Examples with Entries org.jbei.ice.lib.entry.Entries used on opensource projects

Example 1 with Entries

use of org.jbei.ice.lib.entry.Entries in project ice by JBEI.

the class TransferTask method execute.

public void execute() {
    RemoteTransfer transfer = new RemoteTransfer();
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    if (account.getType() != AccountType.ADMIN)
        return;
    Entries retriever = new Entries(account.getEmail());
    List<Long> entries = retriever.getEntriesFromSelectionContext(entrySelection);
    Logger.info(userId + ": requesting transfer to " + remoteId);
    List<PartData> dataList = transfer.getPartsForTransfer(entries);
    List<Long> remoteIds = transfer.transferEntries(remoteId, dataList);
    // check folder
    if (StringUtils.isEmpty(this.entrySelection.getFolderId()))
        return;
    // create remoteFolder
    long folderId = Long.decode(this.entrySelection.getFolderId());
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    Logger.info("Adding " + remoteIds.size() + " transferred entries to remote folder");
    transfer.transferFolder(remoteId, folder.toDataTransferObject(), remoteIds);
}

Example 2 with Entries

use of org.jbei.ice.lib.entry.Entries in project ice by JBEI.

the class FolderContents method addEntrySelection.

/**
     * Adds entries in the selection context, to specified folders
     *
     * @param userId        unique identifier for user making request
     * @param entryLocation entry selection context which also contains the folders to
     *                      add the entries obtained from the context to
     * @return list of folders that the entries where added to. They should correspond to the specified
     * folders in the selection context
     */
public List<FolderDetails> addEntrySelection(String userId, EntrySelection entryLocation) {
    Entries retriever = new Entries(userId);
    if (entryLocation.getRemoteEntries() != null && !entryLocation.getRemoteEntries().isEmpty())
        return addRemoteEntries(userId, entryLocation.getRemoteEntries(), entryLocation.getDestination());
    List<Long> entries = retriever.getEntriesFromSelectionContext(entryLocation);
    if (StringUtils.isEmpty(userId)) {
        ArrayList<FolderDetails> destination = entryLocation.getDestination();
        // check that folder is transferred before rejecting
        if (destination == null || destination.isEmpty())
            throw new IllegalArgumentException("Cannot add without valid user id or destination");
        Folder folder = folderDAO.get(destination.get(0).getId());
        if (folder == null)
            throw new IllegalArgumentException("Cannot find folder");
        if (folder.getType() != FolderType.TRANSFERRED)
            throw new PermissionException("Can only add to transferred folder without id");
        FolderDetails details = addEntriesToTransferredFolder(entries, folder);
        List<FolderDetails> result = new ArrayList<>();
        result.add(details);
        return result;
    }
    return addEntriesToFolders(userId, entries, entryLocation.getDestination());
}

Example 3 with Entries

use of org.jbei.ice.lib.entry.Entries in project ice by JBEI.

the class FolderContents method removeFolderContents.

/**
     * Removes the specified contents of a folder, optionally adding them to another folder
     *
     * @param userId    unique identifier for user making request
     * @param folderId  unique identifier for folder whose (specified) entries are being removed
     * @param selection wrapper around the selection context for the contents
     * @param move      true, if the contents are to be added to another (set of) folder(s) (which should be specified in
     *                  <code>selection</code> parameter)
     * @return true, if action completed successfully; false otherwise
     */
public boolean removeFolderContents(String userId, long folderId, EntrySelection selection, boolean move) {
    // remove entries from specified folder
    boolean isAdministrator = accountController.isAdministrator(userId);
    Folder folder = folderDAO.get(folderId);
    if (folder.getType() == FolderType.PUBLIC && !isAdministrator) {
        String errMsg = userId + ": cannot modify folder " + folder.getName();
        throw new PermissionException(errMsg);
    }
    Entries entries = new Entries(userId);
    List<Long> entryIds = entries.getEntriesFromSelectionContext(selection);
    boolean successRemove = folderDAO.removeFolderEntries(folder, entryIds) != null;
    if (!move)
        return successRemove;
    // add to specified folder
    selection.setFolderId(Long.toString(folderId));
    List<FolderDetails> details = addEntrySelection(userId, selection);
    return !details.isEmpty();
}