use of org.hl7.fhir.r4b.model.Parameters.ParametersParameterComponent in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method registerPatient.
@Operation(name = REGISTER_PATIENT_OPERATION_NAME)
public Bundle registerPatient(@ResourceParam Parameters params) {
Patient registeredPatient = null;
validateParameterNames(params, registerPatientParams);
Patient unregisteredPatient = params.getParameter().stream().filter(param -> "registerPatient".equalsIgnoreCase(param.getName())).map(ParametersParameterComponent::getResource).map(Patient.class::cast).findFirst().orElse(null);
String nnn = nhsNumber.fromPatientResource(unregisteredPatient);
// if its patient 14 spoof not on PDS and return the required error
if (nnn.equals(patientNotOnSpine)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) not present on PDS", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
} else if (nnn.equals(patientSuperseded)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) is superseded", nnn)), SystemCode.INVALID_NHS_NUMBER, IssueType.INVALID);
}
if (unregisteredPatient != null) {
validatePatient(unregisteredPatient);
// check if the patient already exists
PatientDetails patientDetails = patientSearch.findPatient(nhsNumber.fromPatientResource(unregisteredPatient));
if (patientDetails == null || IsInactiveTemporaryPatient(patientDetails)) {
if (patientDetails == null) {
patientDetails = registerPatientResourceConverterToPatientDetail(unregisteredPatient);
patientStore.create(patientDetails);
} else {
// reactivate inactive non temporary patient
patientDetails.setRegistrationStatus(ACTIVE_REGISTRATION_STATUS);
updateAddressAndTelecom(unregisteredPatient, patientDetails);
patientStore.update(patientDetails);
}
try {
registeredPatient = patientDetailsToRegisterPatientResourceConverter(patientSearch.findPatient(unregisteredPatient.getIdentifierFirstRep().getValue()));
addPreferredBranchSurgeryExtension(registeredPatient);
} catch (FHIRException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
} else if (patientDetails.isDeceased() || patientDetails.isSensitive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) has invalid demographics", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnclassifiedServerFailureException(409, String.format("Patient (NHS number - %s) already exists", nnn)), SystemCode.DUPLICATE_REJECTED, IssueType.INVALID);
}
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Patient record not found"), SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
Bundle bundle = new Bundle().setType(BundleType.SEARCHSET);
bundle.getMeta().addProfile(SystemURL.SD_GPC_SRCHSET_BUNDLE);
bundle.addEntry().setResource(registeredPatient);
return bundle;
}
use of org.hl7.fhir.r4b.model.Parameters.ParametersParameterComponent in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method StructuredRecordOperation.
@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
Bundle structuredBundle = new Bundle();
Boolean getAllergies = false;
Boolean includeResolved = false;
Boolean getMedications = false;
Boolean includePrescriptionIssues = false;
Period medicationPeriod = null;
String NHS = getNhsNumber(params);
PatientDetails patientDetails = patientSearch.findPatient(NHS);
// see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
}
if (NHS.equals(patientNoconsent)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
}
operationOutcome = null;
for (ParametersParameterComponent param : params.getParameter()) {
if (validateParametersName(param.getName())) {
if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
getAllergies = true;
if (param.getPart().isEmpty()) {
// addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
boolean includeResolvedParameterPartPresent = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
if (paramPart.getValue() instanceof BooleanType) {
includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
includeResolvedParameterPartPresent = true;
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!includeResolvedParameterPartPresent) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
}
if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
getMedications = true;
boolean isIncludedPrescriptionIssuesExist = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
