Examples with BundleMappingException uk.nhs.adaptors.pss.translator.exception.BundleMappingException used on opensource projects

Example 1 with BundleMappingException

use of uk.nhs.adaptors.pss.translator.exception.BundleMappingException in project nia-patient-switching-standard-adaptor by NHSDigital.

the class EhrExtractMessageHandler method handleMessage.

public void handleMessage(InboundMessage inboundMessage, String conversationId) throws JAXBException, JsonProcessingException, InlineAttachmentProcessingException, BundleMappingException, AttachmentNotFoundException, ParseException, SAXException {
    RCMRIN030000UK06Message payload = unmarshallString(inboundMessage.getPayload(), RCMRIN030000UK06Message.class);
    PatientMigrationRequest migrationRequest = migrationRequestDao.getMigrationRequest(conversationId);
    MigrationStatusLog migrationStatusLog = migrationStatusLogService.getLatestMigrationStatusLog(conversationId);
    migrationStatusLogService.addMigrationStatusLog(EHR_EXTRACT_RECEIVED, conversationId);
    try {
        Document ebXmlDocument = getEbXmlDocument(inboundMessage);
        String messageId = xPathService.getNodeValue(ebXmlDocument, MESSAGE_ID_PATH);
        boolean hasExternalAttachment = !(inboundMessage.getExternalAttachments() == null || inboundMessage.getExternalAttachments().isEmpty());
        // Manage attachments against the EHR message
        var attachments = inboundMessage.getAttachments();
        if (attachments != null) {
            attachmentHandlerService.storeAttachments(attachments, conversationId);
            for (var i = 0; i < attachments.size(); i++) {
                var attachment = attachments.get(i);
                PatientAttachmentLog newAttachmentLog = buildPatientAttachmentLogFromAttachment(messageId, migrationRequest, attachment);
                patientAttachmentLogService.addAttachmentLog(newAttachmentLog);
            }
        }
        if (!hasExternalAttachment) {
            var fileUpdatedPayload = attachmentReferenceUpdaterService.updateReferenceToAttachment(inboundMessage.getAttachments(), conversationId, inboundMessage.getPayload());
            inboundMessage.setPayload(fileUpdatedPayload);
            payload = unmarshallString(inboundMessage.getPayload(), RCMRIN030000UK06Message.class);
            var bundle = bundleMapperService.mapToBundle(payload, migrationRequest.getLosingPracticeOdsCode());
            migrationStatusLogService.updatePatientMigrationRequestAndAddMigrationStatusLog(conversationId, fhirParser.encodeToJson(bundle), objectMapper.writeValueAsString(inboundMessage), EHR_EXTRACT_TRANSLATED);
            nackAckPreparationService.sendAckMessage(payload, conversationId);
        }
        // sending continue message
        if (hasExternalAttachment) {
            String patientNhsNumber = XmlParseUtilService.parseNhsNumber(payload);
            for (InboundMessage.ExternalAttachment externalAttachment : inboundMessage.getExternalAttachments()) {
                PatientAttachmentLog patientAttachmentLog;
                // save COPC_UK01 messages
                patientAttachmentLog = buildPatientAttachmentLogFromExternalAttachment(migrationRequest, externalAttachment);
                patientAttachmentLogService.addAttachmentLog(patientAttachmentLog);
            }
            migrationStatusLogService.updatePatientMigrationRequestAndAddMigrationStatusLog(conversationId, null, objectMapper.writeValueAsString(inboundMessage), EHR_EXTRACT_TRANSLATED);
            sendContinueRequest(payload, conversationId, patientNhsNumber, migrationRequest.getWinningPracticeOdsCode(), migrationStatusLog.getDate().toInstant());
        }
    } catch (BundleMappingException | DataFormatException | JsonProcessingException | InlineAttachmentProcessingException | AttachmentNotFoundException | SAXException | StorageException ex) {
        nackAckPreparationService.sendNackMessage(EHR_EXTRACT_CANNOT_BE_PROCESSED, payload, conversationId);
        throw ex;
    } catch (ParseException ex) {
        throw ex;
    }
}

Example 2 with BundleMappingException

use of uk.nhs.adaptors.pss.translator.exception.BundleMappingException in project nia-patient-switching-standard-adaptor by NHSDigital.

the class MhsQueueMessageHandler method handleMessage.

