use of org.hl7.fhir.r4b.model.Parameters in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method registerPatient.
@Operation(name = REGISTER_PATIENT_OPERATION_NAME)
public Bundle registerPatient(@ResourceParam Parameters params) {
Patient registeredPatient = null;
validateParameterNames(params, registerPatientParams);
Patient unregisteredPatient = params.getParameter().stream().filter(param -> "registerPatient".equalsIgnoreCase(param.getName())).map(ParametersParameterComponent::getResource).map(Patient.class::cast).findFirst().orElse(null);
String nnn = nhsNumber.fromPatientResource(unregisteredPatient);
// if its patient 14 spoof not on PDS and return the required error
if (nnn.equals(patientNotOnSpine)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) not present on PDS", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
} else if (nnn.equals(patientSuperseded)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) is superseded", nnn)), SystemCode.INVALID_NHS_NUMBER, IssueType.INVALID);
}
if (unregisteredPatient != null) {
validatePatient(unregisteredPatient);
// check if the patient already exists
PatientDetails patientDetails = patientSearch.findPatient(nhsNumber.fromPatientResource(unregisteredPatient));
if (patientDetails == null || IsInactiveTemporaryPatient(patientDetails)) {
if (patientDetails == null) {
patientDetails = registerPatientResourceConverterToPatientDetail(unregisteredPatient);
patientStore.create(patientDetails);
} else {
// reactivate inactive non temporary patient
patientDetails.setRegistrationStatus(ACTIVE_REGISTRATION_STATUS);
updateAddressAndTelecom(unregisteredPatient, patientDetails);
patientStore.update(patientDetails);
}
try {
registeredPatient = patientDetailsToRegisterPatientResourceConverter(patientSearch.findPatient(unregisteredPatient.getIdentifierFirstRep().getValue()));
addPreferredBranchSurgeryExtension(registeredPatient);
} catch (FHIRException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
} else if (patientDetails.isDeceased() || patientDetails.isSensitive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) has invalid demographics", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnclassifiedServerFailureException(409, String.format("Patient (NHS number - %s) already exists", nnn)), SystemCode.DUPLICATE_REJECTED, IssueType.INVALID);
}
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Patient record not found"), SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
Bundle bundle = new Bundle().setType(BundleType.SEARCHSET);
bundle.getMeta().addProfile(SystemURL.SD_GPC_SRCHSET_BUNDLE);
bundle.addEntry().setResource(registeredPatient);
return bundle;
}
use of org.hl7.fhir.r4b.model.Parameters in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method StructuredRecordOperation.
@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
Bundle structuredBundle = new Bundle();
Boolean getAllergies = false;
Boolean includeResolved = false;
Boolean getMedications = false;
Boolean includePrescriptionIssues = false;
Period medicationPeriod = null;
String NHS = getNhsNumber(params);
PatientDetails patientDetails = patientSearch.findPatient(NHS);
// see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
}
if (NHS.equals(patientNoconsent)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
}
operationOutcome = null;
for (ParametersParameterComponent param : params.getParameter()) {
if (validateParametersName(param.getName())) {
if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
getAllergies = true;
if (param.getPart().isEmpty()) {
// addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
boolean includeResolvedParameterPartPresent = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
if (paramPart.getValue() instanceof BooleanType) {
includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
includeResolvedParameterPartPresent = true;
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!includeResolvedParameterPartPresent) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
}
if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
getMedications = true;
boolean isIncludedPrescriptionIssuesExist = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
if (paramPart.getValue() instanceof BooleanType) {
includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
isIncludedPrescriptionIssuesExist = true;
}
} else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
DateType startDateDt = (DateType) paramPart.getValue();
medicationPeriod = new Period();
medicationPeriod.setStart(startDateDt.getValue());
medicationPeriod.setEnd(null);
String startDate = startDateDt.asStringValue();
if (!validateStartDateParamAndEndDateParam(startDate, null)) {
// addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!isIncludedPrescriptionIssuesExist) {
// # 1.2.6 now defaults to true if not provided
includePrescriptionIssues = true;
}
}
} else {
// invalid parameter
addWarningIssue(param, IssueType.NOTSUPPORTED);
}
}
// for parameter
// Add Patient
Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
structuredBundle.addEntry().setResource(patient);
}
// Organization from patient
Set<String> orgIds = new HashSet<>();
orgIds.add(patientDetails.getManagingOrganization());
// Practitioner from patient
Set<String> practitionerIds = new HashSet<>();
List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
practitionerReferenceList.forEach(practitionerReference -> {
String[] pracRef = practitionerReference.getReference().split("/");
if (pracRef.length > 1) {
practitionerIds.add(pracRef[1]);
}
});
if (getAllergies) {
structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
}
if (getMedications) {
structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
}
// Add all practitioners and practitioner roles
for (String practitionerId : practitionerIds) {
Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
structuredBundle.addEntry().setResource(pracResource);
List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
for (PractitionerRole role : practitionerRoleList) {
String[] split = role.getOrganization().getReference().split("/");
orgIds.add(split[1]);
structuredBundle.addEntry().setResource(role);
}
}
// Add all organizations
for (String orgId : orgIds) {
OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
structuredBundle.addEntry().setResource(organization);
}
structuredBundle.setType(BundleType.COLLECTION);
structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
if (operationOutcome != null) {
structuredBundle.addEntry().setResource(operationOutcome);
} else {
removeDuplicateResources(structuredBundle);
}
return structuredBundle;
}
use of org.hl7.fhir.r4b.model.Parameters in project beneficiary-fhir-data by CMSgov.
