Examples with PatientInfo org.hl7.gravity.refimpl.sdohexchange.info.PatientInfo used on opensource projects

Example 1 with PatientInfo

use of org.hl7.gravity.refimpl.sdohexchange.info.PatientInfo in project beneficiary-fhir-data by CMSgov.

the class AbstractTransformerV2 method createHumanNameFrom.

protected static List<HumanName> createHumanNameFrom(PatientInfo patientInfo) {
    List<HumanName> names;
    // If no names, don't set anything
    if (patientInfo.getFirstName() != null || patientInfo.getLastName() != null || patientInfo.getMiddleName() != null) {
        names = new ArrayList<>();
        List<StringType> givens;
        // If no givens, don't set any
        if (patientInfo.getFirstName() != null || patientInfo.getLastName() != null) {
            givens = new ArrayList<>();
            if (patientInfo.getFirstName() != null) {
                givens.add(new StringType(patientInfo.getFirstName()));
            }
            if (patientInfo.getMiddleName() != null) {
                givens.add(new StringType(patientInfo.getMiddleName()));
            }
        } else {
            givens = null;
        }
        names.add(new HumanName().setFamily(patientInfo.getLastName()).setGiven(givens));
    } else {
        names = null;
    }
    return names;
}

Example 2 with PatientInfo

use of org.hl7.gravity.refimpl.sdohexchange.info.PatientInfo in project Gravity-SDOH-Exchange-RI by FHIR.

the class PatientToDtoConverter method convert.

@Override
public PatientDto convert(PatientInfo patientInfo) {
    Patient patient = patientInfo.getPatient();
    PatientDto patientDto = new PatientDto();
    patientDto.setId(patient.getIdElement().getIdPart());
    patientDto.setName(patient.getNameFirstRep().getNameAsSingleString());
    // Get Date of Birth and Age
    if (patient.hasBirthDate()) {
        LocalDate dob = FhirUtil.toLocalDate(patient.getBirthDateElement());
        patientDto.setDob(dob);
        patientDto.setAge(Period.between(dob, LocalDate.now(ZoneOffset.UTC)).getYears());
    }
    // Get gender
    patientDto.setGender(ObjectUtils.defaultIfNull(patient.getGender(), Enumerations.AdministrativeGender.UNKNOWN).getDisplay());
    // Get communication language
    patientDto.setLanguage(patient.getCommunication().stream().filter(Patient.PatientCommunicationComponent::getPreferred).map(c -> c.getLanguage().getCodingFirstRep()).map(c -> c.getDisplay() != null ? c.getDisplay() : c.getCode()).filter(Objects::nonNull).findFirst().orElse(null));
    // Get Address full String. No need to compose it on UI side.
    patientDto.setAddress(patient.getAddress().stream().filter(a -> (patient.getAddress().size() == 1 && a.getUse() == null) || Address.AddressUse.HOME.equals(a.getUse())).map(this::convertAddress).findFirst().orElse(null));
    List<ContactPoint> telecom = patient.getTelecom();
    // Get phone numbers
    patientDto.getPhones().addAll(telecom.stream().filter(t -> ContactPoint.ContactPointSystem.PHONE.equals(t.getSystem())).map(cp -> {
        String display = cp.getUse() == null ? null : cp.getUse().getDisplay();
        return new PhoneDto(display, cp.getValue());
    }).collect(Collectors.toList()));
    // Get email addreses
    patientDto.getEmails().addAll(telecom.stream().filter(t -> ContactPoint.ContactPointSystem.EMAIL.equals(t.getSystem())).map(cp -> {
        String display = cp.getUse() == null ? null : cp.getUse().getDisplay();
        return new EmailDto(display, cp.getValue());
    }).collect(Collectors.toList()));
    if (patientInfo.getEmployment() != null) {
        String employmentStatus = patientInfo.getEmployment().getValueCodeableConcept().getCodingFirstRep().getDisplay();
        patientDto.setEmploymentStatus(employmentStatus);
    }
    if (patientInfo.getEducation() != null) {
        String education = patientInfo.getEducation().getValueCodeableConcept().getCodingFirstRep().getDisplay();
        patientDto.setEducation(education);
    }
    // Get race
    Extension race = patient.getExtensionByUrl(UsCorePatientExtensions.RACE);
    patientDto.setRace(convertExtension(race));
    // Get ethnicity
    Extension ethnicity = patient.getExtensionByUrl(UsCorePatientExtensions.ETHNICITY);
    patientDto.setEthnicity(convertExtension(ethnicity));
    // Get marital status
    Coding ms = patient.getMaritalStatus().getCodingFirstRep();
    patientDto.setMaritalStatus(Optional.ofNullable(ms.getDisplay()).orElse(Optional.ofNullable(ms.getCode()).orElse(null)));
    patientDto.getInsurances().addAll(convertPayors(patientInfo.getPayors()));
    return patientDto;
}

Example 3 with PatientInfo

use of org.hl7.gravity.refimpl.sdohexchange.info.PatientInfo in project MobileAccessGateway by i4mi.

the class Iti67ResponseConverter method translateToFhir.