public boolean handleMessage(Message message) {
    try {
        InboundMessage inboundMessage = readMessage(message);
        Document ebXmlDocument = xPathService.parseDocumentFromXml(inboundMessage.getEbXML());
        String conversationId = xPathService.getNodeValue(ebXmlDocument, CONVERSATION_ID_PATH);
        applyConversationId(conversationId);
        String interactionId = xPathService.getNodeValue(ebXmlDocument, INTERACTION_ID_PATH);
        if (ACKNOWLEDGEMENT_INTERACTION_ID.equals(interactionId)) {
            acknowledgmentMessageHandler.handleMessage(inboundMessage, conversationId);
        } else if (EHR_EXTRACT_INTERACTION_ID.equals(interactionId)) {
            ehrExtractMessageHandler.handleMessage(inboundMessage, conversationId);
        } else if (CONTINUE_ATTACHMENT_INTERACTION_ID.equals(interactionId)) {
            continueMessageHandler.handleMessage(inboundMessage, conversationId);
        } else {
            LOGGER.info("Handling message with [{}] interaction id not implemented", interactionId);
        }
        return true;
    } catch (JMSException | JAXBException | SAXException e) {
        LOGGER.error("Unable to read the content of the inbound MHS message", e);
        return false;
    } catch (JsonProcessingException | DataFormatException e) {
        LOGGER.error("Unable to parse messages", e);
        return false;
    } catch (InlineAttachmentProcessingException | AttachmentLogException e) {
        LOGGER.error("Unable to process inline attachments", e);
        return false;
    } catch (AttachmentNotFoundException e) {
        LOGGER.error("Unable to find attachment reference inbound message", e);
        return false;
    } catch (BundleMappingException e) {
        LOGGER.error("Unable to map EHR Extract to FHIR bundle", e);
        return false;
    } catch (ParseException e) {
        LOGGER.error("Unable to parse Ebxml References", e);
        return false;
    }
// catch (SkeletonEhrProcessingException e) {
// LOGGER.error("Unable to process EhrExtract", e);
// return false;
// }
}

Example 3 with BundleMappingException

use of uk.nhs.adaptors.pss.translator.exception.BundleMappingException in project nia-patient-switching-standard-adaptor by NHSDigital.

the class EhrExtractMessageHandlerTest method When_HandleMessage_WithMapToBundleThrows_Expect_BundleMappingException.

@Test
public void When_HandleMessage_WithMapToBundleThrows_Expect_BundleMappingException() throws BundleMappingException, AttachmentNotFoundException, ValidationException, InlineAttachmentProcessingException {
    InboundMessage inboundMessage = new InboundMessage();
    inboundMessage.setPayload(readInboundMessagePayloadFromFile());
    inboundMessage.setExternalAttachments(new ArrayList<>());
    PatientMigrationRequest migrationRequest = PatientMigrationRequest.builder().losingPracticeOdsCode(LOSING_ODE_CODE).winningPracticeOdsCode(WINNING_ODE_CODE).build();
    when(migrationRequestDao.getMigrationRequest(CONVERSATION_ID)).thenReturn(migrationRequest);
    when(attachmentReferenceUpdaterService.updateReferenceToAttachment(inboundMessage.getAttachments(), CONVERSATION_ID, inboundMessage.getPayload())).thenReturn(inboundMessage.getPayload());
    doThrow(new BundleMappingException("Test Exception")).when(bundleMapperService).mapToBundle(any(RCMRIN030000UK06Message.class), any());
    assertThrows(BundleMappingException.class, () -> ehrExtractMessageHandler.handleMessage(inboundMessage, CONVERSATION_ID));
}

Example 4 with BundleMappingException

use of uk.nhs.adaptors.pss.translator.exception.BundleMappingException in project nia-patient-switching-standard-adaptor by NHSDigital.

the class BundleMapperService method mapToBundle.

