Examples with Account org.jbei.ice.storage.model.Account used on opensource projects

Example 1 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class Entries method updateVisibility.

public boolean updateVisibility(List<Long> entryIds, Visibility visibility) {
    Account account = accountDAO.getByEmail(userId);
    List<Group> accountGroups = new GroupController().getAllGroups(account);
    if (!new AccountController().isAdministrator(userId) && !permissionDAO.canWrite(account, accountGroups, entryIds))
        return false;
    for (long entryId : entryIds) {
        Entry entry = dao.get(entryId);
        if (entry.getVisibility() == visibility.getValue())
            continue;
        entry.setVisibility(visibility.getValue());
        dao.update(entry);
    }
    return true;
}

Example 2 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class RequestRetriever method updateStatus.

public SampleRequest updateStatus(String userId, long requestId, SampleRequestStatus newStatus) {
    Request request = dao.get(requestId);
    if (request == null)
        return null;
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    if (!request.getAccount().getEmail().equalsIgnoreCase(userId) && account.getType() != AccountType.ADMIN) {
        throw new PermissionException("No permissions for request");
    }
    if (request.getStatus() == newStatus)
        return request.toDataTransferObject();
    request.setStatus(newStatus);
    request.setUpdated(new Date());
    return dao.update(request).toDataTransferObject();
}

Example 3 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class BulkUploadControllerTest method testGetBulkImport.

@Test
public void testGetBulkImport() throws Exception {
    Account account = AccountCreator.createTestAccount("testGetBulkImport", false);
    BulkEntryCreator creator = new BulkEntryCreator();
    // create bulk upload
    long id = creator.createBulkUpload(account.getEmail(), EntryType.PART);
    Assert.assertTrue(id > 0);
    int count = 100;
    for (int i = 0; i < count; i += 1) {
        PartData partData = new PartData(EntryType.PLASMID);
        partData.setBioSafetyLevel(1);
        partData.setShortDescription("part description");
        partData.setName("part" + i);
        partData = creator.createEntry(account.getEmail(), id, partData);
        Assert.assertNotNull(partData);
    // add to bulk upload
    }
    BulkUploadInfo info = controller.getBulkImport(account.getEmail(), id, 0, 100);
    Assert.assertNotNull(info);
    Assert.assertEquals(info.getEntryList().size(), 100);
    // test retrieval in order
    for (int i = 0; i < 100; i += 10) {
        info = controller.getBulkImport(account.getEmail(), id, i, 10);
        Assert.assertNotNull(info);
        Assert.assertEquals(info.getEntryList().size(), 10);
        ArrayList<PartData> list = info.getEntryList();
        int j = i;
        for (PartData data : list) {
            Assert.assertEquals(data.getName(), "part" + j);
            j += 1;
        }
    }
}

Example 4 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class BulkUploadControllerTest method testDeleteDraftById.

@Test
public void testDeleteDraftById() throws Exception {
    Account account = AccountCreator.createTestAccount("testDeleteDraftById", false);
    BulkUploadAutoUpdate autoUpdate = new BulkUploadAutoUpdate(EntryType.PLASMID);
    autoUpdate.getKeyValue().put(EntryField.SUMMARY, "plasmid summary");
    autoUpdate.getKeyValue().put(EntryField.NAME, "plasmid name");
    autoUpdate.getKeyValue().put(EntryField.PI, "plasmid principal investigator");
    autoUpdate.getKeyValue().put(EntryField.SELECTION_MARKERS, "plasmid select markers");
    autoUpdate = controller.autoUpdateBulkUpload(account.getEmail(), autoUpdate, EntryType.PLASMID);
    Assert.assertNotNull(autoUpdate);
    // delete bulk upload
    BulkUploadDeleteTask task = new BulkUploadDeleteTask(account.getEmail(), autoUpdate.getBulkUploadId());
    task.execute();
    Assert.assertNull(controller.getBulkImport(account.getEmail(), autoUpdate.getBulkUploadId(), 0, 0));
}

Example 5 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class TestEntryCreator method createTestAccountAndStrain.

public static Strain createTestAccountAndStrain(String userId) throws Exception {
    Account account = AccountCreator.createTestAccount(userId, false);
    Assert.assertNotNull(account);
    Strain strain = new Strain();
    strain.setName("sTrain");
    strain.setBioSafetyLevel(BioSafetyOption.LEVEL_ONE.ordinal());
    strain.setShortDescription("test strain");
    strain = (Strain) new EntryCreator().createEntry(account, strain, null);
    return strain;
}