Examples with Source org.hl7.fhir.utilities.validation.ValidationMessage.Source used on opensource projects

Example 76 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeDeviceComponent.

protected void composeDeviceComponent(Complex parent, String parentType, String name, DeviceComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "DeviceComponent", name, element, index);
    if (element.hasIdentifier())
        composeIdentifier(t, "DeviceComponent", "identifier", element.getIdentifier(), -1);
    if (element.hasType())
        composeCodeableConcept(t, "DeviceComponent", "type", element.getType(), -1);
    if (element.hasLastSystemChangeElement())
        composeInstant(t, "DeviceComponent", "lastSystemChange", element.getLastSystemChangeElement(), -1);
    if (element.hasSource())
        composeReference(t, "DeviceComponent", "source", element.getSource(), -1);
    if (element.hasParent())
        composeReference(t, "DeviceComponent", "parent", element.getParent(), -1);
    for (int i = 0; i < element.getOperationalStatus().size(); i++) composeCodeableConcept(t, "DeviceComponent", "operationalStatus", element.getOperationalStatus().get(i), i);
    if (element.hasParameterGroup())
        composeCodeableConcept(t, "DeviceComponent", "parameterGroup", element.getParameterGroup(), -1);
    if (element.hasMeasurementPrincipleElement())
        composeEnum(t, "DeviceComponent", "measurementPrinciple", element.getMeasurementPrincipleElement(), -1);
    for (int i = 0; i < element.getProductionSpecification().size(); i++) composeDeviceComponentDeviceComponentProductionSpecificationComponent(t, "DeviceComponent", "productionSpecification", element.getProductionSpecification().get(i), i);
    if (element.hasLanguageCode())
        composeCodeableConcept(t, "DeviceComponent", "languageCode", element.getLanguageCode(), -1);
}

Example 77 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class DocumentManifest method setProperty.

@Override
public void setProperty(String name, Base value) throws FHIRException {
    if (name.equals("masterIdentifier"))
        // Identifier
        this.masterIdentifier = castToIdentifier(value);
    else if (name.equals("identifier"))
        this.getIdentifier().add(castToIdentifier(value));
    else if (name.equals("subject"))
        // Reference
        this.subject = castToReference(value);
    else if (name.equals("recipient"))
        this.getRecipient().add(castToReference(value));
    else if (name.equals("type"))
        // CodeableConcept
        this.type = castToCodeableConcept(value);
    else if (name.equals("author"))
        this.getAuthor().add(castToReference(value));
    else if (name.equals("created"))
        // DateTimeType
        this.created = castToDateTime(value);
    else if (name.equals("source"))
        // UriType
        this.source = castToUri(value);
    else if (name.equals("status"))
        // Enumeration<DocumentReferenceStatus>
        this.status = new DocumentReferenceStatusEnumFactory().fromType(value);
    else if (name.equals("description"))
        // StringType
        this.description = castToString(value);
    else if (name.equals("content"))
        this.getContent().add((DocumentManifestContentComponent) value);
    else if (name.equals("related"))
        this.getRelated().add((DocumentManifestRelatedComponent) value);
    else
        super.setProperty(name, value);
}

Example 78 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method getProfile.

// private static String listStructures(StructureDefinition p) {
// StringBuilder b = new StringBuilder();
// boolean first = true;
// for (ProfileStructureComponent s : p.getStructure()) {
// if (first)
// first = false;
// else
// b.append(", ");
// if (pkp != null && pkp.hasLinkFor(s.getType()))
// b.append("<a href=\""+pkp.getLinkFor(s.getType())+"\">"+s.getType()+"</a>");
// else
// b.append(s.getType());
// }
// return b.toString();
// }
public StructureDefinition getProfile(StructureDefinition source, String url) {
    StructureDefinition profile;
    String code;
    if (url.startsWith("#")) {
        profile = source;
        code = url.substring(1);
    } else {
        String[] parts = url.split("\\#");
        profile = context.fetchResource(StructureDefinition.class, parts[0]);
        code = parts.length == 1 ? null : parts[1];
    }
    if (profile == null)
        return null;
    if (code == null)
        return profile;
    for (Resource r : profile.getContained()) {
        if (r instanceof StructureDefinition && r.getId().equals(code))
            return (StructureDefinition) r;
    }
    return null;
}

