Examples with PartnerEntries org.jbei.ice.lib.dto.web.PartnerEntries used on opensource projects

Example 1 with PartnerEntries

use of org.jbei.ice.lib.dto.web.PartnerEntries in project ice by JBEI.

the class RemoteEntries method getPublicEntries.

public PartnerEntries getPublicEntries(long remoteId, int offset, int limit, String sort, boolean asc) {
    if (!hasRemoteAccessEnabled())
        return null;
    RemotePartner partner = this.remotePartnerDAO.get(remoteId);
    if (partner == null)
        return null;
    FolderDetails details;
    try {
        final String restPath = "rest/folders/public/entries";
        HashMap<String, Object> queryParams = new HashMap<>();
        queryParams.put("offset", offset);
        queryParams.put("limit", limit);
        queryParams.put("asc", asc);
        queryParams.put("sort", sort);
        details = this.remoteContact.getFolderEntries(partner.getUrl(), restPath, queryParams, partner.getApiKey());
        if (details == null)
            return null;
    } catch (Exception e) {
        Logger.error(e);
        return null;
    }
    Results<PartData> results = new Results<>();
    results.setData(details.getEntries());
    results.setResultCount(details.getCount());
    return new PartnerEntries(partner.toDataTransferObject(), results);
}

Example 2 with PartnerEntries

use of org.jbei.ice.lib.dto.web.PartnerEntries in project ice by JBEI.

the class PartnerResource method getWebEntries.

/**
     * Retrieves entries for specified partner using the specified paging parameters
     *
     * @param partnerId unique identifier for registry partner whose entries are being retrieved
     * @param offset    record retrieve offset paging parameter
     * @param limit     maximum number of entries to retrieve
     * @param sort      field to sort on
     * @param asc       sort order
     * @return Response with public entries from registry partners
     */
@GET
@Produces(MediaType.APPLICATION_JSON)
@Path("/{id}/entries")
public Response getWebEntries(@PathParam("id") final long partnerId, @DefaultValue("0") @QueryParam("offset") final int offset, @DefaultValue("15") @QueryParam("limit") final int limit, @DefaultValue("created") @QueryParam("sort") final String sort, @DefaultValue("false") @QueryParam("asc") final boolean asc) {
    requireUserId();
    RemoteEntries remoteEntries = new RemoteEntries();
    PartnerEntries entries = remoteEntries.getPublicEntries(partnerId, offset, limit, sort, asc);
    return super.respond(Response.Status.OK, entries);
}

Example 3 with PartnerEntries

use of org.jbei.ice.lib.dto.web.PartnerEntries in project ice by JBEI.

the class RemoteEntriesAsCSV method writeList.

private boolean writeList(List<RemotePartner> partners) throws IOException {
    Path tmpPath = Paths.get(Utils.getConfigValue(ConfigurationKey.TEMPORARY_DIRECTORY));
    File tmpFile = File.createTempFile("remote-ice-", ".csv", tmpPath.toFile());
    csvPath = tmpFile.toPath();
    FileWriter fileWriter = new FileWriter(tmpFile);
    List<EntryField> fields = getEntryFields();
    String[] headers = getCSVHeaders(fields);
    // csv file headers
    File tmpZip = File.createTempFile("zip-", ".zip", tmpPath.toFile());
    FileOutputStream fos = new FileOutputStream(tmpZip);
    try (CSVWriter writer = new CSVWriter(fileWriter);
        ZipOutputStream zos = new ZipOutputStream(fos)) {
        writer.writeNext(headers);
        // go through partners
        for (RemotePartner partner : partners) {
            try {
                Logger.info("Retrieving from " + partner.getUrl());
                PartnerEntries partnerEntries = remoteEntries.getPublicEntries(partner.getId(), 0, Integer.MAX_VALUE, null, true);
                Results<PartData> webEntries = partnerEntries.getEntries();
                if (webEntries == null || webEntries.getData() == null) {
                    Logger.error("Could not retrieve entries for " + partner.getUrl());
                    continue;
                }
                Logger.info("Obtained " + webEntries.getResultCount() + " from " + partner.getUrl());
                // go through entries for each partner and write to the zip file
                writeDataEntries(partner, webEntries.getData(), fields, writer, zos);
            } catch (Exception e) {
                Logger.warn("Exception retrieving entries " + e.getMessage());
            }
        }
        // write local entries
        if (this.includeLocal) {
            Logger.info("Retrieving local public entries");
            Group publicGroup = new GroupController().createOrRetrievePublicGroup();
            Set<Group> groups = new HashSet<>();
            groups.add(publicGroup);
            EntryDAO entryDAO = DAOFactory.getEntryDAO();
            List<Entry> results = entryDAO.retrieveVisibleEntries(null, groups, ColumnField.CREATED, true, 0, Integer.MAX_VALUE, null);
            writeLocalEntries(results, fields, writer, zos);
        }
        // write the csv file to the zip
        writeZip(tmpZip, zos);
    }
    return true;
}