Examples with XhtmlComposer org.hl7.fhir.utilities.xhtml.XhtmlComposer used on opensource projects

Example 46 with XhtmlComposer

use of org.hl7.fhir.utilities.xhtml.XhtmlComposer in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateByProfile.

private String generateByProfile(Element er, StructureDefinition profile, boolean showCodeDetails) throws IOException, org.hl7.fhir.exceptions.FHIRException {
    XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
    x.para().b().tx("Generated Narrative" + (showCodeDetails ? " with Details" : ""));
    try {
        generateByProfile(er, profile, er, profile.getSnapshot().getElement(), profile.getSnapshot().getElement().get(0), getChildrenForPath(profile.getSnapshot().getElement(), er.getLocalName()), x, er.getLocalName(), showCodeDetails);
    } catch (Exception e) {
        e.printStackTrace();
        x.para().b().setAttribute("style", "color: maroon").tx("Exception generating Narrative: " + e.getMessage());
    }
    inject(er, x, NarrativeStatus.GENERATED);
    String b = new XhtmlComposer(XhtmlComposer.XML, pretty).compose(x);
    return b;
}

Example 47 with XhtmlComposer

use of org.hl7.fhir.utilities.xhtml.XhtmlComposer in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpansionCache method loadCache.

private void loadCache() throws FHIRFormatError, IOException {
    File[] files = new File(cacheFolder).listFiles();
    for (File f : files) {
        if (f.getName().endsWith(".xml")) {
            final FileInputStream is = new FileInputStream(f);
            try {
                Resource r = context.newXmlParser().setOutputStyle(OutputStyle.PRETTY).parse(is);
                if (r instanceof OperationOutcome) {
                    OperationOutcome oo = (OperationOutcome) r;
                    expansions.put(ToolingExtensions.getExtension(oo, VS_ID_EXT).getValue().toString(), new ValueSetExpansionOutcome(new XhtmlComposer(XhtmlComposer.XML, false).composePlainText(oo.getText().getDiv()), TerminologyServiceErrorClass.UNKNOWN));
                } else if (r instanceof ValueSet) {
                    ValueSet vs = (ValueSet) r;
                    if (vs.hasExpansion())
                        expansions.put(vs.getUrl(), new ValueSetExpansionOutcome(vs));
                    else {
                        canonicals.put(vs.getUrl(), vs);
                        if (vs.hasVersion())
                            canonicals.put(vs.getUrl() + "|" + vs.getVersion(), vs);
                    }
                } else if (r instanceof CanonicalResource) {
                    CanonicalResource md = (CanonicalResource) r;
                    canonicals.put(md.getUrl(), md);
                    if (md.hasVersion())
                        canonicals.put(md.getUrl() + "|" + md.getVersion(), md);
                }
            } finally {
                IOUtils.closeQuietly(is);
            }
        }
    }
}

Example 48 with XhtmlComposer

use of org.hl7.fhir.utilities.xhtml.XhtmlComposer in project org.hl7.fhir.core by hapifhir.

the class XmlParser method parseChildren.