Example 79 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method updateFromDefinition.

private void updateFromDefinition(ElementDefinition dest, ElementDefinition source, String pn, boolean trimDifferential, String purl) throws DefinitionException, FHIRException {
    // we start with a clone of the base profile ('dest') and we copy from the profile ('source')
    // over the top for anything the source has
    ElementDefinition base = dest;
    ElementDefinition derived = source;
    derived.setUserData(DERIVATION_POINTER, base);
    if (derived != null) {
        boolean isExtension = checkExtensionDoco(base);
        if (derived.hasShortElement()) {
            if (!Base.compareDeep(derived.getShortElement(), base.getShortElement(), false))
                base.setShortElement(derived.getShortElement().copy());
            else if (trimDifferential)
                derived.setShortElement(null);
            else if (derived.hasShortElement())
                derived.getShortElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasDefinitionElement()) {
            if (derived.getDefinition().startsWith("..."))
                base.setDefinition(base.getDefinition() + "\r\n" + derived.getDefinition().substring(3));
            else if (!Base.compareDeep(derived.getDefinitionElement(), base.getDefinitionElement(), false))
                base.setDefinitionElement(derived.getDefinitionElement().copy());
            else if (trimDifferential)
                derived.setDefinitionElement(null);
            else if (derived.hasDefinitionElement())
                derived.getDefinitionElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasCommentsElement()) {
            if (derived.getComments().startsWith("..."))
                base.setComments(base.getComments() + "\r\n" + derived.getComments().substring(3));
            else if (!Base.compareDeep(derived.getCommentsElement(), base.getCommentsElement(), false))
                base.setCommentsElement(derived.getCommentsElement().copy());
            else if (trimDifferential)
                base.setCommentsElement(derived.getCommentsElement().copy());
            else if (derived.hasCommentsElement())
                derived.getCommentsElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasLabelElement()) {
            if (derived.getLabel().startsWith("..."))
                base.setLabel(base.getLabel() + "\r\n" + derived.getLabel().substring(3));
            else if (!Base.compareDeep(derived.getLabelElement(), base.getLabelElement(), false))
                base.setLabelElement(derived.getLabelElement().copy());
            else if (trimDifferential)
                base.setLabelElement(derived.getLabelElement().copy());
            else if (derived.hasLabelElement())
                derived.getLabelElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasRequirementsElement()) {
            if (derived.getRequirements().startsWith("..."))
                base.setRequirements(base.getRequirements() + "\r\n" + derived.getRequirements().substring(3));
            else if (!Base.compareDeep(derived.getRequirementsElement(), base.getRequirementsElement(), false))
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (trimDifferential)
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (derived.hasRequirementsElement())
                derived.getRequirementsElement().setUserData(DERIVATION_EQUALS, true);
        }
        // sdf-9
        if (derived.hasRequirements() && !base.getPath().contains("."))
            derived.setRequirements(null);
        if (base.hasRequirements() && !base.getPath().contains("."))
            base.setRequirements(null);
        if (derived.hasAlias()) {
            if (!Base.compareDeep(derived.getAlias(), base.getAlias(), false))
                for (StringType s : derived.getAlias()) {
                    if (!base.hasAlias(s.getValue()))
                        base.getAlias().add(s.copy());
                }
            else if (trimDifferential)
                derived.getAlias().clear();
            else
                for (StringType t : derived.getAlias()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinElement()) {
            if (!Base.compareDeep(derived.getMinElement(), base.getMinElement(), false)) {
                if (derived.getMin() < base.getMin())
                    messages.add(new ValidationMessage(Source.ProfileValidator, IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Derived min  (" + Integer.toString(derived.getMin()) + ") cannot be less than base min (" + Integer.toString(base.getMin()) + ")", IssueSeverity.ERROR));
                base.setMinElement(derived.getMinElement().copy());
            } else if (trimDifferential)
                derived.setMinElement(null);
            else
                derived.getMinElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxElement()) {
            if (!Base.compareDeep(derived.getMaxElement(), base.getMaxElement(), false)) {
                if (isLargerMax(derived.getMax(), base.getMax()))
