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Example 46 with Argument

use of org.hl7.fhir.utilities.graphql.Argument in project org.hl7.fhir.core by hapifhir.

the class GraphDefinitionEngine method processLinkTarget.

private void processLinkTarget(String focusPath, Resource focus, GraphDefinitionLinkComponent link, int depth) {
    check(link.getTarget().size() == 1, "If there is no path, there must be one and only one target at " + focusPath);
    check(link.getTarget().get(0).hasType(), "If there is no path, there must be type on the target at " + focusPath);
    check(link.getTarget().get(0).getParams().contains("{ref}"), "If there is no path, the target must have parameters that include a parameter using {ref} at " + focusPath);
    String path = focusPath + " -> " + link.getTarget().get(0).getType() + "?" + link.getTarget().get(0).getParams();
    List<IBaseResource> list = new ArrayList<>();
    List<Argument> params = new ArrayList<>();
    parseParams(params, link.getTarget().get(0).getParams(), focus);
    services.listResources(appInfo, link.getTarget().get(0).getType(), params, list);
    check(!validating || (list.size() >= (link.hasMin() ? link.getMin() : 0)), "Link at path " + path + " requires at least " + link.getMin() + " matches, but only found " + list.size());
    check(!validating || (list.size() <= (link.hasMax() && !link.getMax().equals("*") ? Integer.parseInt(link.getMax()) : Integer.MAX_VALUE)), "Link at path " + path + " requires at most " + link.getMax() + " matches, but found " + list.size());
    for (IBaseResource res : list) {
        Resource r = (Resource) res;
        if (!isInBundle(r)) {
            addToBundle(r);
            // Grahame Grieve 17-06-2020: this seems wrong to me - why restart?
            for (GraphDefinitionLinkComponent l : graphDefinition.getLink()) {
                processLink(start.fhirType(), start, l, depth + 1);
            }
        }
    }
}
Also used : GraphDefinitionLinkComponent(org.hl7.fhir.r5.model.GraphDefinition.GraphDefinitionLinkComponent) Argument(org.hl7.fhir.utilities.graphql.Argument) ArrayList(java.util.ArrayList) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) Resource(org.hl7.fhir.r5.model.Resource) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource)

Example 47 with Argument

use of org.hl7.fhir.utilities.graphql.Argument in project org.hl7.fhir.core by hapifhir.

the class GraphQLEngine method processCanonicalReference.

private void processCanonicalReference(Resource context, Base source, Field field, ObjectValue target, boolean inheritedList, String suffix) throws EGraphQLException, FHIRException {
    if (services == null)
        throw new EGraphQLException("Resource Referencing services not provided");
    Reference ref = new Reference(source.primitiveValue());
    ReferenceResolution res = services.lookup(appInfo, context, ref);
    if (res != null) {
        if (targetTypeOk(field.getArguments(), res.getTarget())) {
            Argument arg = target.addField(field.getAlias() + suffix, listStatus(field, inheritedList));
            ObjectValue obj = new ObjectValue();
            arg.addValue(obj);
            processObject((Resource) res.getTargetContext(), (Base) res.getTarget(), obj, field.getSelectionSet(), inheritedList, suffix);
        }
    } else if (!hasArgument(field.getArguments(), "optional", "true"))
        throw new EGraphQLException("Unable to resolve reference to " + ref.getReference());
}
Also used : ReferenceResolution(org.hl7.fhir.utilities.graphql.IGraphQLStorageServices.ReferenceResolution)

Example 48 with Argument

use of org.hl7.fhir.utilities.graphql.Argument in project org.hl7.fhir.core by hapifhir.

the class GraphQLEngine method filterResources.

private List<Resource> filterResources(Argument fhirpath, Bundle bnd) throws EGraphQLException, FHIRException {
    List<Resource> result = new ArrayList<Resource>();
    if (bnd.getEntry().size() > 0) {
        if ((fhirpath == null))
            for (BundleEntryComponent be : bnd.getEntry()) result.add(be.getResource());
        else {
            FHIRPathEngine fpe = new FHIRPathEngine(context);
            ExpressionNode node = fpe.parse(getSingleValue(fhirpath));
            for (BundleEntryComponent be : bnd.getEntry()) if (fpe.evaluateToBoolean(null, be.getResource(), be.getResource(), node))
                result.add(be.getResource());
        }
    }
    return result;
}
Also used : BundleEntryComponent(org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) ArrayList(java.util.ArrayList)

