Examples with System org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System used on opensource projects

Example 1 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project beneficiary-fhir-data by CMSgov.

the class TransformerUtils method addExtensionValueQuantity.

/**
 * Adds an {@link Extension} to the specified {@link DomainResource}. {@link Extension#getValue()}
 * will be set to a {@link Quantity} with the specified system and value.
 *
 * @param fhirElement the FHIR element to add the {@link Extension} to
 * @param extensionUrl the {@link Extension#getUrl()} to use
 * @param quantitySystem the {@link Quantity#getSystem()} to use
 * @param quantityValue the {@link Quantity#getValue()} to use
 */
static void addExtensionValueQuantity(IBaseHasExtensions fhirElement, String extensionUrl, String quantitySystem, BigDecimal quantityValue) {
    IBaseExtension<?, ?> extension = fhirElement.addExtension();
    extension.setUrl(extensionUrl);
    extension.setValue(new Quantity().setSystem(extensionUrl).setValue(quantityValue));
// CodeableConcept codeableConcept = new CodeableConcept();
// extension.setValue(codeableConcept);
// 
// Coding coding = codeableConcept.addCoding();
// coding.setSystem(codingSystem).setCode(codingCode);
}

Example 2 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project beneficiary-fhir-data by CMSgov.

the class TransformerUtilsV2 method mapEobType.

/**
 * maps a blue button claim type to a FHIR claim type
 *
 * @param eob the {@link CodeableConcept} that will get remapped
 * @param blueButtonClaimType the blue button {@link ClaimTypeV2} we are mapping from
 * @param ccwNearLineRecordIdCode if present, the blue button near line id code {@link
 *     Optional}<{@link Character}> gets remapped to a ccw record id code
 * @param ccwClaimTypeCode if present, the blue button claim type code {@link Optional}<{@link
 *     String}> gets remapped to a nch claim type code
 */
static void mapEobType(ExplanationOfBenefit eob, ClaimTypeV2 blueButtonClaimType, Optional<Character> ccwNearLineRecordIdCode, Optional<String> ccwClaimTypeCode) {
    // NCH_CLM_TYPE_CD => ExplanationOfBenefit.type.coding
    if (ccwClaimTypeCode.isPresent()) {
        eob.getType().addCoding(createCoding(eob, CcwCodebookVariable.NCH_CLM_TYPE_CD, ccwClaimTypeCode));
    }
    // This Coding MUST always be present as it's the only one we can definitely map
    // for all 8 of our claim types.
    // EOB Type => ExplanationOfBenefit.type.coding
    eob.getType().addCoding().setSystem(TransformerConstants.CODING_SYSTEM_BBAPI_EOB_TYPE).setCode(blueButtonClaimType.name());
    // Map a Coding for FHIR's ClaimType coding system, if we can.
    org.hl7.fhir.r4.model.codesystems.ClaimType fhirClaimType;
    switch(blueButtonClaimType) {
        case PDE:
            fhirClaimType = org.hl7.fhir.r4.model.codesystems.ClaimType.PHARMACY;
            break;
        case INPATIENT:
        case OUTPATIENT:
        case HOSPICE:
        case SNF:
        case DME:
            fhirClaimType = org.hl7.fhir.r4.model.codesystems.ClaimType.INSTITUTIONAL;
            break;
        case CARRIER:
        case HHA:
            fhirClaimType = org.hl7.fhir.r4.model.codesystems.ClaimType.PROFESSIONAL;
            break;
        default:
            // All options on ClaimTypeV2 are covered above, but this is there to appease linter
            throw new BadCodeMonkeyException("No match found for ClaimTypeV2");
    }
    // Claim Type => ExplanationOfBenefit.type.coding
    if (fhirClaimType != null) {
        eob.getType().addCoding(new Coding(fhirClaimType.getSystem(), fhirClaimType.toCode(), fhirClaimType.getDisplay()));
    }
    // NCH_NEAR_LINE_REC_IDENT_CD => ExplanationOfBenefit.extension
    if (ccwNearLineRecordIdCode.isPresent()) {
        eob.addExtension(createExtensionCoding(eob, CcwCodebookVariable.NCH_NEAR_LINE_REC_IDENT_CD, ccwNearLineRecordIdCode));
    }
}

Example 3 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project beneficiary-fhir-data by CMSgov.

the class PatientResourceProvider method searchByIdentifier.