@Override
public List<DocumentReference> translateToFhir(QueryResponse input, Map<String, Object> parameters) {
    ArrayList<DocumentReference> list = new ArrayList<DocumentReference>();
    if (input != null && Status.SUCCESS.equals(input.getStatus())) {
        // process relationship association
        Map<String, List<DocumentReferenceRelatesToComponent>> relatesToMapping = new HashMap<String, List<DocumentReferenceRelatesToComponent>>();
        for (Association association : input.getAssociations()) {
            // Relationship type -> relatesTo.code code [1..1]
            // relationship reference -> relatesTo.target Reference(DocumentReference)
            String source = association.getSourceUuid();
            String target = association.getTargetUuid();
            AssociationType type = association.getAssociationType();
            DocumentReferenceRelatesToComponent relatesTo = new DocumentReferenceRelatesToComponent();
            if (type != null)
                switch(type) {
                    case APPEND:
                        relatesTo.setCode(DocumentRelationshipType.APPENDS);
                        break;
                    case REPLACE:
                        relatesTo.setCode(DocumentRelationshipType.REPLACES);
                        break;
                    case TRANSFORM:
                        relatesTo.setCode(DocumentRelationshipType.TRANSFORMS);
                        break;
                    case SIGNS:
                        relatesTo.setCode(DocumentRelationshipType.SIGNS);
                        break;
                }
            relatesTo.setTarget(new Reference().setReference("urn:oid:" + target));
            if (!relatesToMapping.containsKey(source))
                relatesToMapping.put(source, new ArrayList<DocumentReferenceRelatesToComponent>());
            relatesToMapping.get(source).add(relatesTo);
        }
        if (input.getDocumentEntries() != null) {
            for (DocumentEntry documentEntry : input.getDocumentEntries()) {
                DocumentReference documentReference = new DocumentReference();
                // FIXME do we need to cache this id in
                documentReference.setId(noUuidPrefix(documentEntry.getEntryUuid()));
                // relation to the DocumentManifest itself
                // for
                list.add(documentReference);
                // limitedMetadata -> meta.profile canonical [0..*]
                if (documentEntry.isLimitedMetadata()) {
                    documentReference.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE_MHD_Query_Comprehensive_DocumentReference");
                } else {
                    documentReference.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE_MHD_Comprehensive_DocumentManifest");
                }
                // uniqueId -> masterIdentifier Identifier [0..1] [1..1]
                if (documentEntry.getUniqueId() != null) {
                    documentReference.setMasterIdentifier((new Identifier().setValue("urn:oid:" + documentEntry.getUniqueId())));
                }
                // DocumentReference.identifier. use shall be ‘official’
                if (documentEntry.getEntryUuid() != null) {
                    documentReference.addIdentifier((new Identifier().setSystem("urn:ietf:rfc:3986").setValue(asUuid(documentEntry.getEntryUuid()))).setUse(IdentifierUse.OFFICIAL));
                }
                // Other status values are allowed but are not defined in this mapping to XDS.
                if (AvailabilityStatus.APPROVED.equals(documentEntry.getAvailabilityStatus())) {
                    documentReference.setStatus(DocumentReferenceStatus.CURRENT);
                }
                if (AvailabilityStatus.DEPRECATED.equals(documentEntry.getAvailabilityStatus())) {
                    documentReference.setStatus(DocumentReferenceStatus.SUPERSEDED);
                }
                // contentTypeCode -> type CodeableConcept [0..1]
                if (documentEntry.getTypeCode() != null) {
                    documentReference.setType(transform(documentEntry.getTypeCode()));
                }
                // classCode -> category CodeableConcept [0..*]
                if (documentEntry.getClassCode() != null) {
                    documentReference.addCategory((transform(documentEntry.getClassCode())));
                }
                // representing the XDS Affinity Domain Patient.
                if (documentEntry.getPatientId() != null) {
                    Identifiable patient = documentEntry.getPatientId();
                    documentReference.setSubject(transformPatient(patient));
                }
                // creationTime -> date instant [0..1]
                if (documentEntry.getCreationTime() != null) {
                    documentReference.setDate(Date.from(documentEntry.getCreationTime().getDateTime().toInstant()));
                }
                // PractitionerRole| Organization| Device| Patient| RelatedPerson) [0..*]
                if (documentEntry.getAuthors() != null) {
                    for (Author author : documentEntry.getAuthors()) {
                        documentReference.addAuthor(transformAuthor(author));
                    }
                }
                // legalAuthenticator -> authenticator Note 1
                // Reference(Practitioner|Practition erRole|Organization [0..1]
                Person person = documentEntry.getLegalAuthenticator();
                if (person != null) {
                    Practitioner practitioner = transformPractitioner(person);
                    documentReference.setAuthenticator((Reference) new Reference().setResource(practitioner));
                }
                // Relationship Association -> relatesTo [0..*]
                // [1..1]
                documentReference.setRelatesTo(relatesToMapping.get(documentEntry.getEntryUuid()));
                // title -> description string [0..1]
                if (documentEntry.getTitle() != null) {
                    documentReference.setDescription(documentEntry.getTitle().getValue());
                }
                // DocumentReference itself.
                if (documentEntry.getConfidentialityCodes() != null) {
                    documentReference.addSecurityLabel(transform(documentEntry.getConfidentialityCodes()));
                }
                DocumentReferenceContentComponent content = documentReference.addContent();
                Attachment attachment = new Attachment();
                content.setAttachment(attachment);
