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Example 11 with org.hl7.fhir.r5.utils.validation

use of org.hl7.fhir.r5.utils.validation in project beneficiary-fhir-data by CMSgov.

the class EndpointJsonResponseComparatorV2IT method patientRead.

/**
 * @return the results of the {@link
 *     R4PatientResourceProvider#read(org.hl7.fhir.dstu3.model.IdType)} operation
 */
public static String patientRead() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    IGenericClient fhirClient = createFhirClientAndSetEncoding();
    JsonInterceptor jsonInterceptor = createAndRegisterJsonInterceptor(fhirClient);
    fhirClient.read().resource(Patient.class).withId(beneficiary.getBeneficiaryId()).execute();
    return sortPatientIdentifiers(jsonInterceptor.getResponse());
}
Also used : Arrays(java.util.Arrays) R4PatientResourceProvider(gov.cms.bfd.server.war.r4.providers.R4PatientResourceProvider) InpatientClaim(gov.cms.bfd.model.rif.InpatientClaim) Disabled(org.junit.jupiter.api.Disabled) PartDEvent(gov.cms.bfd.model.rif.PartDEvent) SNFClaim(gov.cms.bfd.model.rif.SNFClaim) TransformerUtilsV2(gov.cms.bfd.server.war.r4.providers.TransformerUtilsV2) Matcher(java.util.regex.Matcher) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) BeforeAll(org.junit.jupiter.api.BeforeAll) JsonNode(com.fasterxml.jackson.databind.JsonNode) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Path(java.nio.file.Path) Coverage(org.hl7.fhir.r4.model.Coverage) Patient(org.hl7.fhir.r4.model.Patient) MethodSource(org.junit.jupiter.params.provider.MethodSource) OutpatientClaim(gov.cms.bfd.model.rif.OutpatientClaim) ImmutableSet(com.google.common.collect.ImmutableSet) MedicareSegment(gov.cms.bfd.server.war.commons.MedicareSegment) Set(java.util.Set) Arguments(org.junit.jupiter.params.provider.Arguments) Collectors(java.util.stream.Collectors) ExplanationOfBenefitResourceProvider(gov.cms.bfd.server.war.stu3.providers.ExplanationOfBenefitResourceProvider) StandardCharsets(java.nio.charset.StandardCharsets) ArrayNode(com.fasterxml.jackson.databind.node.ArrayNode) UncheckedIOException(java.io.UncheckedIOException) JsonArray(com.google.gson.JsonArray) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) CarrierClaim(gov.cms.bfd.model.rif.CarrierClaim) Optional(java.util.Optional) Pattern(java.util.regex.Pattern) ClaimTypeV2(gov.cms.bfd.server.war.r4.providers.ClaimTypeV2) ExtraParamsInterceptor(gov.cms.bfd.server.war.stu3.providers.ExtraParamsInterceptor) CoverageResourceProvider(gov.cms.bfd.server.war.stu3.providers.CoverageResourceProvider) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) Supplier(java.util.function.Supplier) ObjectNode(com.fasterxml.jackson.databind.node.ObjectNode) ArrayList(java.util.ArrayList) HHAClaim(gov.cms.bfd.model.rif.HHAClaim) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) Lists(com.google.common.collect.Lists) OutputStreamWriter(java.io.OutputStreamWriter) DMEClaim(gov.cms.bfd.model.rif.DMEClaim) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) Arguments.arguments(org.junit.jupiter.params.provider.Arguments.arguments) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) Iterator(java.util.Iterator) Files(java.nio.file.Files) HospiceClaim(gov.cms.bfd.model.rif.HospiceClaim) ObjectMapper(com.fasterxml.jackson.databind.ObjectMapper) FileOutputStream(java.io.FileOutputStream) JsonProcessingException(com.fasterxml.jackson.core.JsonProcessingException) IOException(java.io.IOException) EncodingEnum(ca.uhn.fhir.rest.api.EncodingEnum) File(java.io.File) Consumer(java.util.function.Consumer) AfterEach(org.junit.jupiter.api.AfterEach) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest) Paths(java.nio.file.Paths) ExplanationOfBenefit(org.hl7.fhir.r4.model.ExplanationOfBenefit) Bundle(org.hl7.fhir.r4.model.Bundle) Comparator(java.util.Comparator) Collections(java.util.Collections) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Beneficiary(gov.cms.bfd.model.rif.Beneficiary)

Example 12 with org.hl7.fhir.r5.utils.validation

use of org.hl7.fhir.r5.utils.validation in project beneficiary-fhir-data by CMSgov.

the class EndpointJsonResponseComparatorIT method eobReadDmeWithTaxNumbers.