if (paramPart.getValue() instanceof BooleanType) {
includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
isIncludedPrescriptionIssuesExist = true;
}
} else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
DateType startDateDt = (DateType) paramPart.getValue();
medicationPeriod = new Period();
medicationPeriod.setStart(startDateDt.getValue());
medicationPeriod.setEnd(null);
String startDate = startDateDt.asStringValue();
if (!validateStartDateParamAndEndDateParam(startDate, null)) {
// addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!isIncludedPrescriptionIssuesExist) {
// # 1.2.6 now defaults to true if not provided
includePrescriptionIssues = true;
}
}
} else {
// invalid parameter
addWarningIssue(param, IssueType.NOTSUPPORTED);
}
}
// for parameter
// Add Patient
Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
structuredBundle.addEntry().setResource(patient);
}
// Organization from patient
Set<String> orgIds = new HashSet<>();
orgIds.add(patientDetails.getManagingOrganization());
// Practitioner from patient
Set<String> practitionerIds = new HashSet<>();
List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
practitionerReferenceList.forEach(practitionerReference -> {
String[] pracRef = practitionerReference.getReference().split("/");
if (pracRef.length > 1) {
practitionerIds.add(pracRef[1]);
}
});
if (getAllergies) {
structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
}
if (getMedications) {
structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
}
// Add all practitioners and practitioner roles
for (String practitionerId : practitionerIds) {
Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
structuredBundle.addEntry().setResource(pracResource);
List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
for (PractitionerRole role : practitionerRoleList) {
String[] split = role.getOrganization().getReference().split("/");
orgIds.add(split[1]);
structuredBundle.addEntry().setResource(role);
}
}
// Add all organizations
for (String orgId : orgIds) {
OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
structuredBundle.addEntry().setResource(organization);
}
structuredBundle.setType(BundleType.COLLECTION);
structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
if (operationOutcome != null) {
structuredBundle.addEntry().setResource(operationOutcome);
} else {
removeDuplicateResources(structuredBundle);
}
return structuredBundle;
}
use of org.hl7.fhir.r4b.model.Parameters.ParametersParameterComponent in project health-patterns by LinuxForHealth.
the class TerminologyService method translateResource.
/**
* Translates the given single FHIR resource represented as a {@link JsonNode}.
*
* @param resource the FHIR resource to translate
* @returns true if there was something to translate, false otherwise
* @throws DeIdentifierException if there is an error in the de-identification REST API or parsing the JSON
* @throws IllegalArgumentException if the given JSON does not have a 'resource' object
*/
private boolean translateResource(JsonNode resource) {
boolean translatedSomething = false;
String resourceType = getResourceType(resource);
boolean isTranslatable = StringUtils.equalsAny(resourceType, TRANSLATABLE_FHIR_TYPES);
if (!isTranslatable) {
return translatedSomething;
}
ArrayNode extensions = (ArrayNode) resource.get(EXTENSION_OBJECT);
if (extensions == null) {
return translatedSomething;
}
for (int i = 0; i < extensions.size(); i++) {
JsonNode extension = extensions.get(i);
JsonNode urlJson = extension.get(URL_OBJECT);
JsonNode valueCodeJson = extension.get(VALUE_CODE_OBJECT);
if (urlJson == null || valueCodeJson == null) {
// In order to do a translation we need both the url and the valueCode
continue;
}
// The resource's extension URL is the URL for the StructureDefinition, so we resolve a ValueSet if known
String structureDefinitionURL = urlJson.asText();
String valueSetURL = valueSetForStructureDefinition.get(structureDefinitionURL);
// and if known we check the FHIR Server's known ConceptMaps to see if there is a corresponding one
// http://4603f72b-us-south.lb.appdomain.cloud/fhir-server/api/v4/ConceptMap?_format=json&source-uri=http://hl7.org/fhir/us/core/ValueSet/birthsex
Bundle bundle = fhirClient.search().forResource(ConceptMap.class).where(ConceptMap.SOURCE_URI.hasId(valueSetURL)).returnBundle(Bundle.class).execute();
