Examples with Curation org.jbei.ice.lib.dto.Curation used on opensource projects

Example 1 with Curation

use of org.jbei.ice.lib.dto.Curation in project ice by JBEI.

the class AnnotationsTest method testCurate.

@Test
public void testCurate() throws Exception {
    Account account = AccountCreator.createTestAccount("AnnotationsTest.testCurate", true);
    Plasmid plasmid = TestEntryCreator.createTestPlasmid(account);
    Assert.assertNotNull(plasmid);
    SequenceDAO sequenceDAO = new SequenceDAO();
    Assert.assertFalse(sequenceDAO.hasSequence(plasmid.getId()));
    FeaturedDNASequence dnaSequence = GeneralParser.parse(sequenceString);
    PartSequence partSequence = new PartSequence(account.getEmail(), plasmid.getRecordId());
    partSequence.save(dnaSequence);
    SequenceFeatureDAO sequenceFeatureDAO = new SequenceFeatureDAO();
    List<SequenceFeature> sequenceFeatures = sequenceFeatureDAO.getEntrySequenceFeatures(plasmid);
    Assert.assertEquals(1, sequenceFeatures.size());
    Feature feature = sequenceFeatures.get(0).getFeature();
    DNAFeature dnaFeature = feature.toDataTransferObject();
    Curation curation = new Curation();
    curation.setExclude(true);
    dnaFeature.setCuration(curation);
    List<DNAFeature> features = new ArrayList<>();
    features.add(dnaFeature);
    Annotations annotations = new Annotations(account.getEmail());
    annotations.curate(features);
    sequenceFeatures = sequenceFeatureDAO.getEntrySequenceFeatures(plasmid);
    feature = sequenceFeatures.get(0).getFeature();
    Assert.assertTrue(feature.getCuration().isExclude());
}

Example 2 with Curation

use of org.jbei.ice.lib.dto.Curation in project ice by JBEI.

the class FeatureCurationModel method toDataTransferObject.

@Override
public Curation toDataTransferObject() {
    Curation curation = new Curation();
    curation.setExclude(this.exclude);
    return curation;
}