Examples with HealthConcernBundleToDtoConverter org.hl7.gravity.refimpl.sdohexchange.dto.converter.HealthConcernBundleToDtoConverter used on opensource projects

Example 1 with HealthConcernBundleToDtoConverter

use of org.hl7.gravity.refimpl.sdohexchange.dto.converter.HealthConcernBundleToDtoConverter in project Gravity-SDOH-Exchange-RI by FHIR.

the class GoalBundleToDtoConverter method convert.

@Override
public List<GoalDto> convert(Bundle bundle) {
    List<GoalDto> result = FhirUtil.getFromBundle(bundle, Goal.class).stream().map(goal -> {
        GoalDto goalDto = new GoalDto();
        goalDto.setId(goal.getIdElement().getIdPart());
        if (goal.hasDescription() && goal.getDescription().hasText()) {
            goalDto.setName(goal.getDescription().getText());
        } else {
            goalDto.getErrors().add("Goal description.text not found. Name cannot be set.");
        }
        if (goal.hasAchievementStatus()) {
            goalDto.setAchievementStatus(GoalAchievement.fromCode(goal.getAchievementStatus().getCodingFirstRep().getCode()));
        } else {
            goalDto.getErrors().add("No achievement status available.");
        }
        // TODO reused from HealthConcernBundleToDtoConverter class. Refactor!
        Coding categoryCoding = FhirUtil.findCoding(goal.getCategory(), SDOHMappings.getInstance().getSystem());
        // TODO remove this in future. Fow now two different categories might be used before discussed.
        if (categoryCoding == null) {
            categoryCoding = FhirUtil.findCoding(goal.getCategory(), "http://hl7.org/fhir/us/sdoh-clinicalcare/CodeSystem/SDOHCC-CodeSystemTemporaryCodes");
        }
        if (categoryCoding == null) {
            goalDto.getErrors().add("SDOH category is not found.");
        } else {
            goalDto.setCategory(new CodingDto(categoryCoding.getCode(), categoryCoding.getDisplay()));
        }
        Optional<Coding> snomedCodeCodingOptional = findCode(goal.getDescription(), System.SNOMED);
        if (snomedCodeCodingOptional.isPresent()) {
            Coding snomedCodeCoding = snomedCodeCodingOptional.get();
            goalDto.setSnomedCode(new CodingDto(snomedCodeCoding.getCode(), snomedCodeCoding.getDisplay()));
        } else {
            goalDto.getErrors().add("SNOMED-CT code is not found.");
        }
        if (goal.hasExpressedBy()) {
            Reference expressedBy = goal.getExpressedBy();
            goalDto.setAddedBy(new ReferenceDto(expressedBy.getReferenceElement().getIdPart(), expressedBy.getDisplay()));
        } else {
            goalDto.getErrors().add("Goal expressedBy property is missing. addedBy will be null.");
        }
        goalDto.setStartDate(FhirUtil.toLocalDate(goal.getStartDateType()));
        // TODO this is invalid. To clarify!
        if (goal.getLifecycleStatus() == Goal.GoalLifecycleStatus.COMPLETED) {
            if (goal.hasStatusDate()) {
                goalDto.setEndDate(FhirUtil.toLocalDate(goal.getStatusDateElement()));
            } else {
                goalDto.getErrors().add("Goal statusDate must be set when the lifecycleStatus is COMPLETED. endDate will be null.");
            }
        }
        goalDto.setComments(goal.getNote().stream().map(annotationToDtoConverter::convert).collect(Collectors.toList()));
        goalDto.setProblems(goal.getAddresses().stream().filter(ref -> Condition.class.getSimpleName().equals(ref.getReferenceElement().getResourceType())).map(ref -> (Condition) ref.getResource()).map(cond -> new ConditionDto(cond.getIdElement().getIdPart(), codeableConceptToStringConverter.convert(cond.getCode()))).collect(Collectors.toList()));
        return goalDto;
    }).collect(Collectors.toList());
    // TODO refactor. method too long.
    // TODO refactor. Almost the same fragmen exists in a ProblemInfoBundleExtractor
    Map<String, GoalDto> idToDtoMap = result.stream().collect(Collectors.toMap(g -> g.getId(), Function.identity()));
    for (Task task : FhirUtil.getFromBundle(bundle, Task.class)) {
        if (!task.hasFocus() || !(task.getFocus().getResource() instanceof ServiceRequest)) {
            continue;
        }
        ServiceRequest sr = (ServiceRequest) task.getFocus().getResource();
        sr.getSupportingInfo().stream().filter(ref -> Goal.class.getSimpleName().equals(ref.getReferenceElement().getResourceType()) && idToDtoMap.containsKey(ref.getReferenceElement().getIdPart())).forEach(ref -> idToDtoMap.get(ref.getReferenceElement().getIdPart()).getTasks().add(new TaskInfoDto(task.getIdElement().getIdPart(), task.getDescription(), task.getStatus())));
    }
    return result;
}

