Examples with UserComment org.jbei.ice.lib.dto.comment.UserComment used on opensource projects

Example 1 with UserComment

use of org.jbei.ice.lib.dto.comment.UserComment in project ice by JBEI.

the class EntryController method retrieveEntryComments.

public ArrayList<UserComment> retrieveEntryComments(String userId, long partId) {
    Entry entry = dao.get(partId);
    if (entry == null)
        return null;
    authorization.expectRead(userId, entry);
    // comments
    List<Comment> comments = commentDAO.retrieveComments(entry);
    ArrayList<UserComment> userComments = new ArrayList<>();
    for (Comment comment : comments) {
        userComments.add(comment.toDataTransferObject());
    }
    return userComments;
}

Example 2 with UserComment

use of org.jbei.ice.lib.dto.comment.UserComment in project ice by JBEI.

the class EntryController method updateEntryComment.

public UserComment updateEntryComment(String userId, long partId, long commentId, UserComment userComment) {
    Entry entry = dao.get(partId);
    if (entry == null)
        return null;
    authorization.canRead(userId, entry);
    Comment comment = commentDAO.get(commentId);
    if (comment == null)
        return createEntryComment(userId, partId, userComment);
    if (comment.getEntry().getId() != partId)
        return null;
    if (userComment.getMessage() == null || userComment.getMessage().isEmpty())
        return null;
    comment.setBody(userComment.getMessage());
    comment.setModificationTime(new Date());
    return commentDAO.update(comment).toDataTransferObject();
}

Example 3 with UserComment

use of org.jbei.ice.lib.dto.comment.UserComment in project ice by JBEI.

the class SampleService method retrieveEntrySamples.

public List<PartSample> retrieveEntrySamples(String userId, String entryId) {
    Entry entry = super.getEntry(entryId);
    if (entry == null)
        return null;
    entryAuthorization.expectRead(userId, entry);
    // samples
    List<Sample> entrySamples = dao.getSamplesByEntry(entry);
    ArrayList<PartSample> samples = new ArrayList<>();
    if (entrySamples == null)
        return samples;
    boolean inCart = false;
    if (userId != null) {
        Account userAccount = accountDAO.getByEmail(userId);
        inCart = DAOFactory.getRequestDAO().getSampleRequestInCart(userAccount, entry) != null;
    }
    ArrayList<Sample> siblingSamples = new ArrayList<>();
    for (Sample sample : entrySamples) {
        Storage storage = sample.getStorage();
        if (storage == null)
            continue;
        if (storage.getParent() != null && storage.getParent().getParent() != null) {
            siblingSamples.addAll(dao.getSamplesByStorage(storage.getParent().getParent()));
        }
    }
    entrySamples.addAll(siblingSamples);
    Set<Sample> unique = new HashSet<>(entrySamples);
    entrySamples = new ArrayList<>(unique);
    for (Sample sample : entrySamples) {
        // convert sample to info
        Storage storage = sample.getStorage();
        if (storage == null) {
            // dealing with sample with no storage
            PartSample generic = sample.toDataTransferObject();
            StorageLocation location = new StorageLocation();
            location.setType(SampleType.GENERIC);
            location.setDisplay(sample.getLabel());
            generic.setLocation(location);
            generic = setAccountInfo(generic, sample.getDepositor());
            samples.add(generic);
            continue;
        }
        StorageLocation storageLocation = storage.toDataTransferObject();
        while (storage.getParent() != null) {
            storage = storage.getParent();
            StorageLocation parentLocation = storage.toDataTransferObject();
            parentLocation.setChild(storageLocation);
            storageLocation = parentLocation;
            boolean isParent = (storageLocation.getType() != null && storageLocation.getType().isTopLevel());
            if (isParent)
                break;
        }
        // get specific sample type and details about it
        PartSample partSample = new PartSample();
        partSample.setId(sample.getId());
        partSample.setPartId(sample.getEntry().getId());
        partSample.setLocation(storageLocation);
        partSample.setPartName(sample.getEntry().getName());
        partSample.setLabel(sample.getLabel());
        if (sample.getEntry().getId() == entry.getId()) {
            partSample.setCreationTime(sample.getCreationTime().getTime());
            partSample.setInCart(inCart);
            partSample.setCanEdit(sampleAuthorization.canWrite(userId, sample));
            if (sample.getComments() != null) {
                for (Comment comment : sample.getComments()) {
                    UserComment userComment = new UserComment();
                    userComment.setId(comment.getId());
                    userComment.setMessage(comment.getBody());
                    partSample.getComments().add(userComment);
                }
            }
        } else {
            partSample.setCanEdit(false);
        }
        partSample = setAccountInfo(partSample, sample.getDepositor());
        samples.add(partSample);
    }
    return samples;
}

Example 4 with UserComment

use of org.jbei.ice.lib.dto.comment.UserComment in project ice by JBEI.

the class SampleServiceTest method testRetrieveEntrySamples.

@Test
public void testRetrieveEntrySamples() throws Exception {
    Account account = AccountCreator.createTestAccount("SampleServiceTest.testRetrieveEntrySamples", false);
    String userId = account.getEmail();
    Strain strain = TestEntryCreator.createTestStrain(account);
    long entryId = strain.getId();
    List<PartSample> samplesList = service.retrieveEntrySamples(userId, Long.toString(entryId));
    Assert.assertNotNull(samplesList);
    for (PartSample partSample : samplesList) {
        Assert.assertNotNull(partSample.getId());
        Assert.assertNotNull(partSample.getCreationTime());
        Assert.assertNotNull(partSample.getLabel());
        Assert.assertNotNull(partSample.getLocation());
        Assert.assertNotNull(partSample.getDepositor());
        Assert.assertNotNull(partSample.getId());
        Assert.assertNotNull(partSample.isCanEdit());
        StorageLocation location = partSample.getLocation();
        while (location.getChild() != null) {
            location = location.getChild();
            Assert.assertNotNull(location.getType());
            Assert.assertNotNull(location.getId());
            Assert.assertNotNull(location.getDisplay());
            Assert.assertNotNull(location.getName());
        }
        if (partSample.getComments() != null) {
            for (UserComment comment : partSample.getComments()) {
                Assert.assertNotNull(comment.getId());
                Assert.assertNotNull(comment.getMessage());
            }
        }
    }
}

Example 5 with UserComment

use of org.jbei.ice.lib.dto.comment.UserComment in project ice by JBEI.

the class EntryController method createEntryComment.

public UserComment createEntryComment(String userId, long partId, UserComment newComment) {
    Entry entry = dao.get(partId);
    if (entry == null)
        return null;
    authorization.canRead(userId, entry);
    Account account = accountController.getByEmail(userId);
    Comment comment = new Comment();
    comment.setAccount(account);
    comment.setEntry(entry);
    comment.setBody(newComment.getMessage());
    comment.setCreationTime(new Date());
    comment = commentDAO.create(comment);
    if (newComment.getSamples() != null) {
        SampleDAO sampleDAO = DAOFactory.getSampleDAO();
        for (PartSample partSample : newComment.getSamples()) {
            Sample sample = sampleDAO.get(partSample.getId());
            if (sample == null)
                continue;
            comment.getSamples().add(sample);
            sample.getComments().add(comment);
        }
    }
    comment = commentDAO.update(comment);
    return comment.toDataTransferObject();
}