/**
 * @return the results of the {@link
 *     ExplanationOfBenefitResourceProvider#read(org.hl7.fhir.dstu3.model.IdType)} operation for
 *     DME claims, with the {@link
 *     ExplanationOfBenefitResourceProvider#HEADER_NAME_INCLUDE_TAX_NUMBERS} set to <code>true
 *     </code>
 */
public static String eobReadDmeWithTaxNumbers() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = createFhirClientAndSetEncoding();
    RequestHeaders requestHeader = RequestHeaders.getHeaderWrapper(CommonHeaders.HEADER_NAME_INCLUDE_TAX_NUMBERS, "true");
    ExtraParamsInterceptor extraParamsInterceptor = new ExtraParamsInterceptor();
    extraParamsInterceptor.setHeaders(requestHeader);
    fhirClient.registerInterceptor(extraParamsInterceptor);
    JsonInterceptor jsonInterceptor = createAndRegisterJsonInterceptor(fhirClient);
    DMEClaim dmeClaim = loadedRecords.stream().filter(r -> r instanceof DMEClaim).map(r -> (DMEClaim) r).findFirst().get();
    fhirClient.read().resource(ExplanationOfBenefit.class).withId(TransformerUtils.buildEobId(ClaimType.DME, dmeClaim.getClaimId())).execute();
    return jsonInterceptor.getResponse();
}
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Example 13 with org.hl7.fhir.r5.utils.validation

use of org.hl7.fhir.r5.utils.validation in project beneficiary-fhir-data by CMSgov.

the class EndpointJsonResponseComparatorIT method eobReadHospice.

