Examples with Narrative org.hl7.fhir.r5.model.Narrative used on opensource projects

Example 1 with Narrative

use of org.hl7.fhir.r5.model.Narrative in project bunsen by cerner.

the class TestData method newCondition.

/**
 * Returns a FHIR Condition for testing purposes.
 */
public static Condition newCondition() {
    Condition condition = new Condition();
    // Condition based on example from FHIR:
    // https://www.hl7.org/fhir/condition-example.json.html
    condition.setId("Condition/example");
    condition.setLanguage("en_US");
    // Narrative text
    Narrative narrative = new Narrative();
    narrative.setStatusAsString("generated");
    narrative.setDivAsString("This data was generated for test purposes.");
    XhtmlNode node = new XhtmlNode();
    node.setNodeType(NodeType.Text);
    node.setValue("Severe burn of left ear (Date: 24-May 2012)");
    condition.setText(narrative);
    condition.setSubject(new Reference("Patient/example").setDisplay("Here is a display for you."));
    condition.setVerificationStatus(Condition.ConditionVerificationStatus.CONFIRMED);
    // Condition code
    CodeableConcept code = new CodeableConcept();
    code.addCoding().setSystem("http://snomed.info/sct").setCode("39065001").setDisplay("Severe");
    condition.setSeverity(code);
    // Severity code
    CodeableConcept severity = new CodeableConcept();
    severity.addCoding().setSystem("http://snomed.info/sct").setCode("24484000").setDisplay("Burn of ear").setUserSelected(true);
    condition.setSeverity(severity);
    // Onset date time
    DateTimeType onset = new DateTimeType();
    onset.setValueAsString("2012-05-24");
    condition.setOnset(onset);
    return condition;
}

Example 2 with Narrative

use of org.hl7.fhir.r5.model.Narrative in project kindling by HL7.

the class Publisher method addToResourceFeed.

private void addToResourceFeed(ValueSet vs, Bundle dest, String filename) throws Exception {
    maybeFixResourceId(vs, filename);
    if (vs.getId() == null)
        throw new Exception("Resource has no id: " + vs.getName() + " (" + vs.getUrl() + ")");
    if (ResourceUtilities.getById(dest, ResourceType.ValueSet, vs.getId()) != null)
        throw new Exception("Attempt to add duplicate value set " + vs.getId() + " (" + vs.getName() + ")");
    if (!vs.hasText() || !vs.getText().hasDiv()) {
        RendererFactory.factory(vs, page.getRc().copy()).render(vs);
    }
    if (!vs.hasText() || vs.getText().getDiv() == null)
        throw new Exception("Example Value Set " + vs.getId() + " does not have any narrative");
    ResourceUtilities.meta(vs).setLastUpdated(page.getGenDate().getTime());
    if (vs.getUrl().startsWith("http://hl7.org/fhir/") && !vs.getUrl().equals("http://hl7.org/fhir/" + vs.getResourceType().toString() + "/" + vs.getId()))
        throw new Exception("URL mismatch on value set: " + vs.getUrl() + " vs " + "http://hl7.org/fhir/" + vs.getResourceType().toString() + "/" + vs.getId());
    dest.getEntry().add(new BundleEntryComponent().setResource(vs).setFullUrl("http://hl7.org/fhir/" + vs.fhirType() + "/" + vs.getId()));
}

Example 3 with Narrative

use of org.hl7.fhir.r5.model.Narrative in project kindling by HL7.

the class Publisher method genProfiledTypeProfile.

private void genProfiledTypeProfile(ProfiledType pt) throws Exception {
    StructureDefinition profile = new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(pt, page.getValidationErrors());
    if (page.getProfiles().has(profile.getUrl()))
        throw new Exception("Duplicate Profile URL " + profile.getUrl());
    page.getProfiles().see(profile, page.packageInfo());
    pt.setProfile(profile);
// todo: what to do in the narrative?
}

Example 4 with Narrative

use of org.hl7.fhir.r5.model.Narrative in project kindling by HL7.

the class Publisher method generateCodeSystemsPart1.

private void generateCodeSystemsPart1() throws Exception {
    page.log(" ...code systems", LogMessageType.Process);
    for (CodeSystem cs : page.getDefinitions().getCodeSystems().getList()) {
        if (cs != null && !cs.hasUserData("external.url")) {
            if (!cs.hasText()) {
                cs.setText(new Narrative());
                cs.getText().setStatus(NarrativeStatus.EMPTY);
            }
            if (!cs.getText().hasDiv()) {
                cs.getText().setDiv(new XhtmlNode(NodeType.Element));
                cs.getText().getDiv().setName("div");
            }
        // if (ToolingExtensions.getOID(cs) == null)
        // throw new Exception("No OID on code system "+cs.getUrl());
        }
    }
}

Example 5 with Narrative

use of org.hl7.fhir.r5.model.Narrative in project kindling by HL7.

the class Publisher method generateConceptMap.

private void generateConceptMap(ConceptMap cm) throws Exception {
    String filename = cm.getUserString("path");
    RenderingContext lrc = page.getRc().copy().setLocalPrefix("").setTooCostlyNoteEmpty(PageProcessor.TOO_MANY_CODES_TEXT_EMPTY).setTooCostlyNoteNotEmpty(PageProcessor.TOO_MANY_CODES_TEXT_NOT_EMPTY);
    RendererFactory.factory(cm, lrc).render(cm);
    IParser json = new JsonParser().setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".json"));
    json.compose(s, cm);
    s.close();
    json = new JsonParser().setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".canonical.json"));
    json.compose(s, cm);
    s.close();
    String n = Utilities.changeFileExt(filename, "");
    jsonToXhtml(n, cm.getName(), resource2Json(cm), "conceptmap-instance", "Concept Map", null, wg("vocab"));
    ttlToXhtml(n, cm.getName(), resource2Ttl(cm), "conceptmap-instance", "Concept Map", null, wg("vocab"));
    IParser xml = new XmlParser().setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".xml"));
    xml.compose(s, cm);
    s.close();
    xml = new XmlParser().setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".canonical.xml"));
    xml.compose(s, cm);
    s.close();
    cloneToXhtml(n, cm.getName(), false, "conceptmap-instance", "Concept Map", null, wg("vocab"));
    // now, we create an html page from the narrative
    String narrative = new XhtmlComposer(XhtmlComposer.HTML).compose(cm.getText().getDiv());
    String html = TextFile.fileToString(page.getFolders().templateDir + "template-example.html").replace("<%example%>", narrative);
    html = page.processPageIncludes(Utilities.changeFileExt(filename, ".html"), html, "conceptmap-instance", null, null, null, "Concept Map", null, null, wg("vocab"));
    TextFile.stringToFile(html, page.getFolders().dstDir + Utilities.changeFileExt(filename, ".html"));
    conceptMapsFeed.getEntry().add(new BundleEntryComponent().setResource(cm).setFullUrl("http://hl7.org/fhir/" + cm.fhirType() + "/" + cm.getId()));
    page.getConceptMaps().see(cm, page.packageInfo());
    page.getHTMLChecker().registerFile(n + ".html", cm.getName(), HTMLLinkChecker.XHTML_TYPE, false);
}