private void parseChildren(String path, org.w3c.dom.Element node, Element element) throws FHIRFormatError, FHIRException, IOException, DefinitionException {
    // this parsing routine retains the original order in a the XML file, to support validation
    reapComments(node, element);
    List<Property> properties = element.getProperty().getChildProperties(element.getName(), XMLUtil.getXsiType(node));
    String text = XMLUtil.getDirectText(node).trim();
    int line = line(node);
    int col = col(node);
    if (!Utilities.noString(text)) {
        Property property = getTextProp(properties);
        if (property != null) {
            if ("ED.data[x]".equals(property.getDefinition().getId()) || (property.getDefinition() != null && property.getDefinition().getBase() != null && "ED.data[x]".equals(property.getDefinition().getBase().getPath()))) {
                if ("B64".equals(node.getAttribute("representation"))) {
                    Element n = new Element("dataBase64Binary", property, "base64Binary", text).markLocation(line, col);
                    n.setPath(element.getPath() + "." + property.getName());
                    element.getChildren().add(n);
                } else {
                    Element n = new Element("dataString", property, "string", text).markLocation(line, col);
                    n.setPath(element.getPath() + "." + property.getName());
                    element.getChildren().add(n);
                }
            } else {
                Element n = new Element(property.getName(), property, property.getType(), text).markLocation(line, col);
                n.setPath(element.getPath() + "." + property.getName());
                element.getChildren().add(n);
            }
        } else {
            Node n = node.getFirstChild();
            while (n != null) {
                if (n.getNodeType() == Node.TEXT_NODE && !Utilities.noString(n.getTextContent().trim())) {
                    while (n.getNextSibling() != null && n.getNodeType() != Node.ELEMENT_NODE) {
                        n = n.getNextSibling();
                    }
                    while (n.getPreviousSibling() != null && n.getNodeType() != Node.ELEMENT_NODE) {
                        n = n.getPreviousSibling();
                    }
                    line = line(n);
                    col = col(n);
                    logError(line, col, path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.TEXT_SHOULD_NOT_BE_PRESENT, text), IssueSeverity.ERROR);
                }
                n = n.getNextSibling();
            }
        }
    }
    for (int i = 0; i < node.getAttributes().getLength(); i++) {
        Node attr = node.getAttributes().item(i);
        String value = attr.getNodeValue();
        if (!validAttrValue(value)) {
            logError(line, col, path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.XML_ATTR_VALUE_INVALID, attr.getNodeName()), IssueSeverity.ERROR);
        }
        if (!(attr.getNodeName().equals("xmlns") || attr.getNodeName().startsWith("xmlns:"))) {
            Property property = getAttrProp(properties, attr.getLocalName(), attr.getNamespaceURI());
            if (property != null) {
                String av = attr.getNodeValue();
                if (ToolingExtensions.hasExtension(property.getDefinition(), "http://www.healthintersections.com.au/fhir/StructureDefinition/elementdefinition-dateformat"))
                    av = convertForDateFormatFromExternal(ToolingExtensions.readStringExtension(property.getDefinition(), "http://www.healthintersections.com.au/fhir/StructureDefinition/elementdefinition-dateformat"), av);
                if (property.getName().equals("value") && element.isPrimitive())
                    element.setValue(av);
                else {
                    Element n = new Element(property.getName(), property, property.getType(), av).markLocation(line, col);
                    n.setPath(element.getPath() + "." + property.getName());
                    element.getChildren().add(n);
                }
            } else {
                boolean ok = false;
                if (FormatUtilities.FHIR_NS.equals(node.getNamespaceURI())) {
                    if (attr.getLocalName().equals("schemaLocation") && FormatUtilities.NS_XSI.equals(attr.getNamespaceURI())) {
                        ok = ok || allowXsiLocation;
                    }
                } else
                    // xsi:schemalocation allowed for non FHIR content
                    ok = ok || (attr.getLocalName().equals("schemaLocation"));
                // xsi:type allowed if element says so
                ok = ok || (hasTypeAttr(element) && attr.getLocalName().equals("type") && FormatUtilities.NS_XSI.equals(attr.getNamespaceURI()));
                if (!ok)
                    logError(line, col, path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.UNDEFINED_ATTRIBUTE__ON__FOR_TYPE__PROPERTIES__, attr.getNodeName(), node.getNodeName(), element.fhirType(), properties), IssueSeverity.ERROR);
            }
        }
    }
    String lastName = null;
    int repeatCount = 0;
    Node child = node.getFirstChild();
    while (child != null) {
        if (child.getNodeType() == Node.ELEMENT_NODE) {
            Property property = getElementProp(properties, child.getLocalName(), child.getNamespaceURI());
            if (property != null) {
                if (property.getName().equals(lastName)) {
                    repeatCount++;
                } else {
                    lastName = property.getName();
                    repeatCount = 0;
                }
                if (!property.isChoice() && "xhtml".equals(property.getType())) {
                    XhtmlNode xhtml;
                    if (property.getDefinition().hasRepresentation(PropertyRepresentation.CDATEXT))
                        xhtml = new CDANarrativeFormat().convert((org.w3c.dom.Element) child);
                    else
                        xhtml = new XhtmlParser().setValidatorMode(true).parseHtmlNode((org.w3c.dom.Element) child);
                    Element n = new Element(property.getName(), property, "xhtml", new XhtmlComposer(XhtmlComposer.XML, false).compose(xhtml)).setXhtml(xhtml).markLocation(line(child), col(child));
                    n.setPath(element.getPath() + "." + property.getName());
                    element.getChildren().add(n);
                } else {
                    String npath = path + "/" + pathPrefix(child.getNamespaceURI()) + child.getLocalName();
                    Element n = new Element(child.getLocalName(), property).markLocation(line(child), col(child));
                    if (property.isList()) {
                        n.setPath(element.getPath() + "." + property.getName() + "[" + repeatCount + "]");
                    } else {
                        n.setPath(element.getPath() + "." + property.getName());
                    }
                    checkElement((org.w3c.dom.Element) child, npath, n.getProperty());
                    boolean ok = true;
                    if (property.isChoice()) {
                        if (property.getDefinition().hasRepresentation(PropertyRepresentation.TYPEATTR)) {
                            String xsiType = ((org.w3c.dom.Element) child).getAttributeNS(FormatUtilities.NS_XSI, "type");
                            if (Utilities.noString(xsiType)) {
                                if (ToolingExtensions.hasExtension(property.getDefinition(), "http://hl7.org/fhir/StructureDefinition/elementdefinition-defaulttype")) {
                                    xsiType = ToolingExtensions.readStringExtension(property.getDefinition(), "http://hl7.org/fhir/StructureDefinition/elementdefinition-defaulttype");
                                    n.setType(xsiType);
                                } else {
                                    logError(line(child), col(child), path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.NO_TYPE_FOUND_ON_, child.getLocalName()), IssueSeverity.ERROR);
                                    ok = false;
                                }
                            } else {
                                if (xsiType.contains(":"))
                                    xsiType = xsiType.substring(xsiType.indexOf(":") + 1);
                                n.setType(xsiType);
                                n.setExplicitType(xsiType);
                            }
                        } else
                            n.setType(n.getType());
                    }
                    element.getChildren().add(n);
                    if (ok) {
                        if (property.isResource())
                            parseResource(npath, (org.w3c.dom.Element) child, n, property);
                        else
                            parseChildren(npath, (org.w3c.dom.Element) child, n);
                    }
                }
            } else
                logError(line(child), col(child), path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.UNDEFINED_ELEMENT_, child.getLocalName()), IssueSeverity.ERROR);
        } else if (child.getNodeType() == Node.CDATA_SECTION_NODE) {
            logError(line(child), col(child), path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.CDATA_IS_NOT_ALLOWED), IssueSeverity.ERROR);
        } else if (!Utilities.existsInList(child.getNodeType(), 3, 8)) {
            logError(line(child), col(child), path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.NODE_TYPE__IS_NOT_ALLOWED, Integer.toString(child.getNodeType())), IssueSeverity.ERROR);
        }
        child = child.getNextSibling();
    }
}