                    messages.add(new ValidationMessage(Source.ProfileValidator, IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Derived max (" + derived.getMax() + ") cannot be greater than base max (" + base.getMax() + ")", IssueSeverity.ERROR));
                base.setMaxElement(derived.getMaxElement().copy());
            } else if (trimDifferential)
                derived.setMaxElement(null);
            else
                derived.getMaxElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasFixed()) {
            if (!Base.compareDeep(derived.getFixed(), base.getFixed(), true)) {
                base.setFixed(derived.getFixed().copy());
            } else if (trimDifferential)
                derived.setFixed(null);
            else
                derived.getFixed().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasPattern()) {
            if (!Base.compareDeep(derived.getPattern(), base.getPattern(), false)) {
                base.setPattern(derived.getPattern().copy());
            } else if (trimDifferential)
                derived.setPattern(null);
            else
                derived.getPattern().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasExample()) {
            if (!Base.compareDeep(derived.getExample(), base.getExample(), false))
                base.setExample(derived.getExample().copy());
            else if (trimDifferential)
                derived.setExample(null);
            else
                derived.getExample().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxLengthElement()) {
            if (!Base.compareDeep(derived.getMaxLengthElement(), base.getMaxLengthElement(), false))
                base.setMaxLengthElement(derived.getMaxLengthElement().copy());
            else if (trimDifferential)
                derived.setMaxLengthElement(null);
            else
                derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxValue()) {
            if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
                base.setMaxValue(derived.getMaxValue().copy());
            else if (trimDifferential)
                derived.setMaxValue(null);
            else
                derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinValue()) {
            if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
                base.setMinValue(derived.getMinValue().copy());
            else if (trimDifferential)
                derived.setMinValue(null);
            else
                derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMustSupportElement()) {
            if (!Base.compareDeep(derived.getMustSupportElement(), base.getMustSupportElement(), false))
                base.setMustSupportElement(derived.getMustSupportElement().copy());
            else if (trimDifferential)
                derived.setMustSupportElement(null);
            else
                derived.getMustSupportElement().setUserData(DERIVATION_EQUALS, true);
        }
        // but extensions can change isModifier
        if (isExtension) {
            if (!Base.compareDeep(derived.getIsModifierElement(), base.getIsModifierElement(), false))
                base.setIsModifierElement(derived.getIsModifierElement().copy());
            else if (trimDifferential)
                derived.setIsModifierElement(null);
            else
                derived.getIsModifierElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasBinding()) {
            if (!Base.compareDeep(derived.getBinding(), base.getBinding(), false)) {
                if (base.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && derived.getBinding().getStrength() != BindingStrength.REQUIRED)
                    messages.add(new ValidationMessage(Source.ProfileValidator, IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "illegal attempt to change a binding from " + base.getBinding().getStrength().toCode() + " to " + derived.getBinding().getStrength().toCode(), IssueSeverity.ERROR));
                else // throw new DefinitionException("StructureDefinition "+pn+" at "+derived.getPath()+": illegal attempt to change a binding from "+base.getBinding().getStrength().toCode()+" to "+derived.getBinding().getStrength().toCode());
                if (base.hasBinding() && derived.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED) {
                    ValueSetExpansionOutcome expBase = context.expandVS(context.fetchResource(ValueSet.class, base.getBinding().getValueSetReference().getReference()), true);
                    ValueSetExpansionOutcome expDerived = context.expandVS(context.fetchResource(ValueSet.class, derived.getBinding().getValueSetReference().getReference()), true);
                    if (expBase.getValueset() == null)
                        messages.add(new ValidationMessage(Source.ProfileValidator, IssueType.BUSINESSRULE, pn + "." + base.getPath(), "Binding " + base.getBinding().getValueSetReference().getReference() + " could not be expanded", IssueSeverity.WARNING));
                    else if (expDerived.getValueset() == null)
                        messages.add(new ValidationMessage(Source.ProfileValidator, IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSetReference().getReference() + " could not be expanded", IssueSeverity.WARNING));