Example 2 with HealthConcernBundleToDtoConverter

use of org.hl7.gravity.refimpl.sdohexchange.dto.converter.HealthConcernBundleToDtoConverter in project Gravity-SDOH-Exchange-RI by FHIR.

the class HealthConcernService method create.

public HealthConcernDto create(NewHealthConcernDto newHealthConcernDto, UserDto user) {
    Assert.notNull(SmartOnFhirContext.get().getPatient(), "Patient id cannot be null.");
    CurrentContextPrepareBundleFactory healthConcernPrepareBundleFactory = new CurrentContextPrepareBundleFactory(SmartOnFhirContext.get().getPatient(), user.getId());
    Bundle healthConcernRelatedResources = ehrClient.transaction().withBundle(healthConcernPrepareBundleFactory.createPrepareBundle()).execute();
    CurrentContextPrepareInfoHolder healthConcernPrepareInfoHolder = new CurrentContextPrepareBundleExtractor().extract(healthConcernRelatedResources);
    ConditionBundleFactory bundleFactory = new ConditionBundleFactory();
    bundleFactory.setName(newHealthConcernDto.getName());
    bundleFactory.setBasedOnText(newHealthConcernDto.getBasedOnText());
    String category = newHealthConcernDto.getCategory();
    bundleFactory.setCategory(sdohMappings.findCategoryCoding(category));
    bundleFactory.setConditionType(UsCoreConditionCategory.HEALTHCONCERN);
    bundleFactory.setIcdCode(sdohMappings.findCoding(category, Condition.class, System.ICD_10, newHealthConcernDto.getIcdCode()));
    bundleFactory.setSnomedCode(sdohMappings.findCoding(category, Condition.class, System.SNOMED, newHealthConcernDto.getSnomedCode()));
    bundleFactory.setPatient(healthConcernPrepareInfoHolder.getPatient());
    bundleFactory.setPractitioner(healthConcernPrepareInfoHolder.getPractitioner());
    Bundle healthConcernCreateBundle = ehrClient.transaction().withBundle(bundleFactory.createBundle()).execute();
    IdType healthConcernId = FhirUtil.getFromResponseBundle(healthConcernCreateBundle, Condition.class);
    Bundle responseBundle = searchHealthConcernQuery(ConditionClinicalStatus.ACTIVE).where(Condition.RES_ID.exactly().code(healthConcernId.getIdPart())).returnBundle(Bundle.class).execute();
    return new HealthConcernBundleToDtoConverter().convert(responseBundle).stream().findFirst().orElseThrow(() -> new HealthConcernCreateException("Health Concern is not found in the response bundle."));
}

Example 3 with HealthConcernBundleToDtoConverter

use of org.hl7.gravity.refimpl.sdohexchange.dto.converter.HealthConcernBundleToDtoConverter in project Gravity-SDOH-Exchange-RI by FHIR.

the class HealthConcernService method listResolved.

public List<HealthConcernDto> listResolved() {
    Assert.notNull(SmartOnFhirContext.get().getPatient(), "Patient id cannot be null.");
    Bundle responseBundle = searchHealthConcernQuery(ConditionClinicalStatus.RESOLVED).include(Condition.INCLUDE_EVIDENCE_DETAIL).include(Observation.INCLUDE_DERIVED_FROM.setRecurse(true)).returnBundle(Bundle.class).execute();
    responseBundle = addQuestionnairesToConditionBundle(responseBundle);
    return new HealthConcernBundleToDtoConverter().convert(responseBundle);
}

Example 4 with HealthConcernBundleToDtoConverter

use of org.hl7.gravity.refimpl.sdohexchange.dto.converter.HealthConcernBundleToDtoConverter in project Gravity-SDOH-Exchange-RI by FHIR.

the class HealthConcernService method listActive.

public List<HealthConcernDto> listActive() {
    Assert.notNull(SmartOnFhirContext.get().getPatient(), "Patient id cannot be null.");
    Bundle responseBundle = searchHealthConcernQuery(ConditionClinicalStatus.ACTIVE).include(Condition.INCLUDE_EVIDENCE_DETAIL).include(Observation.INCLUDE_DERIVED_FROM.setRecurse(true)).returnBundle(Bundle.class).execute();
    responseBundle = addQuestionnairesToConditionBundle(responseBundle);
    return new HealthConcernBundleToDtoConverter().convert(responseBundle);
}