/**
 * Adds support for the FHIR "search" operation for {@link Patient}s, allowing users to search by
 * {@link Patient#getIdentifier()}. Specifically, the following criteria are supported:
 *
 * <ul>
 *   <li>Matching a {@link Beneficiary#getHicn()} hash value: when {@link TokenParam#getSystem()}
 *       matches one of the {@link #SUPPORTED_HASH_IDENTIFIER_SYSTEMS} entries.
 * </ul>
 *
 * <p>Searches that don't match one of the above forms are not supported.
 *
 * <p>The {@link Search} annotation indicates that this method supports the search operation.
 * There may be many different methods annotated with this {@link Search} annotation, to support
 * many different search criteria.
 *
 * @param identifier an {@link Identifier} {@link TokenParam} for the {@link
 *     Patient#getIdentifier()} to try and find a matching {@link Patient} for
 * @param startIndex an {@link OptionalParam} for the startIndex (or offset) used to determine
 *     pagination
 * @param lastUpdated an {@link OptionalParam} to filter the results based on the passed date
 *     range
 * @param requestDetails a {@link RequestDetails} containing the details of the request URL, used
 *     to parse out pagination values
 * @return Returns a {@link List} of {@link Patient}s, which may contain multiple matching
 *     resources, or may also be empty.
 */
@Search
@Trace
public Bundle searchByIdentifier(@RequiredParam(name = Patient.SP_IDENTIFIER) @Description(shortDefinition = "The patient identifier to search for") TokenParam identifier, @OptionalParam(name = "startIndex") @Description(shortDefinition = "The offset used for result pagination") String startIndex, @OptionalParam(name = "_lastUpdated") @Description(shortDefinition = "Include resources last updated in the given range") DateRangeParam lastUpdated, RequestDetails requestDetails) {
    if (identifier.getQueryParameterQualifier() != null)
        throw new InvalidRequestException("Unsupported query parameter qualifier: " + identifier.getQueryParameterQualifier());
    if (!SUPPORTED_HASH_IDENTIFIER_SYSTEMS.contains(identifier.getSystem()))
        throw new InvalidRequestException("Unsupported identifier system: " + identifier.getSystem());
    RequestHeaders requestHeader = RequestHeaders.getHeaderWrapper(requestDetails);
    Operation operation = new Operation(Operation.Endpoint.V1_PATIENT);
    operation.setOption("by", "identifier");
    requestHeader.getNVPairs().forEach((n, v) -> operation.setOption(n, v.toString()));
    operation.setOption("_lastUpdated", Boolean.toString(lastUpdated != null && !lastUpdated.isEmpty()));
    operation.publishOperationName();
    List<IBaseResource> patients;
    try {
        Patient patient;
        switch(identifier.getSystem()) {
            case TransformerConstants.CODING_BBAPI_BENE_HICN_HASH:
            case TransformerConstants.CODING_BBAPI_BENE_HICN_HASH_OLD:
                patient = queryDatabaseByHicnHash(identifier.getValue(), requestHeader);
                break;
            case TransformerConstants.CODING_BBAPI_BENE_MBI_HASH:
                patient = queryDatabaseByMbiHash(identifier.getValue(), requestHeader);
                break;
            default:
                throw new InvalidRequestException("Unsupported identifier system: " + identifier.getSystem());
        }
        patients = QueryUtils.isInRange(patient.getMeta().getLastUpdated().toInstant(), lastUpdated) ? Collections.singletonList(patient) : Collections.emptyList();
    } catch (NoResultException e) {
        patients = new LinkedList<>();
    }
    OffsetLinkBuilder paging = new OffsetLinkBuilder(requestDetails, "/Patient?");
    Bundle bundle = TransformerUtils.createBundle(paging, patients, loadedFilterManager.getTransactionTime());
    return bundle;
}

Example 4 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project beneficiary-fhir-data by CMSgov.

the class CoverageTransformer method transformPartA.