/**
 * @return the results of the {@link
 *     ExplanationOfBenefitResourceProvider#read(org.hl7.fhir.dstu3.model.IdType)} operation for
 *     Hospice claims
 */
public static String eobReadHospice() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = createFhirClientAndSetEncoding();
    JsonInterceptor jsonInterceptor = createAndRegisterJsonInterceptor(fhirClient);
    HospiceClaim hosClaim = loadedRecords.stream().filter(r -> r instanceof HospiceClaim).map(r -> (HospiceClaim) r).findFirst().get();
    fhirClient.read().resource(ExplanationOfBenefit.class).withId(TransformerUtils.buildEobId(ClaimType.HOSPICE, hosClaim.getClaimId())).execute();
    return jsonInterceptor.getResponse();
}
Also used : Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) InpatientClaim(gov.cms.bfd.model.rif.InpatientClaim) Disabled(org.junit.jupiter.api.Disabled) PartDEvent(gov.cms.bfd.model.rif.PartDEvent) SNFClaim(gov.cms.bfd.model.rif.SNFClaim) Matcher(java.util.regex.Matcher) BeforeAll(org.junit.jupiter.api.BeforeAll) JsonNode(com.fasterxml.jackson.databind.JsonNode) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Path(java.nio.file.Path) MethodSource(org.junit.jupiter.params.provider.MethodSource) OutpatientClaim(gov.cms.bfd.model.rif.OutpatientClaim) Coverage(org.hl7.fhir.dstu3.model.Coverage) ImmutableSet(com.google.common.collect.ImmutableSet) ExplanationOfBenefit(org.hl7.fhir.dstu3.model.ExplanationOfBenefit) MedicareSegment(gov.cms.bfd.server.war.commons.MedicareSegment) Set(java.util.Set) Arguments(org.junit.jupiter.params.provider.Arguments) Collectors(java.util.stream.Collectors) ExplanationOfBenefitResourceProvider(gov.cms.bfd.server.war.stu3.providers.ExplanationOfBenefitResourceProvider) StandardCharsets(java.nio.charset.StandardCharsets) ArrayNode(com.fasterxml.jackson.databind.node.ArrayNode) UncheckedIOException(java.io.UncheckedIOException) JsonArray(com.google.gson.JsonArray) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) CapabilityStatement(org.hl7.fhir.dstu3.model.CapabilityStatement) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) CarrierClaim(gov.cms.bfd.model.rif.CarrierClaim) Optional(java.util.Optional) Pattern(java.util.regex.Pattern) TransformerUtils(gov.cms.bfd.server.war.stu3.providers.TransformerUtils) ExtraParamsInterceptor(gov.cms.bfd.server.war.stu3.providers.ExtraParamsInterceptor) CoverageResourceProvider(gov.cms.bfd.server.war.stu3.providers.CoverageResourceProvider) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) ClaimType(gov.cms.bfd.server.war.stu3.providers.ClaimType) Supplier(java.util.function.Supplier) ObjectNode(com.fasterxml.jackson.databind.node.ObjectNode) ArrayList(java.util.ArrayList) HHAClaim(gov.cms.bfd.model.rif.HHAClaim) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) OutputStreamWriter(java.io.OutputStreamWriter) DMEClaim(gov.cms.bfd.model.rif.DMEClaim) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) Arguments.arguments(org.junit.jupiter.params.provider.Arguments.arguments) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) PatientResourceProvider(gov.cms.bfd.server.war.stu3.providers.PatientResourceProvider) Iterator(java.util.Iterator) Files(java.nio.file.Files) HospiceClaim(gov.cms.bfd.model.rif.HospiceClaim) ObjectMapper(com.fasterxml.jackson.databind.ObjectMapper) FileOutputStream(java.io.FileOutputStream) JsonProcessingException(com.fasterxml.jackson.core.JsonProcessingException) IOException(java.io.IOException) EncodingEnum(ca.uhn.fhir.rest.api.EncodingEnum) File(java.io.File) Consumer(java.util.function.Consumer) AfterEach(org.junit.jupiter.api.AfterEach) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest) Paths(java.nio.file.Paths) Patient(org.hl7.fhir.dstu3.model.Patient) Comparator(java.util.Comparator) Collections(java.util.Collections) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) HospiceClaim(gov.cms.bfd.model.rif.HospiceClaim)

Example 14 with org.hl7.fhir.r5.utils.validation

use of org.hl7.fhir.r5.utils.validation in project beneficiary-fhir-data by CMSgov.

the class TransformerUtilsTest method createCodeableConcept_display.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.TransformerUtils#createCodeableConcept(org.hl7.fhir.instance.model.api.IAnyResource,
 * CcwCodebookVariable, String)} sets {@link Coding#getDisplay()} correctly.
 */
@Test
public void createCodeableConcept_display() {
    Patient patientA = new Patient();
    patientA.setId("12345");
    CodeableConcept raceConcept_4 = TransformerUtils.createCodeableConcept(patientA, CcwCodebookVariable.RACE, "4");
    assertEquals("Asian", raceConcept_4.getCodingFirstRep().getDisplay());
    // This code isn't valid and shouldn't end up with a matching display.
    CodeableConcept raceConcept_12 = TransformerUtils.createCodeableConcept(patientA, CcwCodebookVariable.RACE, "12");
    assertNull(raceConcept_12.getCodingFirstRep().getDisplay());
    /*
     * The REV_CNTR_PMT_MTHD_IND_CD Variable has value collisions. Verify that those
     * are handled correctly.
     */
    CodeableConcept paymentMethodConcept_1 = TransformerUtils.createCodeableConcept(patientA, CcwCodebookVariable.REV_CNTR_PMT_MTHD_IND_CD, "1");
    assertNull(paymentMethodConcept_1.getCodingFirstRep().getDisplay());
}
Also used : Patient(org.hl7.fhir.dstu3.model.Patient) CodeableConcept(org.hl7.fhir.dstu3.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 15 with org.hl7.fhir.r5.utils.validation

use of org.hl7.fhir.r5.utils.validation in project beneficiary-fhir-data by CMSgov.