String conceptMapId;
if (!bundle.getEntry().isEmpty()) {
Resource conceptMap = bundle.getEntry().get(0).getResource();
if (bundle.getEntry().size() > 1) {
System.err.println("Found multiple ConceptMaps that will map " + valueSetURL + " for this StructureDefinition, will use the first one " + conceptMap.getId());
} else {
System.out.println("Found ConceptMap for " + valueSetURL + ": " + conceptMap.getId() + " !!");
}
conceptMapId = conceptMap.getIdElement().getIdPart();
} else {
System.out.println("Did not find ConceptMap for " + valueSetURL + "!!");
continue;
}
// "POST ${FHIR_URL}/${conceptMapID}/$translate?code=${code}&system=${valueSet}&_format=json
String valueCode = valueCodeJson.asText();
String url = String.format("%s/ConceptMap/%s/$translate?code=%s&system=%s&_format=json", fhirClient.getServerBase(), conceptMapId, valueCode, valueSetURL);
Parameters translationResponse = fhirClient.fetchResourceFromUrl(Parameters.class, url);
// This is what comes back from the server
// {
// "resourceType": "Parameters",
// "parameter": [
// {
// "name": "result",
// "valueBoolean": true
// },
// {
// "name": "match",
// "part": [
// {
// "name": "equivalence",
// "valueCode": "equivalent"
// },
// {
// "name": "concept",
// "valueCoding": {
// "system": "http://ibm.com/fhir/cdm/ValueSet/sex-assigned-at-birth",
// "code": "male",
// "display": "Male"
// }
// }
// ]
// }
// ]
// }
Coding translatedCode = null;
List<ParametersParameterComponent> parameters = translationResponse.getParameter();
for (ParametersParameterComponent parameter : parameters) {
if (parameter.getName().equals(MATCH_VALUE)) {
List<ParametersParameterComponent> parts = parameter.getPart();
for (ParametersParameterComponent part : parts) {
if (part.getName().equals(CONCEPT_VALUE)) {
try {
translatedCode = (Coding) part.getValue();
} catch (ClassCastException e) {
String jsonResponse = fhirClient.getFhirContext().newJsonParser().encodeResourceToString(translationResponse);
System.err.println("Found a ConceptMap that will map " + valueSetURL + " for this StructureDefinition, but the FHIR server returned an unknown $translate response (expected a 'valueCoding' part): " + jsonResponse);
}
}
}
}
}
if (translatedCode == null) {
String jsonResponse = fhirClient.getFhirContext().newJsonParser().encodeResourceToString(translationResponse);
System.err.println("Found a ConceptMap that will map " + valueSetURL + " for this StructureDefinition, but the FHIR server returned an unknown $translate response: " + jsonResponse);
continue;
}
System.out.printf("Found ConceptMap %s which translates (valueCode, system) = (%s, %s) for StructureDefinition %s to (valueCode, system) = (%s, %s) %n", conceptMapId, valueCode, valueSetURL, structureDefinitionURL, translatedCode.getCode(), translatedCode.getSystem());
String translatedStructuredData = valueSetForStructureDefinition.get(translatedCode.getSystem());
if (translatedStructuredData == null) {
System.err.printf("Cannot find the mapping from ValueSet '%s' to its corresponding StructureData for this translation, make sure the corresponding mappings configuration file has it.%n", translatedCode.getSystem());
continue;
}
((ObjectNode) extension).set(URL_OBJECT, JsonNodeFactory.instance.textNode(translatedStructuredData));
((ObjectNode) extension).set(VALUE_CODE_OBJECT, JsonNodeFactory.instance.textNode(translatedCode.getCode()));
translatedSomething = true;
}
return translatedSomething;
}
use of org.hl7.fhir.r4b.model.Parameters.ParametersParameterComponent in project cqf-ruler by DBCG.
the class CqlExecutionProvider method evaluate.
/**
* Evaluates a CQL expression and returns the results as a Parameters resource.
*
* @param theRequestDetails the {@link RequestDetails RequestDetails}
* @param subject ***Only Patient is supported as of now*** Subject
* for which the expression will be
* evaluated. This corresponds to the context in
* which the expression will be evaluated and is
* represented as a relative FHIR id (e.g.
* Patient/123), which establishes both the context
* and context value for the evaluation
* @param expression Expression to be evaluated. Note that this is an
* expression of CQL, not the text of a library with
* definition statements.