Example 49 with XhtmlComposer

use of org.hl7.fhir.utilities.xhtml.XhtmlComposer in project kindling by HL7.

the class PageProcessor method renderCodeSystemWithLangs.

private String renderCodeSystemWithLangs(Set<String> langs, CodeSystem cs, String prefix) throws Exception {
    Narrative n = cs.getText();
    StringBuilder b = new StringBuilder();
    b.append("<div id=\"tabs\" style=\"border-right-style: none;\">\r\n");
    b.append("<ul>\r\n");
    b.append("<li><a href=\"#tabs-all\">All Languages</a></li>\r\n");
    b.append("<li><a href=\"#tabs-en\">English</a></li>\r\n");
    for (String l : sorted(langs)) b.append("<li><a href=\"#tabs-" + l + "\">" + langDisplay(l) + "</a></li>\r\n");
    b.append("</ul>\r\n");
    b.append("<div id=\"tabs-all\">\r\n");
    cs.setText(null);
    RenderingContext lrc = rc.copy().setLang("*");
    RendererFactory.factory(cs, lrc).render(cs);
    b.append(new XhtmlComposer(XhtmlComposer.HTML).compose(cs.getText().getDiv()));
    b.append("</div>\r\n");
    b.append("<div id=\"tabs-en\">\r\n");
    cs.setText(null);
    lrc = rc.copy().setLang("en");
    RendererFactory.factory(cs, lrc).render(cs);
    b.append(new XhtmlComposer(XhtmlComposer.HTML).compose(cs.getText().getDiv()));
    b.append("</div>\r\n");
    for (String l : sorted(langs)) {
        b.append("<div id=\"tabs-" + l + "\">\r\n");
        String desc = cs.getDescriptionElement().getTranslation(l);
        if (!Utilities.noString(desc))
            b.append(processMarkdown("RenderingCodeSystem", workerContext.translator().translate("render-cs", "Definition", l) + ": " + desc, prefix));
        cs.setText(null);
        lrc = rc.copy().setLang(l);
        RendererFactory.factory(cs, lrc).render(cs);
        b.append(new XhtmlComposer(XhtmlComposer.HTML).compose(cs.getText().getDiv()));
        b.append("</div>\r\n");
    }
    b.append("</div>\r\n");
    cs.setText(n);
    return b.toString();
}

Example 50 with XhtmlComposer

use of org.hl7.fhir.utilities.xhtml.XhtmlComposer in project kindling by HL7.

the class PageProcessor method genDependencyGraph.

private String genDependencyGraph(ResourceDefn resource, String prefix) throws Exception {
    ElementDefn e = resource.getRoot();
    ResourceDependencyGenerator gen = new ResourceDependencyGenerator(folders.dstDir, this, resource.getName() + "-definitions.html", false, resource.getFmmLevel(), resource.getStatus());
    return "<p>Dependency Graph for " + resource.getName() + " FMM level " + resource.getFmmLevel() + "</p>" + new XhtmlComposer(XhtmlComposer.HTML).compose(gen.generate(e, prefix));
}