                // mimeType -> content.attachment.contentType [1..1] code [0..1]
                if (documentEntry.getMimeType() != null) {
                    attachment.setContentType(documentEntry.getMimeType());
                }
                // languageCode -> content.attachment.language code [0..1]
                if (documentEntry.getLanguageCode() != null) {
                    attachment.setLanguage(documentEntry.getLanguageCode());
                }
                // retrievable location of the document -> content.attachment.url uri
                // [0..1] [1..1
                // has to defined, for the PoC we define
                // $host:port/camel/$repositoryid/$uniqueid
                attachment.setUrl(config.getUriMagXdsRetrieve() + "?uniqueId=" + documentEntry.getUniqueId() + "&repositoryUniqueId=" + documentEntry.getRepositoryUniqueId());
                // size -> content.attachment.size integer [0..1] The size is calculated
                if (documentEntry.getSize() != null) {
                    attachment.setSize(documentEntry.getSize().intValue());
                }
                // on the data prior to base64 encoding, if the data is base64 encoded.
                if (documentEntry.getHash() != null) {
                    attachment.setHash(Hex.fromHex(documentEntry.getHash()));
                }
                // comments -> content.attachment.title string [0..1]
                if (documentEntry.getComments() != null) {
                    attachment.setTitle(documentEntry.getComments().getValue());
                }
                // TcreationTime -> content.attachment.creation dateTime [0..1]
                if (documentEntry.getCreationTime() != null) {
                    attachment.setCreation(Date.from(documentEntry.getCreationTime().getDateTime().toInstant()));
                }
                // formatCode -> content.format Coding [0..1]
                if (documentEntry.getFormatCode() != null) {
                    content.setFormat(transform(documentEntry.getFormatCode()).getCodingFirstRep());
                }
                DocumentReferenceContextComponent context = new DocumentReferenceContextComponent();
                documentReference.setContext(context);
                // referenceIdList -> context.encounter Reference(Encounter) [0..*] When
                // referenceIdList contains an encounter, and a FHIR Encounter is available, it
                // may be referenced.
                // Map to context.related
                List<ReferenceId> refIds = documentEntry.getReferenceIdList();
                if (refIds != null) {
                    for (ReferenceId refId : refIds) {
                        context.getRelated().add(transform(refId));
                    }
                }
                // eventCodeList -> context.event CodeableConcept [0..*]
                if (documentEntry.getEventCodeList() != null) {
                    documentReference.getContext().setEvent(transformMultiple(documentEntry.getEventCodeList()));
                }
                // serviceStartTime serviceStopTime -> context.period Period [0..1]
                if (documentEntry.getServiceStartTime() != null || documentEntry.getServiceStopTime() != null) {
                    Period period = new Period();
                    period.setStartElement(transform(documentEntry.getServiceStartTime()));
                    period.setEndElement(transform(documentEntry.getServiceStopTime()));
                    documentReference.getContext().setPeriod(period);
                }
                // [0..1]
                if (documentEntry.getHealthcareFacilityTypeCode() != null) {
                    context.setFacilityType(transform(documentEntry.getHealthcareFacilityTypeCode()));
                }
                // practiceSettingCode -> context.practiceSetting CodeableConcept [0..1]
                if (documentEntry.getPracticeSettingCode() != null) {
                    context.setPracticeSetting(transform(documentEntry.getPracticeSettingCode()));
                }
                // sourcePatientId and sourcePatientInfo -> context.sourcePatientInfo
                // Reference(Patient) [0..1] Contained Patient Resource with
                // Patient.identifier.use element set to ‘usual’.
                Identifiable sourcePatientId = documentEntry.getSourcePatientId();
                PatientInfo sourcePatientInfo = documentEntry.getSourcePatientInfo();
                Patient sourcePatient = new Patient();
                if (sourcePatientId != null) {
                    sourcePatient.addIdentifier((new Identifier().setSystem("urn:oid:" + sourcePatientId.getAssigningAuthority().getUniversalId()).setValue(sourcePatientId.getId())).setUse(IdentifierUse.OFFICIAL));
                }
                if (sourcePatientInfo != null) {
                    sourcePatient.setBirthDateElement(transformToDate(sourcePatientInfo.getDateOfBirth()));
                    String gender = sourcePatientInfo.getGender();
                    if (gender != null) {
                        switch(gender) {
                            case "F":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.FEMALE);
                                break;
                            case "M":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.MALE);
                                break;
                            case "U":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.UNKNOWN);
                                break;
                            case "A":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.OTHER);
                                break;
                        }
                    }
                    ListIterator<Name> names = sourcePatientInfo.getNames();
                    while (names.hasNext()) {
                        Name name = names.next();
                        sourcePatient.addName(transform(name));
                    }
                    ListIterator<Address> addresses = sourcePatientInfo.getAddresses();
                    while (addresses.hasNext()) {
                        Address address = addresses.next();
                        if (address != null)
                            sourcePatient.addAddress(transform(address));
                    }
                }
                if (sourcePatientId != null || sourcePatientInfo != null) {
                    context.getSourcePatientInfo().setResource(sourcePatient);
                }
            }
        }
    } else {
        processError(input);
    }
    return list;
}

