Examples with ValidationMessage org.hl7.fhir.utilities.validation.ValidationMessage used on opensource projects

Example 36 with ValidationMessage

use of org.hl7.fhir.utilities.validation.ValidationMessage in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testCardinalityChange.

/**
 * Change one cardinality.
 *
 * @param context2
 * @
 * @throws EOperationOutcome
 */
private void testCardinalityChange() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setMin(1);
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.identifier")) {
                    ok = f.getMin() == 1;
                    if (ok)
                        f.setMin(0);
                }
                ok = ok && Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation chenge cardinality test failed");
    } else
        System.out.println("Snap shot generation chenge cardinality test passed");
}

Example 37 with ValidationMessage

use of org.hl7.fhir.utilities.validation.ValidationMessage in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method execute.

public void execute(String[] args) throws FileNotFoundException, IOException, FHIRException {
    System.out.println("loading context");
    context = SimpleWorkerContext.fromPack(Utilities.path(root, "validation.zip"));
    comp = new ProfileComparer(context);
    compare("patient-daf-dafpatient.profile.xml", "patient-qicore-qicore-patient.profile.xml");
    compare("encounter-daf-dafencounter.profile.xml", "encounter-qicore-qicore-encounter.profile.xml");
    compare("substance-daf-dafsubstance.profile.xml", "substance-qicore-qicore-substance.profile.xml");
    compare("medication-daf-dafmedication.profile.xml", "medication-qicore-qicore-medication.profile.xml");
    compare("procedure-daf-dafprocedure.profile.xml", "procedure-qicore-qicore-procedure.profile.xml");
    compare("familymemberhistory-daf-daffamilymemberhistory.profile.xml", "familymemberhistory-qicore-qicore-familymemberhistory.profile.xml");
    compare("immunization-daf-dafimmunization.profile.xml", "immunization-qicore-qicore-immunization.profile.xml");
    compare("condition-daf-dafcondition.profile.xml", "condition-qicore-qicore-condition.profile.xml");
    compare("allergyintolerance-daf-dafallergyintolerance.profile.xml", "allergyintolerance-qicore-qicore-allergyintolerance.profile.xml");
    compare("medicationadministration-daf-dafmedicationadministration.profile.xml", "medicationadministration-qicore-qicore-medicationadministration.profile.xml");
    compare("medicationdispense-daf-dafmedicationdispense.profile.xml", "medicationdispense-qicore-qicore-medicationdispense.profile.xml");
    compare("medicationprescription-daf-dafmedicationprescription.profile.xml", "medicationprescription-qicore-qicore-medicationprescription.profile.xml");
    compare("medicationstatement-daf-dafmedicationstatement.profile.xml", "medicationstatement-qicore-qicore-medicationstatement.profile.xml");
    compare("observation-daf-smokingstatus-dafsmokingstatus.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    compare("observation-daf-vitalsigns-dafvitalsigns.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("observation-daf-results-dafresultobs.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("diagnosticorder-daf-dafdiagnosticorder.profile.xml", "diagnosticorder-qicore-qicore-diagnosticorder.profile.xml");
    // compare("diagnosticreport-daf-dafdiagnosticreport.profile.xml", "diagnosticreport-qicore-qicore-diagnosticreport.profile.xml");
    System.out.println("processing output");
    for (ProfileComparison outcome : comp.getComparisons()) {
        if (outcome.getSubset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "intersection-" + outcome.getId() + ".xml")), outcome.getSubset());
        if (outcome.getSuperset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "union-" + outcome.getId() + ".xml")), outcome.getSuperset());
        System.out.println("\r\n" + outcome.getId() + ": Comparison of " + outcome.getLeft().getUrl() + " and " + outcome.getRight().getUrl());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.INFORMATION)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.WARNING)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.ERROR)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.FATAL)
            System.out.println(vm.summary());
        System.out.println("done. " + Integer.toString(outcome.getMessages().size()) + " messages");
        System.out.println("=================================================================");
    }
}

Example 38 with ValidationMessage

use of org.hl7.fhir.utilities.validation.ValidationMessage in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSlicingExtension.

