Examples with AccessPermission org.jbei.ice.lib.dto.access.AccessPermission used on opensource projects

Example 6 with AccessPermission

use of org.jbei.ice.lib.dto.access.AccessPermission in project ice by JBEI.

the class EntryController method updatePart.

/**
     * Update the information associated with the specified part.<br>
     * <b>Note</b> that any missing information will be deleted from the original entry.
     * In other words, if the part referenced by id <code>partId</code> has an alias value
     * of <code>alias</code> and the part object passed in the parameter does not contain this value,
     * when this method returns, the original entry's alias field will be removed.
     *
     * @param userId unique identifier for user making request
     * @param partId unique identifier for part being updated. This overrides the id in the partData object
     * @param part   information to update part with
     * @return unique identifier for part that was updated
     * @throws IllegalArgumentException if the entry associated with the partId cannot be located
     */
public long updatePart(String userId, long partId, PartData part) {
    Entry existing = dao.get(partId);
    if (existing == null)
        throw new IllegalArgumentException();
    authorization.expectWrite(userId, existing);
    Entry entry = InfoToModelFactory.updateEntryField(part, existing);
    entry.setModificationTime(Calendar.getInstance().getTime());
    if (entry.getVisibility() == Visibility.DRAFT.getValue()) {
        List<EntryField> invalidFields = EntryUtil.validates(part);
        if (invalidFields.isEmpty())
            entry.setVisibility(Visibility.OK.getValue());
    }
    entry = dao.update(entry);
    // check pi email
    String piEmail = entry.getPrincipalInvestigatorEmail();
    if (StringUtils.isNotEmpty(piEmail)) {
        Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
        if (pi != null) {
            // add write permission for the PI (method also checks to see if permission already exists)
            AccessPermission accessPermission = new AccessPermission();
            accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
            accessPermission.setArticleId(pi.getId());
            accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
            accessPermission.setTypeId(entry.getId());
            permissionsController.addPermission(userId, accessPermission);
        }
    }
    return entry.getId();
}

Example 7 with AccessPermission

use of org.jbei.ice.lib.dto.access.AccessPermission in project ice by JBEI.

the class EntryPermissions method getEntryPermissions.

/**
     * Retrieves permissions associated with a part. Requires that the requesting user has write permissions
     * on the specified part
     *
     * @return list of available permissions for the specified part
     * @throws PermissionException if the requesting user does not have write permissions for the part
     */
public List<AccessPermission> getEntryPermissions() {
    // viewing permissions requires write permissions
    authorization.expectWrite(userId, entry);
    ArrayList<AccessPermission> accessPermissions = new ArrayList<>();
    List<Permission> permissions = permissionDAO.getEntryPermissions(entry);
    GroupController groupController = new GroupController();
    Group publicGroup = groupController.createOrRetrievePublicGroup();
    for (Permission permission : permissions) {
        if (permission.getAccount() == null && permission.getGroup() == null)
            continue;
        if (permission.getGroup() != null && permission.getGroup() == publicGroup)
            continue;
        accessPermissions.add(permission.toDataTransferObject());
    }
    return accessPermissions;
}

Example 8 with AccessPermission

use of org.jbei.ice.lib.dto.access.AccessPermission in project ice by JBEI.

the class EntryPermissions method enablePublicReadAccess.

public boolean enablePublicReadAccess() {
    AccessPermission permission = new AccessPermission();
    permission.setType(AccessPermission.Type.READ_ENTRY);
    permission.setTypeId(this.entry.getId());
    permission.setArticle(AccessPermission.Article.GROUP);
    permission.setArticleId(groupController.createOrRetrievePublicGroup().getId());
    authorization.expectWrite(userId, entry);
    return addPermission(permission, entry, null, null) != null;
}

Example 9 with AccessPermission

use of org.jbei.ice.lib.dto.access.AccessPermission in project ice by JBEI.

the class FolderPermissions method get.

/**
     * Retrieves list of available folder permissions (both local and remote)
     *
     * @return list available folders
     */
public ArrayList<AccessPermission> get() {
    authorization.expectWrite(userId, folder);
    ArrayList<AccessPermission> accessPermissions = new ArrayList<>();
    // get local permissions
    List<Permission> permissions = this.permissionDAO.getFolderPermissions(folder);
    for (Permission permission : permissions) {
        if (permission.getGroup() != null && permission.getGroup().getUuid().equals(GroupController.PUBLIC_GROUP_UUID))
            continue;
        AccessPermission accessPermission = permission.toDataTransferObject();
        if (permission.getRemoteShare() != null) {
            RemoteShareModel remoteShareModel = permission.getRemoteShare();
            accessPermission.setArticle(AccessPermission.Article.REMOTE);
            // for remote access permissions, the article id is the actual permission
            accessPermission.setArticleId(permission.getId());
            accessPermission.setId(remoteShareModel.getId());
            //                accessPermission.setType(this.permission.isCanWrite() ? AccessPermission.Type.WRITE_FOLDER : AccessPermission.Type.READ_FOLDER);
            AccountTransfer accountTransfer = new AccountTransfer();
            accountTransfer.setEmail(remoteShareModel.getClient().getEmail());
            accessPermission.setPartner(remoteShareModel.getClient().getRemotePartner().toDataTransferObject());
            accessPermission.setDisplay(accountTransfer.getEmail());
        }
        accessPermissions.add(accessPermission);
    }
    return accessPermissions;
}

Example 10 with AccessPermission

use of org.jbei.ice.lib.dto.access.AccessPermission in project ice by JBEI.

the class BulkUploadController method addPermission.

/**
     * Adds specified access permission to the bulk upload.
     *
     * @param userId   unique identifier of user making the request. Must be an admin or owner of the upload
     * @param uploadId unique identifier for bulk upload
     * @param access   details about the permission to the added
     * @return added permission with identifier that can be used to remove/delete the permission
     * @throws java.lang.IllegalArgumentException if the upload cannot be located using its identifier
     */
public AccessPermission addPermission(String userId, long uploadId, AccessPermission access) {
    BulkUpload upload = dao.get(uploadId);
    if (upload == null)
        throw new IllegalArgumentException("Could not locate bulk upload with id " + uploadId);
    access.setTypeId(uploadId);
    Permission permission = new PermissionsController().addPermission(userId, access);
    upload.getPermissions().add(permission);
    dao.update(upload);
    return permission.toDataTransferObject();
}