Example 4 with PatientInfo

use of org.hl7.gravity.refimpl.sdohexchange.info.PatientInfo in project beneficiary-fhir-data by CMSgov.

the class FissClaimResponseTransformerV2 method getContainedPatient.

private static Resource getContainedPatient(PreAdjFissClaim claimGroup) {
    Optional<PreAdjFissPayer> optional = claimGroup.getPayers().stream().filter(p -> p.getPayerType() == PreAdjFissPayer.PayerType.BeneZ).findFirst();
    Patient patient;
    if (optional.isPresent()) {
        PreAdjFissPayer benePayer = optional.get();
        patient = getContainedPatient(claimGroup.getMbi(), new PatientInfo(benePayer.getBeneFirstName(), benePayer.getBeneLastName(), ifNotNull(benePayer.getBeneMidInit(), s -> s.charAt(0) + "."), benePayer.getBeneDob(), benePayer.getBeneSex()));
    } else {
        patient = getContainedPatient(claimGroup.getMbi(), null);
    }
    return patient;
}

Example 5 with PatientInfo

use of org.hl7.gravity.refimpl.sdohexchange.info.PatientInfo in project beneficiary-fhir-data by CMSgov.

the class FissClaimTransformerV2 method getContainedPatient.

private static Resource getContainedPatient(PreAdjFissClaim claimGroup) {
    Optional<PreAdjFissPayer> optional = claimGroup.getPayers().stream().filter(p -> p.getPayerType() == PreAdjFissPayer.PayerType.BeneZ).findFirst();
    Patient patient;
    if (optional.isPresent()) {
        PreAdjFissPayer benePayer = optional.get();
        patient = getContainedPatient(claimGroup.getMbi(), new PatientInfo(benePayer.getBeneFirstName(), benePayer.getBeneLastName(), ifNotNull(benePayer.getBeneMidInit(), s -> s.charAt(0) + "."), benePayer.getBeneDob(), benePayer.getBeneSex()));
    } else {
        patient = getContainedPatient(claimGroup.getMbi(), null);
    }
    return patient;
}