use of org.hl7.v3.RCMRIN030000UK06Message in project nia-patient-switching-standard-adaptor by NHSDigital.
the class BundleMapperService method mapToBundle.
public Bundle mapToBundle(RCMRIN030000UK06Message xmlMessage, String losingPracticeOdsCode) throws BundleMappingException {
try {
Bundle bundle = generator.generateBundle();
final RCMRMT030101UK04EhrExtract ehrExtract = getEhrExtract(xmlMessage);
final RCMRMT030101UK04EhrFolder ehrFolder = getEhrFolder(xmlMessage);
var agents = mapAgentDirectories(ehrFolder);
var patient = mapPatient(getEhrExtract(xmlMessage), getPatientOrganization(agents));
addEntry(bundle, patient);
Organization authorOrg = organizationMapper.mapAuthorOrganization(losingPracticeOdsCode);
addEntry(bundle, authorOrg);
addEntries(bundle, agents);
var mappedEncounterEhrCompositions = mapEncounters(ehrExtract, patient, losingPracticeOdsCode);
var encounters = handleMappedEncounterResources(mappedEncounterEhrCompositions, bundle);
var locations = mapLocations(ehrFolder, losingPracticeOdsCode);
addEntries(bundle, locations);
var procedureRequests = procedureRequestMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, procedureRequests);
var referralRequests = referralRequestMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, referralRequests);
var medicationResources = medicationRequestMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, medicationResources);
var bloodPressures = bloodPressureMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, bloodPressures);
var observations = observationMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, observations);
var immunizations = immunizationMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, immunizations);
var conditions = conditionMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, conditions);
var observationComments = observationCommentMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, observationComments);
var documentReferences = documentReferenceMapper.mapResources(ehrExtract, patient, encounters, authorOrg);
addEntries(bundle, documentReferences);
var templates = templateMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, templates);
var allergyIntolerances = allergyIntoleranceMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
addEntries(bundle, allergyIntolerances);
mapDiagnosticReports(bundle, ehrExtract, patient, encounters, observations, observationComments, losingPracticeOdsCode);
conditionMapper.addReferences(bundle, conditions, ehrExtract);
unknownPractitionerHandler.updateUnknownPractitionersRefs(bundle);
LOGGER.debug("Mapped Bundle with [{}] entries", bundle.getEntry().size());
return bundle;
} catch (Exception e) {
throw new BundleMappingException(e.getMessage());
}
}
use of org.hl7.v3.RCMRIN030000UK06Message in project nia-patient-switching-standard-adaptor by NHSDigital.
the class InboundMessageMergingService method mergeAndBundleMessage.
public void mergeAndBundleMessage(String conversationId) throws JAXBException, JsonProcessingException {
if (!StringUtils.hasText(conversationId)) {
throw new ValidationException(CONVERSATION_ID_HAS_NOT_BEEN_GIVEN);
}
PatientMigrationRequest migrationRequest = migrationRequestDao.getMigrationRequest(conversationId);
var inboundMessage = objectMapper.readValue(migrationRequest.getInboundMessage(), InboundMessage.class);
RCMRIN030000UK06Message payload = unmarshallString(inboundMessage.getPayload(), RCMRIN030000UK06Message.class);
try {
var attachmentLogs = getUndeletedLogsForConversation(conversationId);
var attachmentsContainSkeletonMessage = attachmentLogs.stream().anyMatch(log -> log.getSkeleton().equals(true));
if (attachmentsContainSkeletonMessage) {
findAndReplaceSkeleton(attachmentLogs, inboundMessage, conversationId);
}
// process attachments
var bypassPayloadLoadingArray = new String[attachmentLogs.size()];
Arrays.fill(bypassPayloadLoadingArray, "");
var messageAttachments = attachmentHandlerService.buildInboundAttachmentsFromAttachmentLogs(attachmentLogs, Arrays.asList(bypassPayloadLoadingArray), conversationId);
var newPayloadStr = attachmentReferenceUpdaterService.updateReferenceToAttachment(messageAttachments, conversationId, inboundMessage.getPayload());
// process bundle
inboundMessage.setPayload(newPayloadStr);
payload = unmarshallString(inboundMessage.getPayload(), RCMRIN030000UK06Message.class);
var bundle = bundleMapperService.mapToBundle(payload, migrationRequest.getLosingPracticeOdsCode());
migrationStatusLogService.updatePatientMigrationRequestAndAddMigrationStatusLog(conversationId, fhirParser.encodeToJson(bundle), objectMapper.writeValueAsString(inboundMessage), EHR_EXTRACT_TRANSLATED);
} catch (InlineAttachmentProcessingException | SAXException | TransformerException | BundleMappingException | JAXBException | AttachmentNotFoundException | JsonProcessingException e) {
LOGGER.error("failed to merge Large Message Parts", e);
nackAckPreparationService.sendNackMessage(EHR_EXTRACT_CANNOT_BE_PROCESSED, payload, conversationId);
}
}
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