* @param parameters Any input parameters for the expression.
* {@link Parameters} Parameters defined in this
* input will be made available by name to the CQL
* expression. Parameter types are mapped to CQL as
* specified in the Using CQL section of the CPG
* Implementation guide. If a parameter appears more
* than once in the input Parameters resource, it is
* represented with a List in the input CQL. If a
* parameter has parts, it is represented as a Tuple
* in the input CQL.
* @param library A library to be included. The {@link Library}
* library is resolved by url and made available by
* name within the expression to be evaluated.
* @param useServerData Whether to use data from the server performing the
* evaluation. If this parameter is true (the
* default), then the operation will use data first
* from any bundles provided as parameters (through
* the data and prefetch parameters), second data
* from the server performing the operation, and
* third, data from the dataEndpoint parameter (if
* provided). If this parameter is false, the
* operation will use data first from the bundles
* provided in the data or prefetch parameters, and
* second from the dataEndpoint parameter (if
* provided).
* @param data Data to be made available to the library
* evaluation. This parameter is exclusive with the
* prefetchData parameter (i.e. either provide all
* data as a single bundle, or provide data using
* multiple bundles with prefetch descriptions).
* @param prefetchData ***Not Yet Implemented***
* @param dataEndpoint An {@link Endpoint} endpoint to use to access data
* referenced by retrieve operations in the library.
* If provided, this endpoint is used after the data
* or prefetchData bundles, and the server, if the
* useServerData parameter is true.
* @param contentEndpoint An {@link Endpoint} endpoint to use to access
* content (i.e. libraries) referenced by the
* library. If no content endpoint is supplied, the
* evaluation will attempt to retrieve content from
* the server on which the operation is being
* performed.
* @param terminologyEndpoint An {@link Endpoint} endpoint to use to access
* terminology (i.e. valuesets, codesystems, and
* membership testing) referenced by the library. If
* no terminology endpoint is supplied, the
* evaluation will attempt to use the server on which
* the operation is being performed as the
* terminology server.
* @return The result of evaluating the given expression, returned as a FHIR
* type, either a {@link Resource} resource, or a FHIR-defined type
* corresponding to the CQL return type, as defined in the Using CQL
* section of the CPG Implementation guide. If the result is a List of
* resources, the result will be a {@link Bundle} Bundle . If the result
* is a CQL system-defined or FHIR-defined type, the result is returned
* as a {@link Parameters} Parameters resource
*/
@Operation(name = "$cql")
@Description(shortDefinition = "$cql", value = "Evaluates a CQL expression and returns the results as a Parameters resource. Defined: http://build.fhir.org/ig/HL7/cqf-recommendations/OperationDefinition-cpg-cql.html", example = "$cql?expression=5*5")
public Parameters evaluate(RequestDetails theRequestDetails, @OperationParam(name = "subject", max = 1) String subject, @OperationParam(name = "expression", min = 1, max = 1) String expression, @OperationParam(name = "parameters", max = 1) Parameters parameters, @OperationParam(name = "library") List<Parameters> library, @OperationParam(name = "useServerData", max = 1) BooleanType useServerData, @OperationParam(name = "data", max = 1) Bundle data, @OperationParam(name = "prefetchData") List<Parameters> prefetchData, @OperationParam(name = "dataEndpoint", max = 1) Endpoint dataEndpoint, @OperationParam(name = "contentEndpoint", max = 1) Endpoint contentEndpoint, @OperationParam(name = "terminologyEndpoint", max = 1) Endpoint terminologyEndpoint) {
if (prefetchData != null) {
throw new NotImplementedException("prefetchData is not yet supported.");
}
if (useServerData == null) {
useServerData = new BooleanType(true);
}
List<LibraryParameter> libraryParameters = new ArrayList<>();
if (library != null) {
for (Parameters libraryParameter : library) {
String url = null;
String name = null;
for (ParametersParameterComponent param : libraryParameter.getParameter()) {
switch(param.getName()) {
case "url":
url = ((StringType) param.getValue()).asStringValue();
break;
case "name":
name = ((StringType) param.getValue()).asStringValue();
break;
default:
throw new IllegalArgumentException("Only url and name parts are allowed for Parameter: library");
}
}
if (url == null) {
throw new IllegalArgumentException("If library parameter must provide a url parameter part.");
}
libraryParameters.add(new LibraryParameter().withUrl(url).withName(name));
}
// Remove LocalLibrary from cache first...
