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Example 56 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method generateSnapshots.

private void generateSnapshots(String[] args) throws IOException, FHIRException {
    if (args.length == 1) {
        System.out.println("tools.jar snapshot-maker [source] -defn [definitions]");
        System.out.println("");
        System.out.println("Generates a snapshot from a differential. The nominated profile must have a single struture that has a differential");
        System.out.println("");
        System.out.println("source - the profile to generate the snapshot for. Maybe a file name, or a URL reference to a server running FHIR RESTful API");
        System.out.println("definitions - filename for local copy of the validation.zip file");
    }
    String address = args[1];
    String definitions = args[3];
    SimpleWorkerContext context = SimpleWorkerContext.fromDefinitions(getDefinitions(definitions));
    // } else {
    throw new NotImplementedException("generating snapshots not done yet (address = " + address + ")");
// }
}
Also used : NotImplementedException(org.apache.commons.lang3.NotImplementedException) SimpleWorkerContext(org.hl7.fhir.dstu2.utils.SimpleWorkerContext)

Example 57 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method processExamples.

public void processExamples(String rootDir, Collection<String> list) throws FHIRException {
    for (String n : list) {
        try {
            String filename = rootDir + n + ".xml";
            // 1. produce canonical XML
            CSFileInputStream source = new CSFileInputStream(filename);
            FileOutputStream dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.xml"));
            XmlParser p = new XmlParser();
            Resource r = p.parse(source);
            XmlParser cxml = new XmlParser();
            cxml.setOutputStyle(OutputStyle.CANONICAL);
            cxml.compose(dest, r);
            // 2. produce JSON
            source = new CSFileInputStream(filename);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".json"));
            r = p.parse(source);
            JsonParser json = new JsonParser();
            json.setOutputStyle(OutputStyle.PRETTY);
            json.compose(dest, r);
            json = new JsonParser();
            json.setOutputStyle(OutputStyle.CANONICAL);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.json"));
            json.compose(dest, r);
        } catch (Exception e) {
            e.printStackTrace();
            throw new FHIRException("Error Processing " + n + ".xml: " + e.getMessage(), e);
        }
    }
}
Also used : XmlParser(org.hl7.fhir.dstu2.formats.XmlParser) FileOutputStream(java.io.FileOutputStream) Resource(org.hl7.fhir.dstu2.model.Resource) FHIRException(org.hl7.fhir.exceptions.FHIRException) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) NotImplementedException(org.apache.commons.lang3.NotImplementedException) IOException(java.io.IOException) XmlPullParserException(org.xmlpull.v1.XmlPullParserException) FHIRException(org.hl7.fhir.exceptions.FHIRException) JsonParser(org.hl7.fhir.dstu2.formats.JsonParser)

Example 58 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeRoundTrip.

public void executeRoundTrip(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    if (args.length >= 4) {
        Utilities.copyFile(args[1], args[3]);
    }
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    JsonParser parser = new JsonParser();
    JsonParser pj = parser;
    Resource rf = p.parse(in);
    ByteArrayOutputStream json = new ByteArrayOutputStream();
    parser.setOutputStyle(OutputStyle.PRETTY);
    parser.compose(json, rf);
    json.close();
    TextFile.stringToFile(new String(json.toByteArray()), Utilities.changeFileExt(dest.getAbsolutePath(), ".json"));
    rf = pj.parse(new ByteArrayInputStream(json.toByteArray()));
    FileOutputStream s = new FileOutputStream(dest);
    new XmlParser().compose(s, rf, true);
    s.close();
}
Also used : XmlParser(org.hl7.fhir.dstu2.formats.XmlParser) ByteArrayInputStream(java.io.ByteArrayInputStream) FileOutputStream(java.io.FileOutputStream) Resource(org.hl7.fhir.dstu2.model.Resource) CSFile(org.hl7.fhir.utilities.CSFile) ByteArrayOutputStream(java.io.ByteArrayOutputStream) CSFile(org.hl7.fhir.utilities.CSFile) File(java.io.File) TextFile(org.hl7.fhir.utilities.TextFile) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileInputStream(java.io.FileInputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) JsonParser(org.hl7.fhir.dstu2.formats.JsonParser)

Example 59 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeJson.

public String executeJson(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    File destc = new CSFile(Utilities.changeFileExt(args[2], ".canonical.json"));
    File destt = new CSFile(args[2] + ".tmp");
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    Resource rf = p.parse(in);
    JsonParser json = new JsonParser();
    json.setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(dest);
    json.compose(s, rf);
    s.close();
    json.setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(destc);
    json.compose(s, rf);
    s.close();
    json.setSuppressXhtml("Snipped for Brevity");
    json.setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(destt);
    json.compose(s, rf);
    s.close();
    return TextFile.fileToString(destt.getAbsolutePath());
}
Also used : XmlParser(org.hl7.fhir.dstu2.formats.XmlParser) FileOutputStream(java.io.FileOutputStream) Resource(org.hl7.fhir.dstu2.model.Resource) CSFile(org.hl7.fhir.utilities.CSFile) CSFile(org.hl7.fhir.utilities.CSFile) File(java.io.File) TextFile(org.hl7.fhir.utilities.TextFile) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileInputStream(java.io.FileInputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) JsonParser(org.hl7.fhir.dstu2.formats.JsonParser)

Example 60 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeCanonicalXml.

public void executeCanonicalXml(String[] args) throws FHIRException, IOException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    Resource rf = p.parse(in);
    XmlParser cxml = new XmlParser();
    cxml.setOutputStyle(OutputStyle.NORMAL);
    cxml.compose(new FileOutputStream(dest), rf);
}
Also used : XmlParser(org.hl7.fhir.dstu2.formats.XmlParser) FileOutputStream(java.io.FileOutputStream) Resource(org.hl7.fhir.dstu2.model.Resource) CSFile(org.hl7.fhir.utilities.CSFile) CSFile(org.hl7.fhir.utilities.CSFile) File(java.io.File) TextFile(org.hl7.fhir.utilities.TextFile) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileInputStream(java.io.FileInputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream)

Aggregations

FHIRException (org.hl7.fhir.exceptions.FHIRException)125 FileInputStream (java.io.FileInputStream)59 FileOutputStream (java.io.FileOutputStream)55 IOException (java.io.IOException)55 ArrayList (java.util.ArrayList)48 File (java.io.File)45 CSFileInputStream (org.hl7.fhir.utilities.CSFileInputStream)45 TextFile (org.hl7.fhir.utilities.TextFile)41 CSFile (org.hl7.fhir.utilities.CSFile)35 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)35 Complex (org.hl7.fhir.r4.utils.formats.Turtle.Complex)30 XmlParser (org.hl7.fhir.r5.formats.XmlParser)28 Date (java.util.Date)27 HashMap (java.util.HashMap)26 Reference (org.hl7.fhir.r4.model.Reference)26 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)24 FHIRFormatError (org.hl7.fhir.exceptions.FHIRFormatError)24 Coding (org.hl7.fhir.r4.model.Coding)24 JsonObject (com.google.gson.JsonObject)22 NotImplementedException (org.apache.commons.lang3.NotImplementedException)22