Examples with Account org.jbei.ice.storage.model.Account used on opensource projects

Example 21 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class GroupController method retrieveAccountGroupUUIDs.

public Set<String> retrieveAccountGroupUUIDs(String userId) {
    Account account = accountController.getByEmail(userId);
    Set<String> uuids = new HashSet<>();
    if (account != null) {
        uuids.addAll(dao.getMemberGroupUUIDs(account));
    }
    uuids.add(PUBLIC_GROUP_UUID);
    return uuids;
}

Example 22 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class GroupController method createGroup.

// create group without parent
public UserGroup createGroup(String userId, UserGroup info) {
    if (info.getType() == GroupType.PUBLIC && !accountController.isAdministrator(userId)) {
        String errMsg = "Non admin " + userId + " attempting to create public group";
        Logger.error(errMsg);
        return null;
    }
    if (info.getType() == null)
        info.setType(GroupType.PRIVATE);
    Account account = accountController.getByEmail(userId);
    Group group = new Group();
    group.setLabel(info.getLabel());
    group.setDescription(info.getDescription() == null ? "" : info.getDescription());
    group.setType(info.getType());
    group.setOwner(account);
    group = save(group);
    for (AccountTransfer accountTransfer : info.getMembers()) {
        Account memberAccount = accountController.getByEmail(accountTransfer.getEmail());
        if (memberAccount == null)
            continue;
        memberAccount.getGroups().add(group);
        accountController.save(memberAccount);
    }
    info = group.toDataTransferObject();
    for (Account addedAccount : group.getMembers()) {
        info.getMembers().add(addedAccount.toDataTransferObject());
    }
    info.setMemberCount(info.getMembers().size());
    return info;
}

Example 23 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class Collection method getBulkUploadFolder.

/**
     * Retrieves bulk import and entries associated with it that are referenced by the
     * id in the parameter. Only owners or administrators are allowed to retrieve bulk imports
     *
     * @param id     unique identifier for bulk import
     * @param offset offset for upload entries (start)
     * @param limit  maximum number of entries to return with the upload
     * @return data transfer object with the retrieved bulk import data and associated entries
     * @throws PermissionException
     */
protected AbstractFolder getBulkUploadFolder(long id, int offset, int limit) {
    BulkUploadDAO uploadDAO = DAOFactory.getBulkUploadDAO();
    BulkUploadAuthorization authorization = new BulkUploadAuthorization();
    BulkUpload draft = uploadDAO.get(id);
    if (draft == null)
        return null;
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    authorization.expectRead(account.getEmail(), draft);
    // retrieve the entries associated with the bulk import
    BulkUploadInfo info = draft.toDataTransferObject();
    List<Entry> list = uploadDAO.retrieveDraftEntries(id, offset, limit);
    for (Entry entry : list) {
        PartData partData = setFileData(userId, entry, ModelToInfoFactory.getInfo(entry));
        // check if any links and convert
        if (!entry.getLinkedEntries().isEmpty()) {
            Entry linked = (Entry) entry.getLinkedEntries().toArray()[0];
            PartData linkedData = partData.getLinkedParts().remove(0);
            linkedData = setFileData(userId, linked, linkedData);
            partData.getLinkedParts().add(linkedData);
        }
        info.getEntryList().add(partData);
    }
    info.setCount(uploadDAO.retrieveSavedDraftCount(id));
    return info;
}

Example 24 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class TransferTask method execute.

public void execute() {
    RemoteTransfer transfer = new RemoteTransfer();
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    if (account.getType() != AccountType.ADMIN)
        return;
    Entries retriever = new Entries(account.getEmail());
    List<Long> entries = retriever.getEntriesFromSelectionContext(entrySelection);
    Logger.info(userId + ": requesting transfer to " + remoteId);
    List<PartData> dataList = transfer.getPartsForTransfer(entries);
    List<Long> remoteIds = transfer.transferEntries(remoteId, dataList);
    // check folder
    if (StringUtils.isEmpty(this.entrySelection.getFolderId()))
        return;
    // create remoteFolder
    long folderId = Long.decode(this.entrySelection.getFolderId());
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    Logger.info("Adding " + remoteIds.size() + " transferred entries to remote folder");
    transfer.transferFolder(remoteId, folder.toDataTransferObject(), remoteIds);
}

Example 25 with Account

use of org.jbei.ice.storage.model.Account in project ice by JBEI.

the class UserSessions method getUserAccount.

/**
     * Retrieves the account object associated with the session identifier.
     * If the requesting user is not the same as the user associated with the session, then the requesting
     * user is required to have administrative privileges on their account
     *
     * @param requestingUser unique identifier for user making request
     * @param token          unique session identifier
     * @return account associated with the session token/identifier  or null if no account is located
     * @throws PermissionException if the user Id associated with the session token is not the same as the requesting
     *                             user but the requesting user's account does not have administrative privileges
     */
public static AccountTransfer getUserAccount(String requestingUser, String token) {
    String userId = getUserIdBySession(token);
    if (StringUtils.isEmpty(userId))
        return null;
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    if (account == null) {
        Logger.error("Account for userId returned by session (\"" + userId + "\") cannot be found");
        return null;
    }
    AccountController accountController = new AccountController();
    if (!requestingUser.equalsIgnoreCase(userId) && !accountController.isAdministrator(requestingUser))
        throw new PermissionException();
    AccountTransfer accountTransfer = account.toDataTransferObject();
    accountTransfer.setAdmin(accountController.isAdministrator(userId));
    return accountTransfer;
}