw new TerminologyServiceException("Error Expanding ValueSet: " + vso.getError());
vse = valueset.getExpansion();
} catch (TerminologyServiceException e1) {
return null;
}
}
Map<String, ConceptDefinitionComponent> results = new HashMap<>();
List<CodingValidationRequest> serverList = new ArrayList<>();
// 1st pass, anything we can resolve internally
for (ConceptReferenceComponent cc : inc.getConcept()) {
String code = cc.getCode();
ConceptDefinitionComponent v = null;
if (e != null) {
v = getConceptForCode(e.getConcept(), code);
}
if (v == null && vse != null) {
v = getConceptForCodeFromExpansion(vse.getContains(), code);
}
if (v != null) {
results.put(code, v);
} else {
serverList.add(new CodingValidationRequest(new Coding(inc.getSystem(), code, null)));
}
}
if (!context.isNoSlowLookup() && !serverList.isEmpty()) {
getContext().getWorker().validateCodeBatch(getContext().getTerminologyServiceOptions(), serverList, null);
for (CodingValidationRequest vr : serverList) {
ConceptDefinitionComponent v = vr.getResult().asConceptDefinition();
if (v != null) {
results.put(vr.getCoding().getCode(), v);
}
}
}
return results;
}
use of org.hl7.fhir.r5.context.IWorkerContext.CodingValidationRequest in project org.hl7.fhir.core by hapifhir.
the class ValueSetRenderer method getConceptsForCodes.
private Map<String, ConceptDefinitionComponent> getConceptsForCodes(CodeSystem e, ConceptSetComponent inc) {
if (e == null) {
e = getContext().getWorker().fetchCodeSystem(inc.getSystem());
}
ValueSetExpansionComponent vse = null;
if (!context.isNoSlowLookup() && !getContext().getWorker().hasCache()) {
try {
ValueSetExpansionOutcome vso = getContext().getWorker().expandVS(inc, false, false);
ValueSet valueset = vso.getValueset();
if (valueset == null)
throw new TerminologyServiceException("Error Expanding ValueSet: " + vso.getError());
vse = valueset.getExpansion();
} catch (TerminologyServiceException e1) {
return null;
}
}
Map<String, ConceptDefinitionComponent> results = new HashMap<>();
List<CodingValidationRequest> serverList = new ArrayList<>();
// 1st pass, anything we can resolve internally
for (ConceptReferenceComponent cc : inc.getConcept()) {
String code = cc.getCode();
ConceptDefinitionComponent v = null;
if (e != null) {
v = getConceptForCode(e.getConcept(), code);
}
if (v == null && vse != null) {
v = getConceptForCodeFromExpansion(vse.getContains(), code);
}
if (v != null) {
results.put(code, v);
} else {
serverList.add(new CodingValidationRequest(new Coding(inc.getSystem(), code, null)));
}
}
if (!context.isNoSlowLookup() && !serverList.isEmpty()) {
getContext().getWorker().validateCodeBatch(getContext().getTerminologyServiceOptions(), serverList, null);
for (CodingValidationRequest vr : serverList) {
ConceptDefinitionComponent v = vr.getResult().asConceptDefinition();
if (v != null) {
results.put(vr.getCoding().getCode(), v);
}
}
}
return results;
}
use of org.hl7.fhir.r5.context.IWorkerContext.CodingValidationRequest in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method validateCodeBatch.
@Override
public void validateCodeBatch(ValidationOptions options, List<? extends CodingValidationRequest> codes, ValueSet vs) {
if (options == null) {
options = ValidationOptions.defaults();
}
// 3rd pass: hit the server
for (CodingValidationRequest t : codes) {
t.setCacheToken(txCache != null ? txCache.generateValidationToken(options, t.getCoding(), vs) : null);
if (t.getCoding().hasSystem()) {
codeSystemsUsed.add(t.getCoding().getSystem());
}
if (txCache != null) {
t.setResult(txCache.getValidation(t.getCacheToken()));
}
}
if (options.isUseClient()) {
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
try {
ValueSetCheckerSimple vsc = constructValueSetCheckerSimple(options, vs);
ValidationResult res = vsc.validateCode(t.getCoding());
if (txCache != null) {
txCache.cacheValidation(t.getCacheToken(), res, TerminologyCache.TRANSIENT);
}
t.setResult(res);
} catch (Exception e) {
}
}
}
}
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
String codeKey = t.getCoding().hasVersion() ? t.getCoding().getSystem() + "|" + t.getCoding().getVersion() : t.getCoding().getSystem();
if (!options.isUseServer()) {
t.setResult(new ValidationResult(IssueSeverity.WARNING, formatMessage(I18nConstants.UNABLE_TO_VALIDATE_CODE_WITHOUT_USING_SERVER), TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS));
} else if (unsupportedCodeSystems.contains(codeKey)) {
t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.TERMINOLOGY_TX_SYSTEM_NOTKNOWN, t.getCoding().getSystem()), TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED));
} else if (noTerminologyServer) {
t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.ERROR_VALIDATING_CODE_RUNNING_WITHOUT_TERMINOLOGY_SERVICES), TerminologyServiceErrorClass.NOSERVICE));
}
}
}
if (expParameters == null)
throw new Error(formatMessage(I18nConstants.NO_EXPANSIONPROFILE_PROVIDED));
// for those that that failed, we try to validate on the server
Bundle batch = new Bundle();
batch.setType(BundleType.BATCH);
Set<String> systems = new HashSet<>();
for (CodingValidationRequest codingValidationRequest : codes) {
if (!codingValidationRequest.hasResult()) {
Parameters pIn = constructParameters(options, codingValidationRequest, vs);
setTerminologyOptions(options, pIn);
BundleEntryComponent be = batch.addEntry();
be.setResource(pIn);
be.getRequest().setMethod(HTTPVerb.POST);
be.getRequest().setUrl("CodeSystem/$validate-code");
be.setUserData("source", codingValidationRequest);
systems.add(codingValidationRequest.getCoding().getSystem());
}
}
if (batch.getEntry().size() > 0) {
txLog("$batch validate for " + batch.getEntry().size() + " codes on systems " + systems.toString());
if (txClient == null) {
throw new FHIRException(formatMessage(I18nConstants.ATTEMPT_TO_USE_TERMINOLOGY_SERVER_WHEN_NO_TERMINOLOGY_SERVER_IS_AVAILABLE));
}
if (txLog != null) {
txLog.clearLastId();
}
Bundle resp = txClient.validateBatch(batch);
if (resp == null) {
throw new FHIRException(formatMessage(I18nConstants.TX_SERVER_NO_BATCH_RESPONSE));
}
for (int i = 0; i < batch.getEntry().size(); i++) {
CodingValidationRequest t = (CodingValidationRequest) batch.getEntry().get(i).getUserData("source");
BundleEntryComponent r = resp.getEntry().get(i);
if (r.getResource() instanceof Parameters) {
t.setResult(processValidationResult((Parameters) r.getResource()));
if (txCache != null) {
txCache.cacheValidation(t.getCacheToken(), t.getResult(), TerminologyCache.PERMANENT);
}
} else {
t.setResult(new ValidationResult(IssueSeverity.ERROR, getResponseText(r.getResource())).setTxLink(txLog == null ? null : txLog.getLastId()));
}
}
}
}
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