the class PatientResourceProviderIT method readExistingPatientWithNoHistoryIncludeIdentifiersTrue.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.PatientResourceProvider#read(org.hl7.fhir.dstu3.model.IdType)}
 * works as expected for a {@link Patient} that does exist in the DB but has no {@link
 * BeneficiaryHistory} or {@link MedicareBeneficiaryIdHistory} records when include identifiers
 * value = ["true"].
 */
@Test
public void readExistingPatientWithNoHistoryIncludeIdentifiersTrue() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResource.SAMPLE_A_BENES));
    RequestHeaders requestHeader = RequestHeaders.getHeaderWrapper(PatientResourceProvider.HEADER_NAME_INCLUDE_IDENTIFIERS, "true", PatientResourceProvider.HEADER_NAME_INCLUDE_ADDRESS_FIELDS, "true");
    IGenericClient fhirClient = createFhirClient(requestHeader);
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Patient patient = fhirClient.read().resource(Patient.class).withId(beneficiary.getBeneficiaryId()).execute();
    assertNotNull(patient);
    BeneficiaryTransformerTest.assertMatches(beneficiary, patient, requestHeader);
    /*
     * Ensure the unhashed values for HICN and MBI are present.
     */
    Boolean hicnUnhashedPresent = false;
    Boolean mbiUnhashedPresent = false;
    Iterator<Identifier> identifiers = patient.getIdentifier().iterator();
    while (identifiers.hasNext()) {
        Identifier identifier = identifiers.next();
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_BENE_HICN_UNHASHED))
            hicnUnhashedPresent = true;
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_MEDICARE_BENEFICIARY_ID_UNHASHED))
            mbiUnhashedPresent = true;
    }
    assertTrue(hicnUnhashedPresent);
    assertTrue(mbiUnhashedPresent);
}
Also used : Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.fail(org.junit.jupiter.api.Assertions.fail) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Date(java.util.Date) Identifier(org.hl7.fhir.dstu3.model.Identifier) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) Constants(ca.uhn.fhir.rest.api.Constants) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) Assertions.assertFalse(org.junit.jupiter.api.Assertions.assertFalse) CriteriaUpdate(javax.persistence.criteria.CriteriaUpdate) BeforeAll(org.junit.jupiter.api.BeforeAll) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) Root(javax.persistence.criteria.Root) CriteriaQuery(javax.persistence.criteria.CriteriaQuery) Iterator(java.util.Iterator) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) BeneficiaryMonthly_(gov.cms.bfd.model.rif.BeneficiaryMonthly_) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) BeneficiaryMonthly(gov.cms.bfd.model.rif.BeneficiaryMonthly) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) AfterEach(org.junit.jupiter.api.AfterEach) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) Year(java.time.Year) Patient(org.hl7.fhir.dstu3.model.Patient) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) LocalDate(java.time.LocalDate) Identifier(org.hl7.fhir.dstu3.model.Identifier) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Patient(org.hl7.fhir.dstu3.model.Patient) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Aggregations

Test (org.junit.jupiter.api.Test)427 Turtle (org.hl7.fhir.dstu3.utils.formats.Turtle)334 Test (org.junit.Test)241 FHIRException (org.hl7.fhir.exceptions.FHIRException)104 ArrayList (java.util.ArrayList)101 IOException (java.io.IOException)78 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)70 Date (java.util.Date)65 List (java.util.List)64 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)61 FileOutputStream (java.io.FileOutputStream)59 CodeableReference (org.hl7.fhir.r5.model.CodeableReference)58 File (java.io.File)57 InputStream (java.io.InputStream)51 ParameterizedTest (org.junit.jupiter.params.ParameterizedTest)50 IBundleProvider (ca.uhn.fhir.rest.api.server.IBundleProvider)48 Bundle (org.hl7.fhir.dstu3.model.Bundle)48 MethodSource (org.junit.jupiter.params.provider.MethodSource)46 Arrays (java.util.Arrays)45 Collectors (java.util.stream.Collectors)45