/**
 * we're going to slice Patient.extension and refer to extension by profile
 *
 * implicit: whether to rely on implicit extension slicing
 */
private void testSlicingExtension(boolean implicit) throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    // set the slice up
    ElementDefinition id;
    if (!implicit) {
        id = focus.getDifferential().addElement();
        id.setPath("Patient.extension");
        id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
        id.setMax("3");
    }
    // first slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.extension");
    id.setSliceName("name1");
    id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-birthTime");
    id.setMin(1);
    // second slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.extension");
    id.setSliceName("name2");
    id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    ProfileUtilities pu = new ProfileUtilities(context, messages, null);
    pu.generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    // 2 different: extension slices
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 2;
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i <= 7 ? i : i + 2);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.extension")) {
                    ok = f.hasSlicing() && (implicit || f.getMax().equals("3"));
                    if (ok) {
                        f.setSlicing(null);
                        f.setMaxElement(b.getMaxElement());
                    }
                }
                if (// no compare that because the definitions get overwritten
                !f.getPath().equals("Patient.extension"))
                    ok = Base.compareDeep(b, f, true);
            }
        }
    }
    // now, check that the slices we skipped are correct:
    if (ok) {
        ElementDefinition d1 = focus.getSnapshot().getElement().get(8);
        ElementDefinition d2 = focus.getSnapshot().getElement().get(9);
        ok = d1.hasType() && d1.getType().get(0).hasProfile() && d2.hasType() && d2.getType().get(0).hasProfile() && !Base.compareDeep(d1.getType(), d2.getType(), true) && d1.getMin() == 1 && d2.getMin() == 0 && d1.getMax().equals("1") && d2.getMax().equals("1");
        if (ok) {
            d1.getType().clear();
            d2.getType().clear();
            d1.setSliceName("x");
            d2.setSliceName("x");
            d1.setMin(0);
        }
        ok = Base.compareDeep(d1, d2, true);
    // for throughness, we could check against extension too, but this is not done now.
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation slicing extensions simple (" + (implicit ? "implicit" : "not implicit") + ") failed");
    } else
        System.out.println("Snap shot generation slicing extensions simple (" + (implicit ? "implicit" : "not implicit") + ") passed");
}

Example 39 with ValidationMessage

use of org.hl7.fhir.utilities.validation.ValidationMessage in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSlicingSimple.

/**
 * we're going to slice Patient.identifier
 */
private void testSlicingSimple() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    // set the slice up
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("use").setType(DiscriminatorType.VALUE);
    // first slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setSliceName("name1");
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier.use");
    id.setFixed(new CodeType("usual"));
    // second slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setSliceName("name2");
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier.use");
    id.setFixed(new CodeType("official"));
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    // 18 different: identifier + 8 inner children * 2
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 18;
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i <= 9 ? i : i + 18);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.identifier")) {
                    ok = f.hasSlicing();
                    if (ok)
                        f.setSlicing(null);
                }
                ok = Base.compareDeep(b, f, true);
            }
        }
    }
    // now, check that the slices we skipped are correct:
    for (int i = 10; i <= 18; i++) {
        if (ok) {
            ElementDefinition d1 = focus.getSnapshot().getElement().get(i);
            ElementDefinition d2 = focus.getSnapshot().getElement().get(i + 9);
            if (d1.getPath().equals("Patient.identifier.use")) {
                ok = d1.hasFixed() && d2.hasFixed() && !Base.compareDeep(d1.getFixed(), d2.getFixed(), true);
                if (ok) {
                    d1.setFixed(null);
                    d2.setFixed(null);
                }
            }
            if (d1.getPath().equals("Patient.identifier")) {
                ok = d1.hasSliceName() && d2.hasSliceName() && !Base.compareDeep(d1.getSliceNameElement(), d2.getSliceNameElement(), true);
                if (ok) {
                    d1.setSliceName(null);
                    d2.setSliceName(null);
                }
            }
            ok = Base.compareDeep(d1, d2, true);
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation slicing failed");
    } else
        System.out.println("Snap shot generation slicing passed");
}

Example 40 with ValidationMessage

use of org.hl7.fhir.utilities.validation.ValidationMessage in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSlicingTask8742.

private void testSlicingTask8742() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Organization").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Organization.address");
    id.setMin(1);
    id.setMax("1");
    id.setMustSupport(true);
    id = focus.getDifferential().addElement();
    id.setPath("Organization.address.extension");
    id.setSliceName("USLabCountycodes");
    id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
    id.setShort("County/Parish FIPS codes");
    id.setDefinition("County/Parish FIPS codes.");
    id.setRequirements("County/Parish Code SHALL use FIPS 6-4  ( INCITS 31:2009).");
    id.setMin(0);
    id.setMax("1");
    id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/us-core-county");
    id.setMustSupport(true);
    id.getBinding().setStrength(BindingStrength.REQUIRED).setDescription("FIPS codes for US counties and county equivalent entities.").setValueSet(new Reference().setReference("http://hl7.org/fhir/ValueSet/fips-county"));
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    // 14 for address with one sliced extension
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 13;
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation test 8742 failed");
    } else
        System.out.println("Snap shot generation test 8742 passed");
}