public Bundle mapToBundle(RCMRIN030000UK06Message xmlMessage, String losingPracticeOdsCode) throws BundleMappingException {
    try {
        Bundle bundle = generator.generateBundle();
        final RCMRMT030101UK04EhrExtract ehrExtract = getEhrExtract(xmlMessage);
        final RCMRMT030101UK04EhrFolder ehrFolder = getEhrFolder(xmlMessage);
        var agents = mapAgentDirectories(ehrFolder);
        var patient = mapPatient(getEhrExtract(xmlMessage), getPatientOrganization(agents));
        addEntry(bundle, patient);
        Organization authorOrg = organizationMapper.mapAuthorOrganization(losingPracticeOdsCode);
        addEntry(bundle, authorOrg);
        addEntries(bundle, agents);
        var mappedEncounterEhrCompositions = mapEncounters(ehrExtract, patient, losingPracticeOdsCode);
        var encounters = handleMappedEncounterResources(mappedEncounterEhrCompositions, bundle);
        var locations = mapLocations(ehrFolder, losingPracticeOdsCode);
        addEntries(bundle, locations);
        var procedureRequests = procedureRequestMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, procedureRequests);
        var referralRequests = referralRequestMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, referralRequests);
        var medicationResources = medicationRequestMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, medicationResources);
        var bloodPressures = bloodPressureMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, bloodPressures);
        var observations = observationMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, observations);
        var immunizations = immunizationMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, immunizations);
        var conditions = conditionMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, conditions);
        var observationComments = observationCommentMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, observationComments);
        var documentReferences = documentReferenceMapper.mapResources(ehrExtract, patient, encounters, authorOrg);
        addEntries(bundle, documentReferences);
        var templates = templateMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, templates);
        var allergyIntolerances = allergyIntoleranceMapper.mapResources(ehrExtract, patient, encounters, losingPracticeOdsCode);
        addEntries(bundle, allergyIntolerances);
        mapDiagnosticReports(bundle, ehrExtract, patient, encounters, observations, observationComments, losingPracticeOdsCode);
        conditionMapper.addReferences(bundle, conditions, ehrExtract);
        unknownPractitionerHandler.updateUnknownPractitionersRefs(bundle);
        LOGGER.debug("Mapped Bundle with [{}] entries", bundle.getEntry().size());
        return bundle;
    } catch (Exception e) {
        throw new BundleMappingException(e.getMessage());
    }
}

Example 5 with BundleMappingException

use of uk.nhs.adaptors.pss.translator.exception.BundleMappingException in project nia-patient-switching-standard-adaptor by NHSDigital.

the class InboundMessageMergingService method mergeAndBundleMessage.

public void mergeAndBundleMessage(String conversationId) throws JAXBException, JsonProcessingException {
    if (!StringUtils.hasText(conversationId)) {
        throw new ValidationException(CONVERSATION_ID_HAS_NOT_BEEN_GIVEN);
    }
    PatientMigrationRequest migrationRequest = migrationRequestDao.getMigrationRequest(conversationId);
    var inboundMessage = objectMapper.readValue(migrationRequest.getInboundMessage(), InboundMessage.class);
    RCMRIN030000UK06Message payload = unmarshallString(inboundMessage.getPayload(), RCMRIN030000UK06Message.class);
    try {
        var attachmentLogs = getUndeletedLogsForConversation(conversationId);
        var attachmentsContainSkeletonMessage = attachmentLogs.stream().anyMatch(log -> log.getSkeleton().equals(true));
        if (attachmentsContainSkeletonMessage) {
            findAndReplaceSkeleton(attachmentLogs, inboundMessage, conversationId);
        }
        // process attachments
        var bypassPayloadLoadingArray = new String[attachmentLogs.size()];
        Arrays.fill(bypassPayloadLoadingArray, "");
        var messageAttachments = attachmentHandlerService.buildInboundAttachmentsFromAttachmentLogs(attachmentLogs, Arrays.asList(bypassPayloadLoadingArray), conversationId);
        var newPayloadStr = attachmentReferenceUpdaterService.updateReferenceToAttachment(messageAttachments, conversationId, inboundMessage.getPayload());
        // process bundle
        inboundMessage.setPayload(newPayloadStr);
        payload = unmarshallString(inboundMessage.getPayload(), RCMRIN030000UK06Message.class);
        var bundle = bundleMapperService.mapToBundle(payload, migrationRequest.getLosingPracticeOdsCode());
        migrationStatusLogService.updatePatientMigrationRequestAndAddMigrationStatusLog(conversationId, fhirParser.encodeToJson(bundle), objectMapper.writeValueAsString(inboundMessage), EHR_EXTRACT_TRANSLATED);
    } catch (InlineAttachmentProcessingException | SAXException | TransformerException | BundleMappingException | JAXBException | AttachmentNotFoundException | JsonProcessingException e) {
        LOGGER.error("failed to merge Large Message Parts", e);
        nackAckPreparationService.sendNackMessage(EHR_EXTRACT_CANNOT_BE_PROCESSED, payload, conversationId);
    }
}