Examples with Source org.hl7.fhir.utilities.validation.ValidationMessage.Source used on opensource projects

Example 31 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project BridgeServer2 by Sage-Bionetworks.

the class CRCControllerTest method createPatient.

@Test
public void createPatient() {
    account.setId("userId");
    account.setFirstName("Test");
    account.setLastName("User");
    account.setEmail(EMAIL);
    account.setEmailVerified(true);
    account.setPhone(PHONE);
    account.setPhoneVerified(true);
    account.setAttributes(new ImmutableMap.Builder<String, String>().put("address1", "123 Sesame Street").put("address2", "Apt. 6").put("city", "Seattle").put("dob", "1980-08-10").put("gender", "female").put("state", "WA").put("zip_code", "10001").put("home_phone", PHONE.getNumber()).build());
    Patient patient = controller.createPatient(account);
    assertTrue(patient.getActive());
    assertEquals(patient.getIdentifier().get(0).getValue(), TEST_USER_ID);
    assertEquals(patient.getIdentifier().get(0).getSystem(), USER_ID_VALUE_NS);
    assertEquals(patient.getName().get(0).getGivenAsSingleString(), "Test");
    assertEquals(patient.getName().get(0).getFamily(), "User");
    assertEquals(patient.getMeta().getTag().get(0).getSystem(), "source");
    assertEquals(patient.getMeta().getTag().get(0).getCode(), "sage");
    assertEquals(patient.getGender().name(), "FEMALE");
    assertEquals(LocalDate.fromDateFields(patient.getBirthDate()).toString(), "1980-08-10");
    assertEquals(patient.getTelecom().get(0).getValue(), PHONE.getNumber());
    assertEquals(patient.getTelecom().get(0).getSystem().name(), "PHONE");
    assertEquals(patient.getTelecom().get(1).getValue(), PHONE.getNumber());
    assertEquals(patient.getTelecom().get(1).getSystem().name(), "SMS");
    assertEquals(patient.getTelecom().get(2).getValue(), EMAIL);
    assertEquals(patient.getTelecom().get(2).getSystem().name(), "EMAIL");
    Address address = patient.getAddress().get(0);
    assertEquals(address.getLine().get(0).getValue(), "123 Sesame Street");
    assertEquals(address.getLine().get(1).getValue(), "Apt. 6");
    assertEquals(address.getCity(), "Seattle");
    assertEquals(address.getState(), "WA");
    assertEquals(address.getPostalCode(), "10001");
}

Example 32 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project quality-measure-and-cohort-service by Alvearie.

the class PathCaptureContext method reportProperty.

public void reportProperty(Property elm) {
    // Log guarding to prevent some of the parameter resolution logic from getting called unnecessarily
    if (LOG.isTraceEnabled()) {
        LOG.trace("Property {} source {}", elm.getPath(), elm.getSource() != null ? elm.getSource().getClass().getSimpleName() : null);
    }
    Set<QName> modelTypeNames = null;
    if (elm.getScope() != null || elm.getSource() instanceof AliasRef) {
        String aliasName = (elm.getScope() != null) ? elm.getScope() : ((AliasRef) elm.getSource()).getName();
        QueryAliasContext aliasContext = getCurrentQueryContext().resolveAlias(aliasName);
        if (aliasContext == null) {
            aliasContext = getCurrentExpressionContext().resolveAlias(aliasName);
        }
        modelTypeNames = ElmUtils.getModelTypeNames(aliasContext.getAliasedQuerySource().getExpression());
    } else if (elm.getSource() instanceof QueryLetRef) {
        String letName = ((QueryLetRef) elm.getSource()).getName();
        QueryLetContext letContext = getCurrentQueryContext().resolveLet(letName);
        if (letContext == null) {
            letContext = getCurrentExpressionContext().resolveLet(letName);
        }
        modelTypeNames = ElmUtils.getModelTypeNames(letContext.getLetClause().getExpression());
    } else {
        // There are times when the scope is null. I've noticed this particularly when referencing properties
        // of another expression result
        modelTypeNames = ElmUtils.getModelTypeNames(elm.getSource());
    }
    LOG.trace("ModelTypeNames {}", modelTypeNames);
    if (modelTypeNames != null) {
        for (QName qname : modelTypeNames) {
            pathsByQName.computeIfAbsent(qname, key -> new HashSet<>()).add(elm.getPath());
        }
    }
}

Example 33 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project integration-adaptor-111 by nhsconnect.

the class MessageHeaderServiceTest method shouldCreateMessageHeader.

@Test
public void shouldCreateMessageHeader() {
    ItkReportHeader itkReportHeader = new ItkReportHeader();
    itkReportHeader.setSpecKey(SPECIFICATION_KEY);
    itkReportHeader.setSpecVal(SPECIFICATION_VALUE);
    itkReportHeader.setAddressList(Arrays.asList(ADDRESS));
    MessageHeader messageHeader = messageHeaderService.createMessageHeader(itkReportHeader, MESSAGEID, EFFECTIVE_TIME);
    assertThat(messageHeader.getId()).isEqualTo(MESSAGEID);
    Coding event = messageHeader.getEvent();
    assertThat(event.getSystem()).isEqualTo(MessageHeaderEvent.SYSTEM);
    assertThat(event.getCode()).isEqualTo(DISCHARGE_DETAILS.getCode());
    assertThat(event.getDisplay()).isEqualTo(DISCHARGE_DETAILS.getDisplay());
    MessageSourceComponent source = messageHeader.getSource();
    assertThat(source.getName()).isEqualTo(MESSAGE_SOURCE_NAME);
    assertThat(source.getEndpoint()).isEqualTo(ENDPOINT);
    assertThat(messageHeader.getReason().getCodingFirstRep().getSystem()).isEqualTo(SPECIFICATION_KEY);
    assertThat(messageHeader.getReason().getCodingFirstRep().getCode()).isEqualTo(SPECIFICATION_VALUE);
    assertThat(messageHeader.getDestinationFirstRep().getEndpoint()).isEqualTo(ADDRESS);
    assertThat(messageHeader.getTimestampElement()).isEqualToComparingFieldByField(DateUtil.parseToInstantType(EFFECTIVE_TIME));
}

Example 34 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project integration-adaptor-111 by nhsconnect.

the class MessageHeaderService method getSource.

private MessageSourceComponent getSource() {
    MessageSourceComponent source = new MessageSourceComponent();
    source.setName(MESSAGE_SOURCE_NAME);
    source.setEndpoint(soapProperties.getSendTo());
    return source;
}

Example 35 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class R2R3ConversionManager method convertToR3.

private void convertToR3(InputStream source, OutputStream dest, FhirFormat format) throws FHIRException, IOException {
    org.hl7.fhir.dstu3.elementmodel.Element r2 = new org.hl7.fhir.dstu3.elementmodel.XmlParser(contextR2).parse(source);
    StructureMap map = library.get("http://hl7.org/fhir/StructureMap/" + r2.fhirType() + "2to3");
    if (map == null)
        throw new FHIRException("No Map Found from R2 to R3 for " + r2.fhirType());
    String tn = smu3.getTargetType(map).getType();
    Resource r3 = ResourceFactory.createResource(tn);
    smu3.transform(new TransformContextR2R3(contextR3, r2.getChildValue("id")), r2, map, r3);
    FormatUtilities.makeParser(format).setOutputStyle(style).compose(dest, r3);
}