/**
 * @param metricRegistry the {@link MetricRegistry} to use
 * @param beneficiary the {@link Beneficiary} to generate a {@link MedicareSegment#PART_A} {@link
 *     Coverage} resource for
 * @return {@link MedicareSegment#PART_A} {@link Coverage} resource for the specified {@link
 *     Beneficiary}
 */
private static Coverage transformPartA(MetricRegistry metricRegistry, Beneficiary beneficiary) {
    Timer.Context timer = metricRegistry.timer(MetricRegistry.name(CoverageTransformer.class.getSimpleName(), "transform", "part_a")).time();
    Objects.requireNonNull(beneficiary);
    Coverage coverage = new Coverage();
    coverage.setId(TransformerUtils.buildCoverageId(MedicareSegment.PART_A, beneficiary));
    if (beneficiary.getPartATerminationCode().isPresent() && beneficiary.getPartATerminationCode().get().equals('0'))
        coverage.setStatus(CoverageStatus.ACTIVE);
    else
        coverage.setStatus(CoverageStatus.CANCELLED);
    if (beneficiary.getMedicareCoverageStartDate().isPresent()) {
        TransformerUtils.setPeriodStart(coverage.getPeriod(), beneficiary.getMedicareCoverageStartDate().get());
    }
    // deh start
    coverage.addContract().setId("ptc-contract1");
    Contract newContract = new Contract();
    LocalDate localDate = LocalDate.now();
    newContract.setIdentifier(new Identifier().setSystem("part C System").setValue("contract 5555"));
    newContract.setApplies((new Period().setStart((TransformerUtils.convertToDate(localDate)), TemporalPrecisionEnum.DAY)));
    coverage.addContained(newContract);
    coverage.addContract(TransformerUtils.referenceCoverage("contract1 reference", MedicareSegment.PART_A));
    coverage.getGrouping().setSubGroup(TransformerConstants.COVERAGE_PLAN).setSubPlan(TransformerConstants.COVERAGE_PLAN_PART_A);
    coverage.setType(TransformerUtils.createCodeableConcept(TransformerConstants.COVERAGE_PLAN, TransformerConstants.COVERAGE_PLAN_PART_A));
    coverage.setBeneficiary(TransformerUtils.referencePatient(beneficiary));
    if (beneficiary.getMedicareEnrollmentStatusCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.MS_CD, beneficiary.getMedicareEnrollmentStatusCode()));
    }
    if (beneficiary.getEntitlementCodeOriginal().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.OREC, beneficiary.getEntitlementCodeOriginal()));
    }
    if (beneficiary.getEntitlementCodeCurrent().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.CREC, beneficiary.getEntitlementCodeCurrent()));
    }
    if (beneficiary.getEndStageRenalDiseaseCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.ESRD_IND, beneficiary.getEndStageRenalDiseaseCode()));
    }
    if (beneficiary.getPartATerminationCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.A_TRM_CD, beneficiary.getPartATerminationCode()));
    }
    // The reference year of the enrollment data
    if (beneficiary.getBeneEnrollmentReferenceYear().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionDate(CcwCodebookVariable.RFRNC_YR, beneficiary.getBeneEnrollmentReferenceYear()));
    }
    // Monthly Medicare-Medicaid dual eligibility codes
    if (beneficiary.getMedicaidDualEligibilityJanCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_01, beneficiary.getMedicaidDualEligibilityJanCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityFebCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_02, beneficiary.getMedicaidDualEligibilityFebCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityMarCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_03, beneficiary.getMedicaidDualEligibilityMarCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityAprCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_04, beneficiary.getMedicaidDualEligibilityAprCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityMayCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_05, beneficiary.getMedicaidDualEligibilityMayCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityJunCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_06, beneficiary.getMedicaidDualEligibilityJunCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityJulCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_07, beneficiary.getMedicaidDualEligibilityJulCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityAugCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_08, beneficiary.getMedicaidDualEligibilityAugCode()));
    }
    if (beneficiary.getMedicaidDualEligibilitySeptCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_09, beneficiary.getMedicaidDualEligibilitySeptCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityOctCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_10, beneficiary.getMedicaidDualEligibilityOctCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityNovCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_11, beneficiary.getMedicaidDualEligibilityNovCode()));
    }
    if (beneficiary.getMedicaidDualEligibilityDecCode().isPresent()) {
        coverage.addExtension(TransformerUtils.createExtensionCoding(coverage, CcwCodebookVariable.DUAL_12, beneficiary.getMedicaidDualEligibilityDecCode()));
    }
    transformEntitlementBuyInIndicators(coverage, beneficiary);
    TransformerUtils.setLastUpdated(coverage, beneficiary.getLastUpdated());
    timer.stop();
    return coverage;
}

Example 5 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project beneficiary-fhir-data by CMSgov.

the class AbstractSamhsaMatcherTest method samhsaCodingTest.

/**
 * Parameterized tests for {@link AbstractSamhsaMatcher#isSamhsaCoding(CodeableConcept, Predicate,
 * Predicate)}
 *
 * <p>The target method takes a {@link CodeableConcept} and two {@link Predicate}s (one for ICD9
 * checks and one for ICD10 checks). The test checks each combination of coding system/predicate
 * result.
 */
@ParameterizedTest(name = "{index}: System(\"{0}\"), isSamsaICD9(\"{2}\"), isSamsaICD10(\"{3}\"), Expected(\"{4}\")")
@MethodSource
public void samhsaCodingTest(String system, CodeableConcept concept, boolean isIcd9Code, boolean isIcd10Code, boolean expectedResult, String errorMessage) {
    Coding mockCoding = mock(Coding.class);
    doReturn(system).when(mockCoding).getSystem();
    doReturn("some code").when(mockCoding).getCode();
    Optional.ofNullable(concept).ifPresent(c -> doReturn(List.of(mockCoding)).when(c).getCoding());
    // unchecked - This is ok for making a mock.
    // noinspection unchecked
    AbstractSamhsaMatcher<IBaseResource> matcherSpy = spy(AbstractSamhsaMatcher.class);
    doReturn(false).when(matcherSpy).isSamhsaCptCode(any(Coding.class));
    // unchecked - This is ok for making a mock.
    // noinspection unchecked
    Predicate<Coding> mockPredicateIcd9 = mock(Predicate.class);
    doReturn(isIcd9Code).when(mockPredicateIcd9).test(mockCoding);
    // unchecked - This is ok for making a mock.
    // noinspection unchecked
    Predicate<Coding> mockPredicateIcd10 = mock(Predicate.class);
    doReturn(isIcd10Code).when(mockPredicateIcd10).test(mockCoding);
    assertEquals(expectedResult, matcherSpy.isSamhsaCoding(concept, mockPredicateIcd9, mockPredicateIcd10), errorMessage);
}