}
VersionedIdentifier localLibraryIdentifier = new VersionedIdentifier().withId("LocalLibrary").withVersion("1.0.0");
globalLibraryCache.remove(localLibraryIdentifier);
CqlEngine engine = setupEngine(localLibraryIdentifier, expression, libraryParameters, subject, parameters, contentEndpoint, dataEndpoint, terminologyEndpoint, data, useServerData.booleanValue(), theRequestDetails);
Map<String, Object> resolvedParameters = new HashMap<String, Object>();
if (parameters != null) {
for (Parameters.ParametersParameterComponent pc : parameters.getParameter()) {
resolvedParameters.put(pc.getName(), pc.getValue());
}
}
String contextType = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
String subjectId = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
EvaluationResult evalResult = engine.evaluate(localLibraryIdentifier, null, Pair.of(contextType != null ? contextType : "Unspecified", subjectId == null ? "null" : subject), resolvedParameters, this.getDebugMap());
if (evalResult != null && evalResult.expressionResults != null) {
if (evalResult.expressionResults.size() > 1) {
logger.debug("Evaluation resulted in more than one expression result. ");
}
Parameters result = new Parameters();
resolveResult(theRequestDetails, evalResult, result);
return result;
}
return null;
}
use of org.hl7.fhir.r4b.model.Parameters.ParametersParameterComponent in project cqf-ruler by DBCG.
the class CqlExecutionProvider method evaluate.
/**
* Evaluates a CQL expression and returns the results as a Parameters resource.
*
* @param theRequestDetails the {@link RequestDetails RequestDetails}
* @param subject Subject for which the expression will be
* evaluated. This corresponds to the context in
* which the expression will be evaluated and is
* represented as a relative FHIR id (e.g.
* Patient/123), which establishes both the context
* and context value for the evaluation
* @param expression Expression to be evaluated. Note that this is an
* expression of CQL, not the text of a library with
* definition statements.
* @param parameters Any input parameters for the expression.
* {@link Parameters} Parameters defined in this
* input will be made available by name to the CQL
* expression. Parameter types are mapped to CQL as
* specified in the Using CQL section of the CPG
* Implementation guide. If a parameter appears more
* than once in the input Parameters resource, it is
* represented with a List in the input CQL. If a
* parameter has parts, it is represented as a Tuple
* in the input CQL.
* @param library A library to be included. The {@link Library}
* library is resolved by url and made available by
* name within the expression to be evaluated.
* @param useServerData Whether to use data from the server performing the
* evaluation. If this parameter is true (the
* default), then the operation will use data first
* from any bundles provided as parameters (through
* the data and prefetch parameters), second data
* from the server performing the operation, and
* third, data from the dataEndpoint parameter (if
* provided). If this parameter is false, the
* operation will use data first from the bundles
* provided in the data or prefetch parameters, and
* second from the dataEndpoint parameter (if
* provided).
* @param data Data to be made available to the library
* evaluation. This parameter is exclusive with the
* prefetchData parameter (i.e. either provide all
* data as a single bundle, or provide data using
* multiple bundles with prefetch descriptions).
* @param prefetchData ***Not Yet Implemented***
* @param dataEndpoint An {@link Endpoint} endpoint to use to access data
* referenced by retrieve operations in the library.
* If provided, this endpoint is used after the data
* or prefetchData bundles, and the server, if the
* useServerData parameter is true.
* @param contentEndpoint An {@link Endpoint} endpoint to use to access
* content (i.e. libraries) referenced by the
* library. If no content endpoint is supplied, the
* evaluation will attempt to retrieve content from
* the server on which the operation is being
* performed.
