Examples with Source org.hl7.fhir.utilities.validation.ValidationMessage.Source used on opensource projects

Example 66 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeFragments.

public void executeFragments(String[] args) throws IOException {
    try {
        File source = new CSFile(args[1]);
        if (!source.exists())
            throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
        XmlPullParser xpp = loadXml(new FileInputStream(source));
        nextNoWhitespace(xpp);
        if (!xpp.getName().equals("tests"))
            throw new FHIRFormatError("Unable to parse file - starts with " + xpp.getName());
        xpp.next();
        nextNoWhitespace(xpp);
        StringBuilder s = new StringBuilder();
        s.append("<results>\r\n");
        int fail = 0;
        while (xpp.getEventType() == XmlPullParser.START_TAG && xpp.getName().equals("test")) {
            String id = xpp.getAttributeValue(null, "id");
            String type = xpp.getAttributeValue(null, "type");
            // test
            xpp.next();
            nextNoWhitespace(xpp);
            // pre
            xpp.next();
            nextNoWhitespace(xpp);
            XmlParser p = new XmlParser();
            try {
                p.parseFragment(xpp, type);
                s.append("<result id=\"" + id + "\" outcome=\"ok\"/>\r\n");
                nextNoWhitespace(xpp);
            } catch (Exception e) {
                s.append("<result id=\"" + id + "\" outcome=\"error\" msg=\"" + Utilities.escapeXml(e.getMessage()) + "\"/>\r\n");
                fail++;
            }
            while (xpp.getEventType() != XmlPullParser.END_TAG || !xpp.getName().equals("pre")) xpp.next();
            xpp.next();
            nextNoWhitespace(xpp);
            xpp.next();
            nextNoWhitespace(xpp);
        }
        s.append("</results>\r\n");
        TextFile.stringToFile(s.toString(), args[2]);
    } catch (Exception e) {
        e.printStackTrace();
        TextFile.stringToFile(e.getMessage(), args[2]);
    }
}

Example 67 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeRoundTrip.

public void executeRoundTrip(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    if (args.length >= 4) {
        Utilities.copyFile(args[1], args[3]);
    }
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    JsonParser parser = new JsonParser();
    JsonParser pj = parser;
    Resource rf = p.parse(in);
    ByteArrayOutputStream json = new ByteArrayOutputStream();
    parser.setOutputStyle(OutputStyle.PRETTY);
    parser.compose(json, rf);
    json.close();
    TextFile.stringToFile(new String(json.toByteArray()), Utilities.changeFileExt(dest.getAbsolutePath(), ".json"));
    rf = pj.parse(new ByteArrayInputStream(json.toByteArray()));
    FileOutputStream s = new FileOutputStream(dest);
    new XmlParser().compose(s, rf, true);
    s.close();
}

Example 68 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method processExamples.

public void processExamples(String rootDir, Collection<String> list) throws FHIRException {
    for (String n : list) {
        try {
            String filename = rootDir + n + ".xml";
            // 1. produce canonical XML
            CSFileInputStream source = new CSFileInputStream(filename);
            FileOutputStream dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.xml"));
            XmlParser p = new XmlParser();
            Resource r = p.parse(source);
            XmlParser cxml = new XmlParser();
            cxml.setOutputStyle(OutputStyle.CANONICAL);
            cxml.compose(dest, r);
            // 2. produce JSON
            source = new CSFileInputStream(filename);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".json"));
            r = p.parse(source);
            JsonParser json = new JsonParser();
            json.setOutputStyle(OutputStyle.PRETTY);
            json.compose(dest, r);
            json = new JsonParser();
            json.setOutputStyle(OutputStyle.CANONICAL);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.json"));
            json.compose(dest, r);
            // 2. produce JSON
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".ttl"));
            RdfParserBase rdf = new RdfParser();
            rdf.compose(dest, r);
        } catch (Exception e) {
            e.printStackTrace();
            throw new FHIRException("Error Processing " + n + ".xml: " + e.getMessage(), e);
        }
    }
}

Example 69 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method testRoundTrip.

public void testRoundTrip(String rootDir, String tmpDir, Collection<String> names) throws Throwable {
    try {
        System.err.println("Round trip from " + rootDir + " to " + tmpDir + ":" + Integer.toString(names.size()) + " files");
        for (String n : names) {
            System.err.print("  " + n);
            String source = rootDir + n + ".xml";
            // String tmpJson = tmpDir + n + ".json";
            String tmp = tmpDir + n.replace(File.separator, "-") + ".tmp";
            String dest = tmpDir + n.replace(File.separator, "-") + ".java.xml";
            FileInputStream in = new FileInputStream(source);
            XmlParser xp = new XmlParser();
            Resource r = xp.parse(in);
            System.err.print(".");
            JsonParser jp = new JsonParser();
            FileOutputStream out = new FileOutputStream(tmp);
            jp.setOutputStyle(OutputStyle.PRETTY);
            jp.compose(out, r);
            out.close();
            r = null;
            System.err.print(".");
            in = new FileInputStream(tmp);
            System.err.print(",");
            r = jp.parse(in);
            System.err.print(".");
            out = new FileOutputStream(dest);
            new XmlParser().compose(out, r, true);
            System.err.println("!");
            out.close();
            r = null;
            System.gc();
        }
    } catch (Throwable e) {
        System.err.println("Error: " + e.getMessage());
        throw e;
    }
}

Example 70 with Source

use of org.hl7.fhir.utilities.validation.ValidationMessage.Source in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImplementationGuideImplementationGuidePackageResourceComponent.

protected void composeImplementationGuideImplementationGuidePackageResourceComponent(Complex parent, String parentType, String name, ImplementationGuide.ImplementationGuidePackageResourceComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "resource", name, element, index);
    if (element.hasExampleElement())
        composeBoolean(t, "ImplementationGuide", "example", element.getExampleElement(), -1);
    if (element.hasNameElement())
        composeString(t, "ImplementationGuide", "name", element.getNameElement(), -1);
    if (element.hasDescriptionElement())
        composeString(t, "ImplementationGuide", "description", element.getDescriptionElement(), -1);
    if (element.hasAcronymElement())
        composeString(t, "ImplementationGuide", "acronym", element.getAcronymElement(), -1);
    if (element.hasSource())
        composeType(t, "ImplementationGuide", "source", element.getSource(), -1);
    if (element.hasExampleFor())
        composeReference(t, "ImplementationGuide", "exampleFor", element.getExampleFor(), -1);
}