                    else if (!isSubset(expBase.getValueset(), expDerived.getValueset()))
                        messages.add(new ValidationMessage(Source.ProfileValidator, IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSetReference().getReference() + " is not a subset of binding " + base.getBinding().getValueSetReference().getReference(), IssueSeverity.ERROR));
                }
                base.setBinding(derived.getBinding().copy());
            } else if (trimDifferential)
                derived.setBinding(null);
            else
                derived.getBinding().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasIsSummaryElement()) {
            if (!Base.compareDeep(derived.getIsSummaryElement(), base.getIsSummaryElement(), false))
                base.setIsSummaryElement(derived.getIsSummaryElement().copy());
            else if (trimDifferential)
                derived.setIsSummaryElement(null);
            else
                derived.getIsSummaryElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasType()) {
            if (!Base.compareDeep(derived.getType(), base.getType(), false)) {
                if (base.hasType()) {
                    for (TypeRefComponent ts : derived.getType()) {
                        boolean ok = false;
                        CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
                        for (TypeRefComponent td : base.getType()) {
                            b.append(td.getCode());
                            if (td.hasCode() && (td.getCode().equals(ts.getCode()) || td.getCode().equals("Extension") || td.getCode().equals("Element") || td.getCode().equals("*") || ((td.getCode().equals("Resource") || (td.getCode().equals("DomainResource")) && pkp.isResource(ts.getCode())))))
                                ok = true;
                        }
                        if (!ok)
                            throw new DefinitionException("StructureDefinition " + pn + " at " + derived.getPath() + ": illegal constrained type " + ts.getCode() + " from " + b.toString());
                    }
                }
                base.getType().clear();
                for (TypeRefComponent t : derived.getType()) {
                    TypeRefComponent tt = t.copy();
                    // tt.setUserData(DERIVATION_EQUALS, true);
                    base.getType().add(tt);
                }
            } else if (trimDifferential)
                derived.getType().clear();
            else
                for (TypeRefComponent t : derived.getType()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMapping()) {
            // todo: mappings are not cumulative - one replaces another
            if (!Base.compareDeep(derived.getMapping(), base.getMapping(), false)) {
                for (ElementDefinitionMappingComponent s : derived.getMapping()) {
                    boolean found = false;
                    for (ElementDefinitionMappingComponent d : base.getMapping()) {
                        found = found || (d.getIdentity().equals(s.getIdentity()) && d.getMap().equals(s.getMap()));
                    }
                    if (!found)
                        base.getMapping().add(s);
                }
            } else if (trimDifferential)
                derived.getMapping().clear();
            else
                for (ElementDefinitionMappingComponent t : derived.getMapping()) t.setUserData(DERIVATION_EQUALS, true);
        }
        // todo: constraints are cumulative. there is no replacing
        for (ElementDefinitionConstraintComponent s : base.getConstraint()) s.setUserData(IS_DERIVED, true);
        if (derived.hasConstraint()) {
            for (ElementDefinitionConstraintComponent s : derived.getConstraint()) {
                base.getConstraint().add(s.copy());
            }
        }
    }
}

Example 80 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class FHIRToolingClient method expandValueset.

public ValueSet expandValueset(ValueSet source, Parameters expParams, Map<String, String> params) {
    List<Header> headers = null;
    Parameters p = expParams == null ? new Parameters() : expParams.copy();
    p.addParameter().setName("valueSet").setResource(source);
    for (String n : params.keySet()) p.addParameter().setName(n).setValue(new StringType(params.get(n)));
    ResourceRequest<Resource> result = utils.issuePostRequest(resourceAddress.resolveOperationUri(ValueSet.class, "expand", params), utils.getResourceAsByteArray(p, false, isJson(getPreferredResourceFormat())), getPreferredResourceFormat(), headers, 4);
    // gone
    result.addErrorStatus(410);
    // unknown
    result.addErrorStatus(404);
    result.addErrorStatus(405);
    // Unprocessable Entity
    result.addErrorStatus(422);
    result.addSuccessStatus(200);
    result.addSuccessStatus(201);
    if (result.isUnsuccessfulRequest()) {
        throw new EFhirClientException("Server returned error code " + result.getHttpStatus(), (OperationOutcome) result.getPayload());
    }
    return (ValueSet) result.getPayload();
}