Examples with System org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System used on opensource projects

Example 56 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestRateQuantityRXO.

@Test
void dosageInstructionTestRateQuantityRXO() {
    // Test dosageInstruction.rateQuantity where RXO.21 exists and RXO.17 does not exist -> use RXO segment, no range
    String hl7message = "MSH|^~\\\\&|||||20210101000000||OMP^O09|MSGID|T|2.6\n" + "PID|||1234||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||||||||||||||||||||||||||||||||||||||||||||\n" + "ORC|OP||||||||||||||||||||||\n" + // RXO.22.3 purposely empty to check that default system is used
    "RXO|00054418425^Dexamethasone 4 MG Oral Tablet^NDC||||||||||||||||||||6|PC||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Quantity rateQuantity = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getRateQuantity();
    // dosageInstruction.doseAndRate.rateQuantity RXO.21
    // RXO.21
    assertThat(rateQuantity.getValue()).hasToString("6.0");
    // RXO.22.1
    assertThat(rateQuantity.getUnit()).isEqualTo("PC");
    // default
    assertThat(rateQuantity.getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, and Patient
    assertThat(e).hasSize(2);
}

Example 57 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestRateQuantityRXE.

@Test
void dosageInstructionTestRateQuantityRXE() {
    // Test dosageInstruction.rateQuantity where RXE.23 exists and RXE.22 does not exist -> use RXE segment, no range
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "ORC|NW|||||E|||||||||||||||||||||||I\n" + "RXE||DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|||||||||||||||||||" + // RXE.24.3 purposely empty to check that default system is used
    "||7|PC^^http://unitsofmeasure.org||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Quantity rateQuantity = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getRateQuantity();
    // dosageInstruction.doseAndRate.rateQuantity RXE.23
    // RXO.23
    assertThat(rateQuantity.getValue()).hasToString("7.0");
    // RXO.24.1
    assertThat(rateQuantity.getUnit()).isEqualTo("PC");
    // RXO.24.3
    assertThat(rateQuantity.getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, and Patient
    assertThat(e).hasSize(2);
}

Example 58 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method testMedicationRequestReasonCode.

@Test
void testMedicationRequestReasonCode() {
    // Reason code from RXO.20, should ignore ORC.16
    String hl7message = "MSH|^~\\&||||||S1|PPR^PC1||T|2.6|||||||||\r" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\r" + "PRB|AD|20141015103243|15777000^Prediabetes (disorder)^SNM|654321^^OtherSoftware.ProblemOID|||||\r" + // ORC.16 purposely present to be ignored because RXO.20 is present
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\r" + "OBR|1|||555|||20170825010500||||||||||||||||||F\r" + // RXO.2 through RXO.35 otherwise purposely empty
    "RXO|65862-063-01^METOPROLOL TARTRATE^NDC|||||||||||||||||||134006\r";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // RXO.20.1
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("134006");
    // No RXO.20.2
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isNull();
    // No RXO.20.3
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isNull();
    // Reason code from RXE.27. Ignores ORC.16.
    hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.16 purposely present to be ignored because RXE.27 is present
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\n" + // RXE.6 through RXE.44 otherwise purposely empty
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL||||||||||||||||||||||Wheezing^Wheezing^PRN|||||||||||||\r";
    e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("Wheezing");
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("Wheezing");
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isEqualTo("urn:id:PRN");
    // Reason code from ORC.16 (when RXE.27 is not present)
    hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.16 to reason code
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\n" + // RXE.6 through RXE.44 purposely empty
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL|||||||||||||||||||||||||||||||||||\n";
    e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // ORC.16.1
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("4338008");
    // ORC.16.2
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("Wheezing");
    // ORC.16.3 (unknown system)
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isEqualTo("urn:id:PRN");
}

Example 59 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method medicationRequestIdentifierTest3.

@Test
void medicationRequestIdentifierTest3() throws IOException {
    // Test: Visit number from MSH-7, extID from RXE-2
    String medicationRequest = "MSH|^~\\&|PROSLOV|MYHOSPITAL|WHIA|IBM|20170215080000||OMP^O09|MSGID005520|T|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "PID|1||000054321^^^MRN\r" + "PV1||I||||||||SUR||||||||S||A|||||||||||||||||||SF|K||||20170215080000\r" + "ORC|NW||CD2017071101^RX|||E|10^BID^D4^^^R||20170215080000\r" + "RXO|^DOCUSATE SODIUM 100 MG CAPSULE|100||mg|||||G||10||5|\r";
    MedicationRequest medReq = ResourceUtils.getMedicationRequest(ftv, medicationRequest);
    // Expect 3 identifiers
    assertThat(medReq.hasIdentifier()).isTrue();
    assertThat(medReq.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = medReq.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("20170215080000", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posExtId = getIdentifierPositionByValue("DOCUSATE SODIUM 100 MG CAPSULE", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posRX = getIdentifierPositionByValue("CD2017071101", identifiers);
    assertThat(posRX).isNotSameAs(-1);
    // Identifier 1: Visit number
    Identifier identifier = medReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH-7
    assertThat(value).isEqualTo("20170215080000");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: extID based on RXO-1.2
    identifier = medReq.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // RXO-1.2
    assertThat(value).isEqualTo("DOCUSATE SODIUM 100 MG CAPSULE");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 3: RX
    identifier = medReq.getIdentifier().get(posRX);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.3.1
    assertThat(value).isEqualTo("CD2017071101");
    // ORC-3.2 any whitespace gets replaced with underscores
    assertThat(system).isEqualTo("urn:id:RX");
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}

Example 60 with System

use of org.hl7.gravity.refimpl.sdohexchange.sdohmappings.System in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method conditionDg1IdentifierTest3.

@Test
void conditionDg1IdentifierTest3() {
    String withDG132 = "MSH|^~\\&|||||201610015080000||ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6||||||\r" + "PID|||10290^^^WEST^MR||||20040530|M||||||||||||||||||||||N\n" + "PV1||I||||||||SUR||||||||S||A|||||||||||||||||||SF|K||||20170215080000\n" + "DG1|1|ICD10|^Ovarian Cancer|Test|20210322154449|A|E123|R45|Y|J76|C|15|1458.98||1|123^DOE^JOHN^A^|C|Y|20210322154326||S1234|Parent Diagnosis|Value345|Group567|DiagnosisG45|Y\r";
    Condition condition = ResourceUtils.getCondition(ftv, withDG132);
    // Expect 2 identifiers
    assertThat(condition.hasIdentifier()).isTrue();
    assertThat(condition.getIdentifier()).hasSize(2);
    List<Identifier> identifiers = condition.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("201610015080000", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posExtId = getIdentifierPositionByValue("Ovarian Cancer", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    // Identifier 1: Visit number
    Identifier identifier = condition.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("201610015080000");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: DG1.3.2
    identifier = condition.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // DG1.3.2
    assertThat(value).isEqualTo("Ovarian Cancer");
    assertThat(system).isEqualTo("urn:id:extID");
}