* @param terminologyEndpoint An {@link Endpoint} endpoint to use to access
* terminology (i.e. valuesets, codesystems, and
* membership testing) referenced by the library. If
* no terminology endpoint is supplied, the
* evaluation will attempt to use the server on which
* the operation is being performed as the
* terminology server.
* @return The result of evaluating the given expression, returned as a FHIR
* type, either a {@link Resource} resource, or a FHIR-defined type
* corresponding to the CQL return type, as defined in the Using CQL
* section of the CPG Implementation guide. If the result is a List of
* resources, the result will be a {@link Bundle} Bundle . If the result
* is a CQL system-defined or FHIR-defined type, the result is returned
* as a {@link Parameters} Parameters resource
*/
@Operation(name = "$cql")
@Description(shortDefinition = "$cql", value = "Evaluates a CQL expression and returns the results as a Parameters resource. Defined: http://build.fhir.org/ig/HL7/cqf-recommendations/OperationDefinition-cpg-cql.html", example = "$cql?expression=5*5")
public Parameters evaluate(RequestDetails theRequestDetails, @OperationParam(name = "subject", max = 1) String subject, @OperationParam(name = "expression", min = 1, max = 1) String expression, @OperationParam(name = "parameters", max = 1) Parameters parameters, @OperationParam(name = "library") List<Parameters> library, @OperationParam(name = "useServerData", max = 1) BooleanType useServerData, @OperationParam(name = "data", max = 1) Bundle data, @OperationParam(name = "prefetchData") List<Parameters> prefetchData, @OperationParam(name = "dataEndpoint", max = 1) Endpoint dataEndpoint, @OperationParam(name = "contentEndpoint", max = 1) Endpoint contentEndpoint, @OperationParam(name = "terminologyEndpoint", max = 1) Endpoint terminologyEndpoint) {
if (prefetchData != null) {
throw new NotImplementedException("prefetchData is not yet supported.");
}
if (useServerData == null) {
useServerData = new BooleanType(true);
}
List<LibraryParameter> libraryParameters = new ArrayList<>();
if (library != null) {
for (Parameters libraryParameter : library) {
CanonicalType url = null;
String name = null;
for (ParametersParameterComponent param : libraryParameter.getParameter()) {
switch(param.getName()) {
case "url":
url = ((CanonicalType) param.getValue());
break;
case "name":
name = ((StringType) param.getValue()).asStringValue();
break;
default:
throw new IllegalArgumentException("Only url and name parts are allowed for Parameter: library");
}
}
if (url == null) {
throw new IllegalArgumentException("If library parameter must provide a url parameter part.");
}
libraryParameters.add(new LibraryParameter().withUrl(url).withName(name));
}
// Remove LocalLibrary from cache first...
}
VersionedIdentifier localLibraryIdentifier = new VersionedIdentifier().withId("LocalLibrary").withVersion("1.0.0");
globalLibraryCache.remove(localLibraryIdentifier);
CqlEngine engine = setupEngine(localLibraryIdentifier, expression, libraryParameters, subject, parameters, contentEndpoint, dataEndpoint, terminologyEndpoint, data, useServerData.booleanValue(), theRequestDetails);
Map<String, Object> resolvedParameters = new HashMap<>();
if (parameters != null) {
for (Parameters.ParametersParameterComponent pc : parameters.getParameter()) {
resolvedParameters.put(pc.getName(), pc.getValue());
}
}
String contextType = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
String subjectId = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
EvaluationResult evalResult = engine.evaluate(localLibraryIdentifier, null, Pair.of(contextType != null ? contextType : "Unspecified", subjectId == null ? "null" : subject), resolvedParameters, this.getDebugMap());
if (evalResult != null && evalResult.expressionResults != null) {
if (evalResult.expressionResults.size() > 1) {
logger.debug("Evaluation resulted in more than one expression result. ");
}
Parameters result = new Parameters();
resolveResult(theRequestDetails, evalResult, result);
return result;
}
return null;
}
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