Example 49 with Argument

use of org.hl7.fhir.utilities.graphql.Argument in project org.hl7.fhir.core by hapifhir.

the class GraphQLEngine method processReverseReferenceList.

private void processReverseReferenceList(Resource source, Field field, ObjectValue target, boolean inheritedList, String suffix) throws EGraphQLException, FHIRException {
    if (services == null)
        throw new EGraphQLException("Resource Referencing services not provided");
    List<IBaseResource> list = new ArrayList<>();
    List<Argument> params = new ArrayList<>();
    Argument parg = null;
    for (Argument a : field.getArguments()) if (!(a.getName().equals("_reference")))
        params.add(a);
    else if ((parg == null))
        parg = a;
    else
        throw new EGraphQLException("Duplicate parameter _reference");
    if (parg == null)
        throw new EGraphQLException("Missing parameter _reference");
    Argument arg = new Argument();
    params.add(arg);
    arg.setName(getSingleValue(parg));
    arg.addValue(new StringValue(source.fhirType() + "/" + source.getIdPart()));
    services.listResources(appInfo, field.getName().substring(0, field.getName().length() - 4), params, list);
    arg = null;
    ObjectValue obj = null;
    List<Resource> vl = filterResources(field.argument("fhirpath"), list);
    if (!vl.isEmpty()) {
        arg = target.addField(field.getAlias() + suffix, listStatus(field, true));
        for (Resource v : vl) {
            obj = new ObjectValue();
            arg.addValue(obj);
            processObject(v, v, obj, field.getSelectionSet(), inheritedList, suffix);
        }
    }
}
Also used : ArrayList(java.util.ArrayList) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource)

Example 50 with Argument

use of org.hl7.fhir.utilities.graphql.Argument in project org.hl7.fhir.core by hapifhir.

the class GraphQLEngine method processCanonicalReference.

private void processCanonicalReference(Resource context, Base source, Field field, ObjectValue target, boolean inheritedList, String suffix) throws EGraphQLException, FHIRException {
    if (!(source instanceof CanonicalType))
        throw new EGraphQLException("Not done yet");
    if (services == null)
        throw new EGraphQLException("Resource Referencing services not provided");
    Reference ref = new Reference(source.primitiveValue());
    ReferenceResolution res = services.lookup(appInfo, context, ref);
    if (res != null) {
        if (targetTypeOk(field.getArguments(), res.getTarget())) {
            Argument arg = target.addField(field.getAlias() + suffix, listStatus(field, inheritedList));
            ObjectValue obj = new ObjectValue();
            arg.addValue(obj);
            processObject((Resource) res.getTargetContext(), (Base) res.getTarget(), obj, field.getSelectionSet(), inheritedList, suffix);
        }
    } else if (!hasArgument(field.getArguments(), "optional", "true"))
        throw new EGraphQLException("Unable to resolve reference to " + ref.getReference());
}
Also used : ReferenceResolution(org.hl7.fhir.utilities.graphql.IGraphQLStorageServices.ReferenceResolution)

Aggregations

Argument (org.hl7.fhir.utilities.graphql.Argument)24 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)22 ArrayList (java.util.ArrayList)21 EGraphQLException (org.hl7.fhir.utilities.graphql.EGraphQLException)20 ObjectValue (org.hl7.fhir.utilities.graphql.ObjectValue)20 StringValue (org.hl7.fhir.utilities.graphql.StringValue)16 FHIRException (org.hl7.fhir.exceptions.FHIRException)8 ReferenceResolution (org.hl7.fhir.utilities.graphql.IGraphQLStorageServices.ReferenceResolution)8 IOException (java.io.IOException)7 List (java.util.List)6 Resource (org.hl7.fhir.r4b.model.Resource)6 NameValue (org.hl7.fhir.utilities.graphql.NameValue)6 NumberValue (org.hl7.fhir.utilities.graphql.NumberValue)6 DomainResource (org.hl7.fhir.r4b.model.DomainResource)5 Nonnull (javax.annotation.Nonnull)4 ParserConfigurationException (javax.xml.parsers.ParserConfigurationException)4 Row (org.apache.spark.sql.Row)4 SAXException (org.xml.sax.SAXException)4 FhirPath (au.csiro.pathling.fhirpath.FhirPath)3 NonLiteralPath (au.csiro.pathling.fhirpath.NonLiteralPath)3