the class ExplanationOfBenefitResourceProvider method findByPatient.
/**
* Adds support for the FHIR "search" operation for {@link ExplanationOfBenefit}s, allowing users
* to search by {@link ExplanationOfBenefit#getPatient()}.
*
* <p>The {@link Search} annotation indicates that this method supports the search operation.
* There may be many different methods annotated with this {@link Search} annotation, to support
* many different search criteria.
*
* @param patient a {@link ReferenceParam} for the {@link ExplanationOfBenefit#getPatient()} to
* try and find matches for {@link ExplanationOfBenefit}s
* @param type a list of {@link ClaimType} to include in the result. Defaults to all types.
* @param startIndex an {@link OptionalParam} for the startIndex (or offset) used to determine
* pagination
* @param excludeSamhsa an {@link OptionalParam} that, if <code>"true"</code>, will use {@link
* Stu3EobSamhsaMatcher} to filter out all SAMHSA-related claims from the results
* @param lastUpdated an {@link OptionalParam} that specifies a date range for the lastUpdated
* field.
* @param serviceDate an {@link OptionalParam} that specifies a date range for {@link
* ExplanationOfBenefit}s that completed
* @param requestDetails a {@link RequestDetails} containing the details of the request URL, used
* to parse out pagination values
* @return Returns a {@link Bundle} of {@link ExplanationOfBenefit}s, which may contain multiple
* matching resources, or may also be empty.
*/
@Search
@Trace
public Bundle findByPatient(@RequiredParam(name = ExplanationOfBenefit.SP_PATIENT) @Description(shortDefinition = "The patient identifier to search for") ReferenceParam patient, @OptionalParam(name = "type") @Description(shortDefinition = "A list of claim types to include") TokenAndListParam type, @OptionalParam(name = "startIndex") @Description(shortDefinition = "The offset used for result pagination") String startIndex, @OptionalParam(name = "excludeSAMHSA") @Description(shortDefinition = "If true, exclude all SAMHSA-related resources") String excludeSamhsa, @OptionalParam(name = "_lastUpdated") @Description(shortDefinition = "Include resources last updated in the given range") DateRangeParam lastUpdated, @OptionalParam(name = "service-date") @Description(shortDefinition = "Include resources that completed in the given range") DateRangeParam serviceDate, RequestDetails requestDetails) {
/*
* startIndex is an optional parameter here because it must be declared in the
* event it is passed in. However, it is not being used here because it is also
* contained within requestDetails and parsed out along with other parameters
* later.
*/
String beneficiaryId = patient.getIdPart();
Set<ClaimType> claimTypes = parseTypeParam(type);
Boolean includeTaxNumbers = returnIncludeTaxNumbers(requestDetails);
OffsetLinkBuilder paging = new OffsetLinkBuilder(requestDetails, "/ExplanationOfBenefit?");
Operation operation = new Operation(Operation.Endpoint.V1_EOB);
operation.setOption("by", "patient");
operation.setOption("types", (claimTypes.size() == ClaimType.values().length) ? "*" : claimTypes.stream().sorted(Comparator.comparing(ClaimType::name)).collect(Collectors.toList()).toString());
operation.setOption("IncludeTaxNumbers", "" + includeTaxNumbers);
operation.setOption("pageSize", paging.isPagingRequested() ? "" + paging.getPageSize() : "*");
operation.setOption("_lastUpdated", Boolean.toString(lastUpdated != null && !lastUpdated.isEmpty()));
operation.setOption("service-date", Boolean.toString(serviceDate != null && !serviceDate.isEmpty()));
operation.publishOperationName();
List<IBaseResource> eobs = new ArrayList<IBaseResource>();
// Optimize when the lastUpdated parameter is specified and result set is empty
if (loadedFilterManager.isResultSetEmpty(beneficiaryId, lastUpdated)) {
return TransformerUtils.createBundle(paging, eobs, loadedFilterManager.getTransactionTime());
}
/*
* The way our JPA/SQL schema is setup, we have to run a separate search for
* each claim type, then combine the results. It's not super efficient, but it's
* also not so inefficient that it's worth fixing.
