Examples with PermissionsController org.jbei.ice.lib.access.PermissionsController used on opensource projects

Example 6 with PermissionsController

use of org.jbei.ice.lib.access.PermissionsController in project ice by JBEI.

the class EntryLinksTest method testAddLink.

@Test
public void testAddLink() throws Exception {
    Account account = AccountCreator.createTestAccount("testAddLink", false);
    String userId = account.getEmail();
    Account differentAccount = AccountCreator.createTestAccount("testAddLink2", false);
    //create strain and plasmid
    Strain strain = TestEntryCreator.createTestStrain(account);
    Plasmid plasmid = TestEntryCreator.createTestPlasmid(differentAccount);
    // give each account read permissions
    AccessPermission accessPermission = new AccessPermission(AccessPermission.Article.ACCOUNT, account.getId(), AccessPermission.Type.READ_ENTRY, plasmid.getId(), "");
    PermissionsController permissionsController = new PermissionsController();
    Assert.assertNotNull(permissionsController.addPermission(differentAccount.getEmail(), accessPermission));
    accessPermission = new AccessPermission(AccessPermission.Article.ACCOUNT, differentAccount.getId(), AccessPermission.Type.READ_ENTRY, strain.getId(), "");
    Assert.assertNotNull(permissionsController.addPermission(account.getEmail(), accessPermission));
    // add plasmid links to strain
    EntryLinks entryLinks = new EntryLinks(userId, Long.toString(strain.getId()));
    // attempt to add as a parent (expected to fail)
    Assert.assertFalse(entryLinks.addLink(plasmid.toDataTransferObject(), LinkType.PARENT));
    // now add as a child
    Assert.assertTrue(entryLinks.addLink(plasmid.toDataTransferObject(), LinkType.CHILD));
    // add second plasmid
    Plasmid plasmid2 = TestEntryCreator.createTestPlasmid(account);
    Assert.assertTrue(entryLinks.addLink(plasmid2.toDataTransferObject(), LinkType.CHILD));
}

Example 7 with PermissionsController

use of org.jbei.ice.lib.access.PermissionsController in project ice by JBEI.

the class FolderControllerTest method testGetPublicFolders.

@Test
public void testGetPublicFolders() throws Exception {
    Account account = AccountCreator.createTestAccount("testGetPublicFolders", false);
    Assert.assertNotNull(account);
    String userId = account.getEmail();
    FolderDetails details = new FolderDetails();
    details.setName("test1");
    details = controller.createPersonalFolder(userId, details);
    Assert.assertNotNull(details);
    PermissionsController permissionsController = new PermissionsController();
    AccessPermission accessPermission = new AccessPermission();
    accessPermission.setArticle(AccessPermission.Article.GROUP);
    long publicGroupId = new GroupController().createOrRetrievePublicGroup().getId();
    accessPermission.setArticleId(publicGroupId);
    accessPermission.setType(AccessPermission.Type.READ_FOLDER);
    accessPermission.setTypeId(details.getId());
    permissionsController.addPermission(userId, accessPermission);
    ArrayList<FolderDetails> results = controller.getPublicFolders();
    Assert.assertFalse(results.isEmpty());
    Assert.assertEquals(details.getName(), results.get(0).getName());
}

Example 8 with PermissionsController

use of org.jbei.ice.lib.access.PermissionsController in project ice by JBEI.

the class BulkUploadController method approveBulkImport.

public boolean approveBulkImport(String userId, long id) {
    // only admins allowed
    if (!accountController.isAdministrator(userId)) {
        Logger.warn("Only administrators can approve bulk imports");
        return false;
    }
    // retrieve bulk upload in question (at this point it is owned by system)
    BulkUpload bulkUpload = dao.get(id);
    if (bulkUpload == null) {
        Logger.error("Could not retrieve bulk upload with id \"" + id + "\" for approval");
        return false;
    }
    // get permissions for bulk upload and set it to the individual entries
    PermissionsController permissionsController = new PermissionsController();
    ArrayList<AccessPermission> permissions = new ArrayList<>();
    for (Permission permission : bulkUpload.getPermissions()) {
        AccessPermission accessPermission = permission.toDataTransferObject();
        // read or write access
        if (accessPermission.getType() == AccessPermission.Type.READ_UPLOAD)
            accessPermission.setType(AccessPermission.Type.READ_ENTRY);
        else
            accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
        permissions.add(accessPermission);
    }
    // TODO : this needs to go into a task that auto updates
    for (Entry entry : bulkUpload.getContents()) {
        entry.setVisibility(Visibility.OK.getValue());
        Set<Entry> linked = entry.getLinkedEntries();
        Entry plasmid = null;
        if (linked != null && !linked.isEmpty()) {
            plasmid = (Entry) linked.toArray()[0];
            plasmid.setVisibility(Visibility.OK.getValue());
        }
        // set permissions
        for (AccessPermission accessPermission : permissions) {
            accessPermission.setTypeId(entry.getId());
            permissionsController.addPermission(userId, accessPermission);
            if (plasmid != null) {
                accessPermission.setTypeId(plasmid.getId());
                permissionsController.addPermission(userId, accessPermission);
            }
        }
        entryController.update(userId, entry);
        if (plasmid != null)
            entryController.update(userId, plasmid);
    }
    // when done approving, delete the bulk upload record but not the entries associated with it.
    bulkUpload.getContents().clear();
    dao.delete(bulkUpload);
    return true;
}