Examples with AccountController org.jbei.ice.lib.account.AccountController used on opensource projects

Example 11 with AccountController

use of org.jbei.ice.lib.account.AccountController in project ice by JBEI.

the class ModelToInfoFactory method getTipViewCommon.

private static PartData getTipViewCommon(Entry entry) {
    EntryType type = EntryType.nameToType(entry.getRecordType());
    PartData view = new PartData(type);
    view.setId(entry.getId());
    view.setRecordId(entry.getRecordId());
    view.setPartId(entry.getPartNumber());
    view.setName(entry.getName());
    view.setAlias(entry.getAlias());
    view.setCreator(entry.getCreator());
    view.setCreatorEmail(entry.getCreatorEmail());
    view.setStatus(entry.getStatus());
    view.setOwner(entry.getOwner());
    view.setOwnerEmail(entry.getOwnerEmail());
    view.setSelectionMarkers(EntryUtil.getSelectionMarkersAsList(entry.getSelectionMarkers()));
    AccountController accountController = new AccountController();
    Account account;
    String ownerEmail = entry.getOwnerEmail();
    if (ownerEmail != null && (account = accountController.getByEmail(ownerEmail)) != null)
        view.setOwnerId(account.getId());
    String creatorEmail = entry.getCreatorEmail();
    if (creatorEmail != null && (account = accountController.getByEmail(creatorEmail)) != null)
        view.setCreatorId(account.getId());
    view.setKeywords(entry.getKeywords());
    view.setShortDescription(entry.getShortDescription());
    view.setCreationTime(entry.getCreationTime().getTime());
    view.setModificationTime(entry.getModificationTime().getTime());
    view.setBioSafetyLevel(entry.getBioSafetyLevel());
    view.setFundingSource(entry.getFundingSource());
    view.setPrincipalInvestigator(entry.getPrincipalInvestigator());
    return view;
}

Example 12 with AccountController

use of org.jbei.ice.lib.account.AccountController in project ice by JBEI.

the class ApplicationInitialize method startUp.

/**
     * Responsible for initializing the system and checking for the existence of needed
     * data (such as settings) and creating as needed
     */
public static void startUp() {
    // check for and create public group
    GroupController groupController = new GroupController();
    groupController.createOrRetrievePublicGroup();
    // check for and create admin account
    AccountController accountController = new AccountController();
    accountController.createAdminAccount();
    // check for and create default settings
    ConfigurationController configurationController = new ConfigurationController();
    configurationController.initPropertyValues();
    // check blast
    BlastPlus.scheduleBlastIndexRebuildTask(false);
    AutoAnnotationBlastDbBuildTask autoAnnotationBlastDbBuildTask = new AutoAnnotationBlastDbBuildTask();
    IceExecutorService.getInstance().runTask(autoAnnotationBlastDbBuildTask);
}

Example 13 with AccountController

use of org.jbei.ice.lib.account.AccountController in project ice by JBEI.

the class UserIdAuthentication method authenticates.

@Override
public String authenticates(String userId, String password) throws AuthenticationException {
    AccountController retriever = new AccountController();
    Account account = retriever.getByEmail(userId);
    if (account == null)
        return null;
    return account.getEmail();
}

Example 14 with AccountController

use of org.jbei.ice.lib.account.AccountController in project ice by JBEI.

the class Groups method get.

/**
     * Retrieves groups that user is either a member of. Users are implicit members of the groups
     * that they create so call also returns those groups
     *
     * @param userId id of account whose groups are being requested
     * @return list of groups that user is a member of
     */
public Results<UserGroup> get(long userId) {
    AccountController accountController = new AccountController();
    Account userIdAccount = accountDAO.get(userId);
    Account account = accountDAO.getByEmail(this.userId);
    // TODO : account authorization
    if (!accountController.isAdministrator(account.getEmail()) && account.getId() != userIdAccount.getId())
        return null;
    List<Group> result = dao.retrieveMemberGroups(account);
    Results<UserGroup> groupResults = new Results<>();
    for (Group group : result) {
        UserGroup user = group.toDataTransferObject();
        long count = dao.getMemberCount(group.getUuid());
        // get clients
        count += DAOFactory.getRemoteClientModelDAO().getClientCount(group);
        user.setMemberCount(count);
        groupResults.getData().add(user);
    }
    return groupResults;
}

Example 15 with AccountController

use of org.jbei.ice.lib.account.AccountController in project ice by JBEI.

the class HibernateSearch method checkEnableSecurityFilter.

/**
     * Enables the security filter if the account does not have administrative privileges
     *
     * @param userId        identifier for account which is checked for administrative privs
     * @param fullTextQuery search fulltextquery for which filter is enabled
     */
protected FullTextQuery checkEnableSecurityFilter(String userId, FullTextQuery fullTextQuery) {
    Set<String> groupUUIDs;
    if (StringUtils.isEmpty(userId)) {
        groupUUIDs = new HashSet<>();
        groupUUIDs.add(GroupController.PUBLIC_GROUP_UUID);
    } else {
        AccountController accountController = new AccountController();
        if (accountController.isAdministrator(userId)) {
            return fullTextQuery;
        }
        groupUUIDs = new GroupController().retrieveAccountGroupUUIDs(userId);
    }
    fullTextQuery.enableFullTextFilter("security").setParameter("account", userId).setParameter("groupUUids", groupUUIDs);
    return fullTextQuery;
}