Examples with PartData org.jbei.ice.lib.dto.entry.PartData used on opensource projects

Example 61 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class RemoteTransferTest method testGetPartsForTransfer.

@Test
public void testGetPartsForTransfer() throws Exception {
    EntryDAO dao = DAOFactory.getEntryDAO();
    Account account = AccountCreator.createTestAccount("testGetPartsForTransfer", false);
    Strain strain = TestEntryCreator.createTestStrain(account);
    Plasmid plasmid = TestEntryCreator.createTestPlasmid(account);
    strain.getLinkedEntries().add(plasmid);
    DAOFactory.getEntryDAO().update(strain);
    strain = (Strain) DAOFactory.getEntryDAO().get(strain.getId());
    Assert.assertTrue(strain.getLinkedEntries().size() == 1);
    Plasmid plasmid2 = TestEntryCreator.createTestPlasmid(account);
    strain.getLinkedEntries().add(plasmid2);
    dao.update(strain);
    Plasmid plasmid3 = TestEntryCreator.createTestPlasmid(account);
    Strain strain2 = TestEntryCreator.createTestStrain(account);
    strain2.getLinkedEntries().add(plasmid2);
    strain2.getLinkedEntries().add(plasmid3);
    dao.update(strain2);
    ArrayList<Long> ids = new ArrayList<>();
    ids.add(plasmid.getId());
    ids.add(plasmid2.getId());
    ids.add(plasmid3.getId());
    ids.add(strain.getId());
    ids.add(strain2.getId());
    List<PartData> data = transfer.getPartsForTransfer(ids);
    TransferredParts parts = new TransferredParts();
    Assert.assertEquals(data.size(), 2);
    for (PartData datum : data) {
        // both should have 2 linked entries with 1 in common
        Assert.assertEquals(datum.getLinkedParts().size(), 2);
        // transfer
        datum.setRecordId("");
        PartData transferred = parts.receiveTransferredEntry(datum);
        Assert.assertNotNull(transferred);
    }
}

Example 62 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class SearchControllerTest method testRunSearch.

@Test
public void testRunSearch() throws Exception {
    Account account = AccountCreator.createTestAccount("testRunSearch", false);
    Assert.assertNotNull(account);
    // create entry
    PlasmidData plasmidData = new PlasmidData();
    plasmidData.setCircular(true);
    plasmidData.setPromoters("pTet");
    plasmidData.setOriginOfReplication("oRep");
    PartData partData = new PartData(EntryType.PLASMID);
    partData.setBioSafetyLevel(BioSafetyOption.LEVEL_ONE.ordinal());
    partData.setStatus("Complete");
    partData.setName("testPlasmid");
    partData.setFundingSource("DOE");
    partData.setPrincipalInvestigator("Nathan");
    partData.setPlasmidData(plasmidData);
    Entry entry = InfoToModelFactory.infoToEntry(partData);
    entry = new EntryCreator().createEntry(account, entry, null);
    Assert.assertNotNull(entry);
    Assert.assertTrue(entry.getId() > 0);
    // commit triggers indexing
    HibernateUtil.commitTransaction();
    HibernateUtil.beginTransaction();
    SearchQuery query = new SearchQuery();
    query.setQueryString("testPlasmid");
    SearchResults results = controller.runSearch(account.getEmail(), query);
    Assert.assertNotNull(results);
    Assert.assertEquals(1, results.getResultCount());
    // search for promoters
    query.setQueryString("pTet");
    results = controller.runSearch(account.getEmail(), query);
    Assert.assertNotNull(results);
    Assert.assertEquals(1, results.getResultCount());
    // search email
    query.setQueryString(account.getEmail());
    results = controller.runSearch(account.getEmail(), query);
    Assert.assertNotNull(results);
    Assert.assertEquals(1, results.getResultCount());
    // fake search
    query.setQueryString("FAKE_SEARCH");
    results = controller.runSearch(account.getEmail(), query);
    Assert.assertNotNull(results);
    Assert.assertEquals(0, results.getResultCount());
}