Examples with FhirEncoders au.csiro.pathling.encoders.FhirEncoders used on opensource projects

Example 1 with FhirEncoders

use of au.csiro.pathling.encoders.FhirEncoders in project pathling by aehrc.

the class ManifestConverterTest method convertsManifest.

@Test
void convertsManifest() {
    database = new Database(configuration, spark, fhirEncoders, executor);
    final PassportScope passportScope = new PassportScope();
    final VisaManifest manifest = new VisaManifest();
    manifest.setPatientIds(Arrays.asList(PATIENT_ID_1, PATIENT_ID_2, PATIENT_ID_3, PATIENT_ID_4));
    final ManifestConverter manifestConverter = new ManifestConverter(configuration, fhirContext);
    manifestConverter.populateScope(passportScope, manifest);
    // Convert the scope to JSON and compare it to a test fixture.
    final Gson gson = new GsonBuilder().create();
    final String json = gson.toJson(passportScope);
    assertJson("responses/ManifestConverterTest/convertsManifest.json", json);
    // our test patients.
    for (final ResourceType resourceType : passportScope.keySet()) {
        if (AVAILABLE_RESOURCE_TYPES.contains(resourceType)) {
            boolean found = false;
            for (final String filter : passportScope.get(resourceType)) {
                final Dataset<Row> dataset = assertThatResultOf(resourceType, filter).isElementPath(BooleanPath.class).selectResult().apply(result -> result.filter(result.columns()[1])).getDataset();
                if (dataset.count() > 0) {
                    found = true;
                }
            }
            assertTrue(found, "No results found for " + resourceType.toCode());
        }
    }
}

Example 2 with FhirEncoders

use of au.csiro.pathling.encoders.FhirEncoders in project pathling by aehrc.

the class AggregateExecutorTest method runFirstGroupingThroughSearch.

/**
 * Test that the drill-down expression from the first grouping from each aggregate result can be
 * successfully executed using the FHIRPath search.
 */
@AfterEach
void runFirstGroupingThroughSearch() {
    if (response != null) {
        final Optional<Grouping> firstGroupingOptional = response.getGroupings().stream().filter(grouping -> grouping.getDrillDown().isPresent()).findFirst();
        if (firstGroupingOptional.isPresent()) {
            final Grouping firstGrouping = firstGroupingOptional.get();
            assertTrue(firstGrouping.getDrillDown().isPresent());
            final String drillDown = firstGrouping.getDrillDown().get();
            final StringAndListParam filters = new StringAndListParam();
            filters.addAnd(new StringParam(drillDown));
            final IBundleProvider searchExecutor = new SearchExecutor(configuration, fhirContext, spark, database, Optional.of(terminologyServiceFactory), fhirEncoders, subjectResource, Optional.of(filters));
            final List<IBaseResource> resources = searchExecutor.getResources(0, 100);
            assertTrue(resources.size() > 0);
        }
    }
}