*/
if (claimTypes.contains(ClaimType.CARRIER))
eobs.addAll(transformToEobs(ClaimType.CARRIER, findClaimTypeByPatient(ClaimType.CARRIER, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.DME))
eobs.addAll(transformToEobs(ClaimType.DME, findClaimTypeByPatient(ClaimType.DME, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.HHA))
eobs.addAll(transformToEobs(ClaimType.HHA, findClaimTypeByPatient(ClaimType.HHA, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.HOSPICE))
eobs.addAll(transformToEobs(ClaimType.HOSPICE, findClaimTypeByPatient(ClaimType.HOSPICE, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.INPATIENT))
eobs.addAll(transformToEobs(ClaimType.INPATIENT, findClaimTypeByPatient(ClaimType.INPATIENT, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.OUTPATIENT))
eobs.addAll(transformToEobs(ClaimType.OUTPATIENT, findClaimTypeByPatient(ClaimType.OUTPATIENT, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.PDE))
eobs.addAll(transformToEobs(ClaimType.PDE, findClaimTypeByPatient(ClaimType.PDE, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (claimTypes.contains(ClaimType.SNF))
eobs.addAll(transformToEobs(ClaimType.SNF, findClaimTypeByPatient(ClaimType.SNF, beneficiaryId, lastUpdated, serviceDate), Optional.of(includeTaxNumbers)));
if (Boolean.parseBoolean(excludeSamhsa))
filterSamhsa(eobs);
eobs.sort(ExplanationOfBenefitResourceProvider::compareByClaimIdThenClaimType);
// Add bene_id to MDC logs
TransformerUtils.logBeneIdToMdc(Arrays.asList(beneficiaryId));
return TransformerUtils.createBundle(paging, eobs, loadedFilterManager.getTransactionTime());
}
use of org.hl7.fhir.r4b.model.Parameters in project beneficiary-fhir-data by CMSgov.
the class AbstractR4ResourceProvider method createBundleFor.
/**
* Creates a Bundle of resources for the given data using the given {@link ResourceTypeV2}.
*
* @param resourceTypes The {@link ResourceTypeV2} data to retrieve.
* @param mbi The mbi to look up associated data for.
* @param isHashed Denotes if the given mbi is hashed.
* @param lastUpdated Date range of desired lastUpdate values to retrieve data for.
* @param serviceDate Date range of the desired service date to retrieve data for.
* @return A Bundle with data found using the provided parameters.
*/
@VisibleForTesting
Bundle createBundleFor(Set<ResourceTypeV2<T>> resourceTypes, String mbi, boolean isHashed, boolean excludeSamhsa, DateRangeParam lastUpdated, DateRangeParam serviceDate) {
List<T> resources = new ArrayList<>();
for (ResourceTypeV2<T> type : resourceTypes) {
List<?> entities;
entities = claimDao.findAllByMbiAttribute(type.getEntityClass(), type.getEntityMbiRecordAttribute(), mbi, isHashed, lastUpdated, serviceDate, type.getEntityEndDateAttribute());
resources.addAll(entities.stream().filter(e -> !excludeSamhsa || hasNoSamhsaData(metricRegistry, e)).map(e -> type.getTransformer().transform(metricRegistry, e)).collect(Collectors.toList()));
}
Bundle bundle = new Bundle();
resources.forEach(c -> {
Bundle.BundleEntryComponent entry = bundle.addEntry();
entry.setResource((Resource) c);
});
return bundle;
}
use of org.hl7.fhir.r4b.model.Parameters in project beneficiary-fhir-data by CMSgov.
the class TransformerUtilsV2 method findOrAddBenefitBalance.
/**
* @param eob the {@link ExplanationOfBenefit} that the {@link BenefitComponent} should be part of
* @param benefitCategory the {@link BenefitCategory} to map to {@link
* BenefitBalanceComponent#getCategory()}
* @return the already-existing {@link BenefitBalanceComponent} that matches the specified
* parameters, or a new one
*/
private static BenefitBalanceComponent findOrAddBenefitBalance(ExplanationOfBenefit eob, ExBenefitcategory benefitCategory) {
Optional<BenefitBalanceComponent> matchingBenefitBalance = eob.getBenefitBalance().stream().filter(bb -> isCodeInConcept(bb.getCategory(), benefitCategory.getSystem(), benefitCategory.toCode())).findAny();
// Found an existing BenefitBalance that matches the coding system
if (matchingBenefitBalance.isPresent()) {
return matchingBenefitBalance.get();
}
CodeableConcept benefitCategoryConcept = new CodeableConcept();
benefitCategoryConcept.addCoding().setSystem(benefitCategory.getSystem()).setCode(benefitCategory.toCode()).setDisplay(benefitCategory.getDisplay());
BenefitBalanceComponent newBenefitBalance = new BenefitBalanceComponent(benefitCategoryConcept);
eob.addBenefitBalance(newBenefitBalance);
return newBenefitBalance;
}
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